Strain Fitness in Variovorax sp. SCN45 around GFF6804

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6803 and GFF6804 are separated by 30 nucleotidesGFF6804 and GFF6805 overlap by 4 nucleotidesGFF6805 and GFF6806 are separated by 142 nucleotides GFF6803 - N-acyl homoserine lactone hydrolase, at 50,144 to 51,217 GFF6803 GFF6804 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 51,248 to 52,021 GFF6804 GFF6805 - FIG00821908: hypothetical protein, at 52,018 to 52,524 GFF6805 GFF6806 - transcriptional regulator, Crp/Fnr family, at 52,667 to 53,410 GFF6806 Position (kb) 51 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 50.307 kb on + strand, within GFF6803at 50.307 kb on + strand, within GFF6803at 50.307 kb on + strand, within GFF6803at 50.307 kb on + strand, within GFF6803at 50.307 kb on + strand, within GFF6803at 50.307 kb on + strand, within GFF6803at 50.307 kb on + strand, within GFF6803at 50.308 kb on - strand, within GFF6803at 50.308 kb on - strand, within GFF6803at 50.308 kb on - strand, within GFF6803at 50.308 kb on - strand, within GFF6803at 50.510 kb on + strand, within GFF6803at 50.510 kb on + strand, within GFF6803at 50.510 kb on + strand, within GFF6803at 50.511 kb on - strand, within GFF6803at 50.598 kb on + strand, within GFF6803at 50.598 kb on + strand, within GFF6803at 50.599 kb on - strand, within GFF6803at 50.599 kb on - strand, within GFF6803at 50.739 kb on + strand, within GFF6803at 50.739 kb on + strand, within GFF6803at 50.739 kb on + strand, within GFF6803at 50.739 kb on + strand, within GFF6803at 50.739 kb on + strand, within GFF6803at 50.739 kb on + strand, within GFF6803at 50.739 kb on + strand, within GFF6803at 50.740 kb on - strand, within GFF6803at 50.740 kb on - strand, within GFF6803at 50.740 kb on - strand, within GFF6803at 50.866 kb on - strand, within GFF6803at 50.866 kb on - strand, within GFF6803at 50.866 kb on - strand, within GFF6803at 50.940 kb on + strand, within GFF6803at 50.941 kb on - strand, within GFF6803at 51.252 kb on + strandat 51.543 kb on + strand, within GFF6804at 51.700 kb on + strand, within GFF6804at 51.700 kb on + strand, within GFF6804at 51.700 kb on + strand, within GFF6804at 51.701 kb on - strand, within GFF6804at 51.701 kb on - strand, within GFF6804at 52.145 kb on + strand, within GFF6805at 52.352 kb on + strand, within GFF6805at 52.352 kb on + strand, within GFF6805at 52.353 kb on - strand, within GFF6805at 52.353 kb on - strand, within GFF6805at 52.353 kb on - strand, within GFF6805at 52.355 kb on + strand, within GFF6805at 52.409 kb on + strand, within GFF6805at 52.410 kb on - strand, within GFF6805at 52.600 kb on + strandat 52.600 kb on + strandat 52.601 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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50,307 + GFF6803 0.15 -1.7
50,307 + GFF6803 0.15 +0.5
50,307 + GFF6803 0.15 -2.0
50,307 + GFF6803 0.15 -0.6
50,307 + GFF6803 0.15 +2.6
50,307 + GFF6803 0.15 -3.0
50,307 + GFF6803 0.15 +0.9
50,308 - GFF6803 0.15 -0.2
50,308 - GFF6803 0.15 -0.9
50,308 - GFF6803 0.15 -0.0
50,308 - GFF6803 0.15 +1.2
50,510 + GFF6803 0.34 +1.6
50,510 + GFF6803 0.34 -3.3
50,510 + GFF6803 0.34 +2.9
50,511 - GFF6803 0.34 -0.6
50,598 + GFF6803 0.42 -0.6
50,598 + GFF6803 0.42 -0.6
50,599 - GFF6803 0.42 +0.2
50,599 - GFF6803 0.42 -1.7
50,739 + GFF6803 0.55 -0.4
50,739 + GFF6803 0.55 -1.3
50,739 + GFF6803 0.55 -1.3
50,739 + GFF6803 0.55 -0.0
50,739 + GFF6803 0.55 -1.7
50,739 + GFF6803 0.55 +1.0
50,739 + GFF6803 0.55 -2.6
50,740 - GFF6803 0.55 -2.6
50,740 - GFF6803 0.55 +1.0
50,740 - GFF6803 0.55 -1.4
50,866 - GFF6803 0.67 +0.2
50,866 - GFF6803 0.67 +2.3
50,866 - GFF6803 0.67 -1.0
50,940 + GFF6803 0.74 -0.5
50,941 - GFF6803 0.74 +2.8
51,252 + +0.4
51,543 + GFF6804 0.38 -0.6
51,700 + GFF6804 0.58 -2.0
51,700 + GFF6804 0.58 -2.3
51,700 + GFF6804 0.58 +0.5
51,701 - GFF6804 0.59 +1.1
51,701 - GFF6804 0.59 -1.6
52,145 + GFF6805 0.25 +0.3
52,352 + GFF6805 0.66 +1.1
52,352 + GFF6805 0.66 -0.3
52,353 - GFF6805 0.66 +0.4
52,353 - GFF6805 0.66 -0.8
52,353 - GFF6805 0.66 +2.7
52,355 + GFF6805 0.66 +0.4
52,409 + GFF6805 0.77 +2.3
52,410 - GFF6805 0.77 +3.1
52,600 + +0.2
52,600 + +0.9
52,601 - +0.2

Or see this region's nucleotide sequence