Strain Fitness in Variovorax sp. SCN45 around GFF6754

Experiment: Community=Locust bean gum; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6753 and GFF6754 overlap by 4 nucleotidesGFF6754 and GFF6755 overlap by 4 nucleotides GFF6753 - hypothetical protein, at 191 to 2,137 GFF6753 GFF6754 - no description, at 2,134 to 2,649 GFF6754 GFF6755 - hypothetical protein, at 2,646 to 3,860 GFF6755 Position (kb) 2 3Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1.259 kb on + strand, within GFF6753at 1.260 kb on - strand, within GFF6753at 1.348 kb on + strand, within GFF6753at 1.399 kb on + strand, within GFF6753at 1.545 kb on + strand, within GFF6753at 1.545 kb on + strand, within GFF6753at 1.546 kb on - strand, within GFF6753at 1.546 kb on - strand, within GFF6753at 1.572 kb on + strand, within GFF6753at 1.572 kb on + strand, within GFF6753at 1.572 kb on + strand, within GFF6753at 1.740 kb on + strand, within GFF6753at 1.740 kb on + strand, within GFF6753at 1.741 kb on - strand, within GFF6753at 1.741 kb on - strand, within GFF6753at 1.851 kb on + strand, within GFF6753at 1.851 kb on + strand, within GFF6753at 1.851 kb on + strand, within GFF6753at 1.851 kb on + strand, within GFF6753at 1.852 kb on - strand, within GFF6753at 1.852 kb on - strand, within GFF6753at 1.852 kb on - strand, within GFF6753at 1.852 kb on - strand, within GFF6753at 1.931 kb on + strand, within GFF6753at 1.931 kb on + strand, within GFF6753at 1.932 kb on - strand, within GFF6753at 1.932 kb on - strand, within GFF6753at 1.974 kb on - strandat 1.974 kb on - strandat 1.974 kb on - strandat 2.001 kb on + strandat 2.002 kb on - strandat 2.002 kb on - strandat 2.002 kb on - strandat 2.109 kb on + strandat 2.109 kb on + strandat 2.109 kb on + strandat 2.109 kb on + strandat 2.109 kb on + strandat 2.109 kb on + strandat 2.109 kb on + strandat 2.110 kb on - strandat 2.110 kb on - strandat 2.110 kb on - strandat 2.110 kb on - strandat 2.110 kb on - strandat 2.110 kb on - strandat 2.255 kb on + strand, within GFF6754at 2.255 kb on + strand, within GFF6754at 2.255 kb on + strand, within GFF6754at 2.255 kb on + strand, within GFF6754at 2.255 kb on + strand, within GFF6754at 2.255 kb on + strand, within GFF6754at 2.256 kb on - strand, within GFF6754at 2.256 kb on - strand, within GFF6754at 2.256 kb on - strand, within GFF6754at 2.256 kb on - strand, within GFF6754at 2.578 kb on + strand, within GFF6754at 2.745 kb on + strandat 2.745 kb on + strandat 2.745 kb on + strandat 2.745 kb on + strandat 2.745 kb on + strandat 2.746 kb on - strandat 2.817 kb on + strand, within GFF6755at 2.817 kb on + strand, within GFF6755at 2.817 kb on + strand, within GFF6755at 2.818 kb on - strand, within GFF6755at 2.818 kb on - strand, within GFF6755at 2.890 kb on + strand, within GFF6755at 2.890 kb on + strand, within GFF6755at 2.890 kb on + strand, within GFF6755at 2.891 kb on - strand, within GFF6755at 2.909 kb on + strand, within GFF6755at 2.909 kb on + strand, within GFF6755at 2.926 kb on + strand, within GFF6755at 2.927 kb on - strand, within GFF6755at 2.998 kb on + strand, within GFF6755at 2.998 kb on + strand, within GFF6755at 2.998 kb on + strand, within GFF6755at 2.998 kb on + strand, within GFF6755at 3.057 kb on - strand, within GFF6755at 3.057 kb on - strand, within GFF6755at 3.057 kb on - strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.058 kb on + strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.059 kb on - strand, within GFF6755at 3.071 kb on + strand, within GFF6755at 3.085 kb on - strand, within GFF6755at 3.295 kb on + strand, within GFF6755at 3.295 kb on + strand, within GFF6755at 3.295 kb on + strand, within GFF6755at 3.295 kb on + strand, within GFF6755at 3.295 kb on + strand, within GFF6755at 3.295 kb on + strand, within GFF6755at 3.295 kb on + strand, within GFF6755at 3.296 kb on - strand, within GFF6755at 3.296 kb on - strand, within GFF6755at 3.321 kb on + strand, within GFF6755at 3.322 kb on - strand, within GFF6755at 3.322 kb on - strand, within GFF6755at 3.322 kb on - strand, within GFF6755at 3.355 kb on + strand, within GFF6755at 3.355 kb on + strand, within GFF6755at 3.356 kb on - strand, within GFF6755at 3.356 kb on - strand, within GFF6755at 3.356 kb on - strand, within GFF6755at 3.356 kb on - strand, within GFF6755at 3.393 kb on + strand, within GFF6755at 3.394 kb on - strand, within GFF6755at 3.394 kb on - strand, within GFF6755at 3.403 kb on + strand, within GFF6755at 3.403 kb on + strand, within GFF6755at 3.404 kb on - strand, within GFF6755at 3.404 kb on - strand, within GFF6755at 3.404 kb on - strand, within GFF6755at 3.404 kb on - strand, within GFF6755at 3.612 kb on + strand, within GFF6755at 3.612 kb on + strand, within GFF6755at 3.612 kb on + strand, within GFF6755at 3.612 kb on + strand, within GFF6755at 3.612 kb on + strand, within GFF6755at 3.613 kb on - strand, within GFF6755

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
remove
1,259 + GFF6753 0.55 -0.0
1,260 - GFF6753 0.55 -3.1
1,348 + GFF6753 0.59 -0.8
1,399 + GFF6753 0.62 -0.1
1,545 + GFF6753 0.70 -2.6
1,545 + GFF6753 0.70 +1.4
1,546 - GFF6753 0.70 -0.8
1,546 - GFF6753 0.70 -1.8
1,572 + GFF6753 0.71 +1.2
1,572 + GFF6753 0.71 +1.4
1,572 + GFF6753 0.71 -0.8
1,740 + GFF6753 0.80 -0.9
1,740 + GFF6753 0.80 +0.4
1,741 - GFF6753 0.80 +3.6
1,741 - GFF6753 0.80 +0.8
1,851 + GFF6753 0.85 -0.6
1,851 + GFF6753 0.85 -2.5
1,851 + GFF6753 0.85 -1.1
1,851 + GFF6753 0.85 +2.0
1,852 - GFF6753 0.85 +0.2
1,852 - GFF6753 0.85 -0.6
1,852 - GFF6753 0.85 -1.1
1,852 - GFF6753 0.85 +1.4
1,931 + GFF6753 0.89 +1.7
1,931 + GFF6753 0.89 -2.8
1,932 - GFF6753 0.89 +1.4
1,932 - GFF6753 0.89 -0.6
1,974 - -0.4
1,974 - +1.0
1,974 - +1.6
2,001 + -0.8
2,002 - -1.5
2,002 - -0.5
2,002 - -1.6
2,109 + -0.1
2,109 + -1.2
2,109 + -1.0
2,109 + +0.0
2,109 + -2.9
2,109 + -0.8
2,109 + -0.1
2,110 - -0.5
2,110 - -0.8
2,110 - +0.5
2,110 - +0.3
2,110 - +0.4
2,110 - -1.1
2,255 + GFF6754 0.23 -1.0
2,255 + GFF6754 0.23 -1.0
2,255 + GFF6754 0.23 +0.5
2,255 + GFF6754 0.23 +1.5
2,255 + GFF6754 0.23 -0.8
2,255 + GFF6754 0.23 -2.4
2,256 - GFF6754 0.24 -0.8
2,256 - GFF6754 0.24 +0.2
2,256 - GFF6754 0.24 +0.8
2,256 - GFF6754 0.24 +1.6
2,578 + GFF6754 0.86 -0.3
2,745 + +0.7
2,745 + -1.2
2,745 + -0.5
2,745 + -1.3
2,745 + +2.0
2,746 - -2.4
2,817 + GFF6755 0.14 -0.8
2,817 + GFF6755 0.14 +1.0
2,817 + GFF6755 0.14 +1.3
2,818 - GFF6755 0.14 -1.9
2,818 - GFF6755 0.14 +1.5
2,890 + GFF6755 0.20 +0.2
2,890 + GFF6755 0.20 -2.5
2,890 + GFF6755 0.20 -0.1
2,891 - GFF6755 0.20 -1.6
2,909 + GFF6755 0.22 -0.9
2,909 + GFF6755 0.22 -2.8
2,926 + GFF6755 0.23 -0.3
2,927 - GFF6755 0.23 +2.9
2,998 + GFF6755 0.29 -0.0
2,998 + GFF6755 0.29 -1.2
2,998 + GFF6755 0.29 -2.3
2,998 + GFF6755 0.29 +0.3
3,057 - GFF6755 0.34 -0.0
3,057 - GFF6755 0.34 -1.6
3,057 - GFF6755 0.34 -1.7
3,058 + GFF6755 0.34 -2.5
3,058 + GFF6755 0.34 -1.2
3,058 + GFF6755 0.34 +0.3
3,058 + GFF6755 0.34 +0.3
3,058 + GFF6755 0.34 +1.4
3,058 + GFF6755 0.34 -1.8
3,058 + GFF6755 0.34 +0.4
3,058 + GFF6755 0.34 -0.3
3,058 + GFF6755 0.34 -0.5
3,058 + GFF6755 0.34 -1.3
3,058 + GFF6755 0.34 -2.1
3,059 - GFF6755 0.34 -0.8
3,059 - GFF6755 0.34 -1.9
3,059 - GFF6755 0.34 -0.0
3,059 - GFF6755 0.34 +0.8
3,059 - GFF6755 0.34 +0.9
3,059 - GFF6755 0.34 +0.6
3,059 - GFF6755 0.34 -0.4
3,059 - GFF6755 0.34 +0.4
3,059 - GFF6755 0.34 +0.3
3,059 - GFF6755 0.34 -1.8
3,059 - GFF6755 0.34 -0.0
3,059 - GFF6755 0.34 +0.4
3,059 - GFF6755 0.34 +0.1
3,059 - GFF6755 0.34 -0.6
3,059 - GFF6755 0.34 +0.9
3,071 + GFF6755 0.35 -0.0
3,085 - GFF6755 0.36 +0.6
3,295 + GFF6755 0.53 +1.5
3,295 + GFF6755 0.53 -0.6
3,295 + GFF6755 0.53 +0.4
3,295 + GFF6755 0.53 +2.2
3,295 + GFF6755 0.53 +0.6
3,295 + GFF6755 0.53 -2.0
3,295 + GFF6755 0.53 +0.8
3,296 - GFF6755 0.53 -0.3
3,296 - GFF6755 0.53 +0.8
3,321 + GFF6755 0.56 +0.4
3,322 - GFF6755 0.56 +0.2
3,322 - GFF6755 0.56 +1.0
3,322 - GFF6755 0.56 +0.9
3,355 + GFF6755 0.58 +0.2
3,355 + GFF6755 0.58 -2.5
3,356 - GFF6755 0.58 +3.0
3,356 - GFF6755 0.58 -2.1
3,356 - GFF6755 0.58 -2.5
3,356 - GFF6755 0.58 -1.6
3,393 + GFF6755 0.61 +1.1
3,394 - GFF6755 0.62 +0.3
3,394 - GFF6755 0.62 -0.3
3,403 + GFF6755 0.62 +0.6
3,403 + GFF6755 0.62 +0.4
3,404 - GFF6755 0.62 -0.0
3,404 - GFF6755 0.62 +2.4
3,404 - GFF6755 0.62 -0.7
3,404 - GFF6755 0.62 -2.3
3,612 + GFF6755 0.80 -0.4
3,612 + GFF6755 0.80 -0.4
3,612 + GFF6755 0.80 -1.0
3,612 + GFF6755 0.80 -0.3
3,612 + GFF6755 0.80 +0.9
3,613 - GFF6755 0.80 -1.2

Or see this region's nucleotide sequence