Strain Fitness in Variovorax sp. SCN45 around GFF6739

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6738 and GFF6739 overlap by 4 nucleotidesGFF6739 and GFF6740 are separated by 204 nucleotides GFF6738 - Uncharacterized aldehyde oxidase, molybdopterin-binding subunit, at 50,067 to 52,316 GFF6738 GFF6739 - Putative diheme cytochrome c-553, at 52,313 to 53,617 GFF6739 GFF6740 - hypothetical protein, at 53,822 to 54,547 GFF6740 Position (kb) 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 51.393 kb on + strand, within GFF6738at 51.393 kb on + strand, within GFF6738at 51.393 kb on + strand, within GFF6738at 51.394 kb on - strand, within GFF6738at 51.394 kb on - strand, within GFF6738at 51.394 kb on - strand, within GFF6738at 51.394 kb on - strand, within GFF6738at 51.552 kb on + strand, within GFF6738at 51.552 kb on + strand, within GFF6738at 51.552 kb on + strand, within GFF6738at 51.552 kb on + strand, within GFF6738at 51.553 kb on - strand, within GFF6738at 51.553 kb on - strand, within GFF6738at 52.367 kb on + strandat 52.460 kb on + strand, within GFF6739at 52.562 kb on + strand, within GFF6739at 52.562 kb on + strand, within GFF6739at 52.562 kb on + strand, within GFF6739at 52.562 kb on + strand, within GFF6739at 52.562 kb on + strand, within GFF6739at 52.563 kb on - strand, within GFF6739at 52.563 kb on - strand, within GFF6739at 52.563 kb on - strand, within GFF6739at 52.685 kb on + strand, within GFF6739at 52.685 kb on + strand, within GFF6739at 52.686 kb on - strand, within GFF6739at 52.736 kb on + strand, within GFF6739at 52.736 kb on + strand, within GFF6739at 52.736 kb on + strand, within GFF6739at 52.736 kb on + strand, within GFF6739at 52.898 kb on + strand, within GFF6739at 52.898 kb on + strand, within GFF6739at 52.898 kb on + strand, within GFF6739at 52.899 kb on - strand, within GFF6739at 52.899 kb on - strand, within GFF6739at 52.899 kb on - strand, within GFF6739at 52.899 kb on - strand, within GFF6739at 52.899 kb on - strand, within GFF6739at 53.012 kb on + strand, within GFF6739at 53.012 kb on + strand, within GFF6739at 53.012 kb on + strand, within GFF6739at 53.013 kb on - strand, within GFF6739at 53.075 kb on + strand, within GFF6739at 53.486 kb on + strand, within GFF6739at 53.487 kb on - strandat 53.487 kb on - strandat 53.510 kb on + strandat 53.511 kb on - strandat 53.511 kb on - strandat 53.543 kb on + strandat 53.544 kb on - strandat 53.544 kb on - strandat 53.623 kb on + strandat 53.624 kb on - strandat 53.658 kb on - strandat 53.672 kb on - strandat 53.672 kb on - strandat 53.672 kb on - strandat 53.758 kb on - strandat 53.828 kb on - strandat 53.828 kb on - strandat 53.864 kb on + strandat 53.864 kb on + strandat 53.864 kb on + strandat 53.864 kb on + strandat 53.864 kb on + strandat 53.864 kb on + strandat 53.864 kb on + strandat 53.865 kb on - strandat 53.865 kb on - strandat 53.895 kb on - strand, within GFF6740at 54.020 kb on + strand, within GFF6740at 54.106 kb on - strand, within GFF6740at 54.106 kb on - strand, within GFF6740

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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51,393 + GFF6738 0.59 -1.9
51,393 + GFF6738 0.59 +0.5
51,393 + GFF6738 0.59 +0.6
51,394 - GFF6738 0.59 -3.3
51,394 - GFF6738 0.59 -0.9
51,394 - GFF6738 0.59 +2.9
51,394 - GFF6738 0.59 -0.9
51,552 + GFF6738 0.66 -0.3
51,552 + GFF6738 0.66 -0.6
51,552 + GFF6738 0.66 -2.1
51,552 + GFF6738 0.66 -0.3
51,553 - GFF6738 0.66 +2.5
51,553 - GFF6738 0.66 -0.4
52,367 + -3.2
52,460 + GFF6739 0.11 -2.5
52,562 + GFF6739 0.19 +0.5
52,562 + GFF6739 0.19 +0.5
52,562 + GFF6739 0.19 +2.6
52,562 + GFF6739 0.19 -1.2
52,562 + GFF6739 0.19 -2.9
52,563 - GFF6739 0.19 +1.6
52,563 - GFF6739 0.19 -0.9
52,563 - GFF6739 0.19 -0.8
52,685 + GFF6739 0.29 -2.6
52,685 + GFF6739 0.29 +1.2
52,686 - GFF6739 0.29 +2.0
52,736 + GFF6739 0.32 -0.7
52,736 + GFF6739 0.32 +0.0
52,736 + GFF6739 0.32 +1.2
52,736 + GFF6739 0.32 +0.1
52,898 + GFF6739 0.45 -0.5
52,898 + GFF6739 0.45 +1.0
52,898 + GFF6739 0.45 +1.5
52,899 - GFF6739 0.45 -0.6
52,899 - GFF6739 0.45 -0.4
52,899 - GFF6739 0.45 -0.4
52,899 - GFF6739 0.45 -1.4
52,899 - GFF6739 0.45 -0.6
53,012 + GFF6739 0.54 +0.9
53,012 + GFF6739 0.54 +0.5
53,012 + GFF6739 0.54 +0.9
53,013 - GFF6739 0.54 +2.9
53,075 + GFF6739 0.58 +1.5
53,486 + GFF6739 0.90 -0.8
53,487 - +0.3
53,487 - -0.0
53,510 + -1.7
53,511 - -2.3
53,511 - -1.4
53,543 + -1.1
53,544 - -1.5
53,544 - -1.3
53,623 + -0.7
53,624 - +1.0
53,658 - +1.7
53,672 - -2.2
53,672 - +0.3
53,672 - +1.0
53,758 - +0.5
53,828 - -1.3
53,828 - -0.7
53,864 + -1.2
53,864 + +3.4
53,864 + -1.9
53,864 + -1.2
53,864 + +1.1
53,864 + -1.5
53,864 + +0.5
53,865 - -1.7
53,865 - -2.9
53,895 - GFF6740 0.10 -2.1
54,020 + GFF6740 0.27 +1.1
54,106 - GFF6740 0.39 -2.5
54,106 - GFF6740 0.39 +1.5

Or see this region's nucleotide sequence