Strain Fitness in Variovorax sp. SCN45 around GFF669

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF668 and GFF669 are separated by 123 nucleotidesGFF669 and GFF670 are separated by 9 nucleotides GFF668 - Transcriptional regulator, LysR family, at 720,698 to 721,609 GFF668 GFF669 - BUG/TctC family periplasmic protein, at 721,733 to 722,728 GFF669 GFF670 - putative amidase Psyr_2260, at 722,738 to 724,282 GFF670 Position (kb) 721 722 723Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 720.779 kb on + strandat 720.779 kb on + strandat 720.779 kb on + strandat 720.780 kb on - strandat 720.822 kb on - strand, within GFF668at 720.873 kb on + strand, within GFF668at 720.873 kb on + strand, within GFF668at 720.873 kb on + strand, within GFF668at 720.873 kb on + strand, within GFF668at 720.873 kb on + strand, within GFF668at 720.873 kb on + strand, within GFF668at 720.873 kb on + strand, within GFF668at 720.874 kb on - strand, within GFF668at 720.874 kb on - strand, within GFF668at 720.874 kb on - strand, within GFF668at 720.874 kb on - strand, within GFF668at 720.874 kb on - strand, within GFF668at 720.874 kb on - strand, within GFF668at 720.874 kb on - strand, within GFF668at 720.951 kb on + strand, within GFF668at 720.951 kb on + strand, within GFF668at 720.951 kb on + strand, within GFF668at 720.952 kb on - strand, within GFF668at 720.952 kb on - strand, within GFF668at 721.166 kb on + strand, within GFF668at 721.166 kb on + strand, within GFF668at 721.166 kb on + strand, within GFF668at 721.166 kb on + strand, within GFF668at 721.166 kb on + strand, within GFF668at 721.166 kb on + strand, within GFF668at 721.166 kb on + strand, within GFF668at 721.166 kb on + strand, within GFF668at 721.166 kb on + strand, within GFF668at 721.167 kb on - strand, within GFF668at 721.167 kb on - strand, within GFF668at 721.167 kb on - strand, within GFF668at 721.167 kb on - strand, within GFF668at 721.167 kb on - strand, within GFF668at 721.167 kb on - strand, within GFF668at 721.167 kb on - strand, within GFF668at 721.167 kb on - strand, within GFF668at 721.655 kb on - strandat 721.689 kb on + strandat 721.689 kb on + strandat 721.689 kb on + strandat 721.689 kb on + strandat 721.689 kb on + strandat 721.689 kb on + strandat 721.689 kb on + strandat 721.689 kb on + strandat 721.689 kb on + strandat 721.689 kb on + strandat 721.690 kb on - strandat 721.690 kb on - strandat 721.690 kb on - strandat 721.690 kb on - strandat 721.690 kb on - strandat 721.690 kb on - strandat 721.778 kb on + strandat 721.778 kb on + strandat 721.778 kb on + strandat 721.778 kb on + strandat 721.778 kb on + strandat 721.778 kb on + strandat 721.779 kb on - strandat 721.779 kb on - strandat 721.779 kb on - strandat 721.779 kb on - strandat 721.779 kb on - strandat 721.779 kb on - strandat 721.988 kb on + strand, within GFF669at 721.988 kb on + strand, within GFF669at 721.988 kb on + strand, within GFF669at 721.988 kb on + strand, within GFF669at 721.988 kb on + strand, within GFF669at 721.989 kb on - strand, within GFF669at 721.989 kb on - strand, within GFF669at 722.081 kb on + strand, within GFF669at 722.082 kb on - strand, within GFF669at 722.189 kb on + strand, within GFF669at 722.189 kb on + strand, within GFF669at 722.190 kb on - strand, within GFF669at 722.213 kb on + strand, within GFF669at 722.213 kb on + strand, within GFF669at 722.213 kb on + strand, within GFF669at 722.213 kb on + strand, within GFF669at 722.214 kb on - strand, within GFF669at 722.214 kb on - strand, within GFF669at 722.214 kb on - strand, within GFF669at 722.214 kb on - strand, within GFF669at 722.214 kb on - strand, within GFF669at 722.219 kb on + strand, within GFF669at 722.219 kb on + strand, within GFF669at 722.220 kb on - strand, within GFF669at 722.220 kb on - strand, within GFF669at 722.220 kb on - strand, within GFF669at 722.220 kb on - strand, within GFF669at 722.220 kb on - strand, within GFF669at 722.306 kb on + strand, within GFF669at 722.306 kb on + strand, within GFF669at 722.306 kb on + strand, within GFF669at 722.307 kb on - strand, within GFF669at 722.483 kb on + strand, within GFF669at 722.484 kb on - strand, within GFF669at 722.636 kb on + strandat 722.636 kb on + strandat 722.874 kb on + strandat 723.053 kb on + strand, within GFF670at 723.054 kb on - strand, within GFF670at 723.054 kb on - strand, within GFF670at 723.054 kb on - strand, within GFF670

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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720,779 + -0.3
720,779 + -1.9
720,779 + -0.4
720,780 - -0.4
720,822 - GFF668 0.14 -3.1
720,873 + GFF668 0.19 +0.7
720,873 + GFF668 0.19 -3.1
720,873 + GFF668 0.19 +1.7
720,873 + GFF668 0.19 +3.8
720,873 + GFF668 0.19 -0.3
720,873 + GFF668 0.19 -1.5
720,873 + GFF668 0.19 +1.1
720,874 - GFF668 0.19 +0.3
720,874 - GFF668 0.19 -0.2
720,874 - GFF668 0.19 +1.2
720,874 - GFF668 0.19 +0.1
720,874 - GFF668 0.19 -2.3
720,874 - GFF668 0.19 -3.1
720,874 - GFF668 0.19 +0.1
720,951 + GFF668 0.28 -2.1
720,951 + GFF668 0.28 -0.3
720,951 + GFF668 0.28 +0.2
720,952 - GFF668 0.28 -1.2
720,952 - GFF668 0.28 +0.2
721,166 + GFF668 0.51 -1.7
721,166 + GFF668 0.51 -0.2
721,166 + GFF668 0.51 -1.6
721,166 + GFF668 0.51 -0.9
721,166 + GFF668 0.51 -2.0
721,166 + GFF668 0.51 -0.4
721,166 + GFF668 0.51 +1.7
721,166 + GFF668 0.51 -1.8
721,166 + GFF668 0.51 +0.2
721,167 - GFF668 0.51 +1.5
721,167 - GFF668 0.51 +1.7
721,167 - GFF668 0.51 -0.9
721,167 - GFF668 0.51 -0.3
721,167 - GFF668 0.51 +0.5
721,167 - GFF668 0.51 -0.0
721,167 - GFF668 0.51 -2.2
721,167 - GFF668 0.51 -1.2
721,655 - -0.7
721,689 + -1.0
721,689 + -1.8
721,689 + -2.2
721,689 + -2.9
721,689 + -1.9
721,689 + -2.6
721,689 + -0.9
721,689 + -0.3
721,689 + -2.2
721,689 + -0.3
721,690 - +0.1
721,690 - -2.7
721,690 - +1.7
721,690 - +0.4
721,690 - -0.4
721,690 - -2.2
721,778 + -3.5
721,778 + -0.7
721,778 + +1.4
721,778 + +0.7
721,778 + -2.0
721,778 + -0.3
721,779 - -0.5
721,779 - +0.5
721,779 - -2.3
721,779 - -0.3
721,779 - +0.4
721,779 - -1.9
721,988 + GFF669 0.26 -0.4
721,988 + GFF669 0.26 -0.8
721,988 + GFF669 0.26 -3.0
721,988 + GFF669 0.26 -2.7
721,988 + GFF669 0.26 +1.2
721,989 - GFF669 0.26 +0.1
721,989 - GFF669 0.26 -0.2
722,081 + GFF669 0.35 -0.9
722,082 - GFF669 0.35 -4.8
722,189 + GFF669 0.46 -1.7
722,189 + GFF669 0.46 +0.1
722,190 - GFF669 0.46 +0.1
722,213 + GFF669 0.48 -0.1
722,213 + GFF669 0.48 -2.6
722,213 + GFF669 0.48 +1.5
722,213 + GFF669 0.48 -1.0
722,214 - GFF669 0.48 -0.3
722,214 - GFF669 0.48 +1.2
722,214 - GFF669 0.48 -2.4
722,214 - GFF669 0.48 -0.6
722,214 - GFF669 0.48 -0.3
722,219 + GFF669 0.49 +0.7
722,219 + GFF669 0.49 -0.7
722,220 - GFF669 0.49 -1.0
722,220 - GFF669 0.49 -1.1
722,220 - GFF669 0.49 -2.6
722,220 - GFF669 0.49 -0.0
722,220 - GFF669 0.49 -3.5
722,306 + GFF669 0.58 -0.7
722,306 + GFF669 0.58 -1.9
722,306 + GFF669 0.58 +0.7
722,307 - GFF669 0.58 +1.7
722,483 + GFF669 0.75 -0.7
722,484 - GFF669 0.75 -4.2
722,636 + -1.1
722,636 + +0.3
722,874 + -1.1
723,053 + GFF670 0.20 -2.1
723,054 - GFF670 0.20 -1.5
723,054 - GFF670 0.20 +0.3
723,054 - GFF670 0.20 +1.2

Or see this region's nucleotide sequence