Strain Fitness in Variovorax sp. SCN45 around GFF6685

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6683 and GFF6684 are separated by 1 nucleotidesGFF6684 and GFF6685 are separated by 146 nucleotidesGFF6685 and GFF6686 are separated by 87 nucleotides GFF6683 - Efflux ABC transporter, permease protein, at 60,331 to 61,743 GFF6683 GFF6684 - ABC transporter, ATP-binding protein, at 61,745 to 62,452 GFF6684 GFF6685 - LSU ribosomal protein L36p @ LSU ribosomal protein L36p, zinc-independent, at 62,599 to 62,748 GFF6685 GFF6686 - Peroxide stress regulator; Ferric uptake regulation protein; Fe2+/Zn2+ uptake regulation proteins, at 62,836 to 63,279 GFF6686 Position (kb) 62 63Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 61.670 kb on + strandat 61.671 kb on - strandat 61.768 kb on - strandat 61.768 kb on - strandat 62.196 kb on + strand, within GFF6684at 62.196 kb on + strand, within GFF6684at 62.197 kb on - strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.221 kb on - strand, within GFF6684at 62.221 kb on - strand, within GFF6684at 62.221 kb on - strand, within GFF6684at 62.221 kb on - strand, within GFF6684at 62.221 kb on - strand, within GFF6684at 62.221 kb on - strand, within GFF6684at 62.221 kb on - strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.365 kb on - strand, within GFF6684at 62.365 kb on - strand, within GFF6684at 62.365 kb on - strand, within GFF6684at 62.365 kb on - strand, within GFF6684at 62.365 kb on - strand, within GFF6684at 62.365 kb on - strand, within GFF6684at 62.421 kb on + strandat 62.669 kb on + strand, within GFF6685at 62.669 kb on + strand, within GFF6685at 62.669 kb on + strand, within GFF6685at 62.669 kb on + strand, within GFF6685at 62.669 kb on + strand, within GFF6685at 62.670 kb on - strand, within GFF6685at 62.670 kb on - strand, within GFF6685at 62.670 kb on - strand, within GFF6685at 62.670 kb on - strand, within GFF6685at 62.670 kb on - strand, within GFF6685at 62.670 kb on - strand, within GFF6685at 62.670 kb on - strand, within GFF6685at 62.754 kb on + strandat 62.754 kb on + strandat 62.755 kb on - strandat 62.755 kb on - strandat 62.755 kb on - strandat 62.765 kb on + strandat 62.786 kb on - strandat 62.786 kb on - strandat 62.788 kb on - strandat 62.837 kb on + strandat 62.838 kb on - strandat 62.838 kb on - strandat 62.866 kb on + strandat 62.867 kb on - strandat 62.867 kb on - strandat 62.867 kb on - strandat 62.867 kb on - strandat 62.867 kb on - strandat 62.888 kb on + strand, within GFF6686at 62.999 kb on + strand, within GFF6686at 62.999 kb on + strand, within GFF6686at 62.999 kb on + strand, within GFF6686at 62.999 kb on + strand, within GFF6686at 62.999 kb on + strand, within GFF6686at 63.000 kb on - strand, within GFF6686at 63.000 kb on - strand, within GFF6686at 63.000 kb on - strand, within GFF6686at 63.000 kb on - strand, within GFF6686at 63.000 kb on - strand, within GFF6686at 63.000 kb on - strand, within GFF6686at 63.000 kb on - strand, within GFF6686at 63.078 kb on - strand, within GFF6686at 63.150 kb on - strand, within GFF6686at 63.213 kb on + strand, within GFF6686at 63.213 kb on + strand, within GFF6686at 63.213 kb on + strand, within GFF6686at 63.214 kb on - strand, within GFF6686at 63.214 kb on - strand, within GFF6686at 63.214 kb on - strand, within GFF6686at 63.290 kb on + strandat 63.291 kb on - strandat 63.748 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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61,670 + +1.1
61,671 - -1.5
61,768 - -1.0
61,768 - -1.0
62,196 + GFF6684 0.64 +0.2
62,196 + GFF6684 0.64 -3.4
62,197 - GFF6684 0.64 -2.4
62,220 + GFF6684 0.67 -1.2
62,220 + GFF6684 0.67 +0.7
62,220 + GFF6684 0.67 -0.5
62,220 + GFF6684 0.67 +1.4
62,220 + GFF6684 0.67 -3.1
62,220 + GFF6684 0.67 -0.2
62,220 + GFF6684 0.67 -2.4
62,220 + GFF6684 0.67 -2.3
62,220 + GFF6684 0.67 +0.2
62,220 + GFF6684 0.67 -0.2
62,221 - GFF6684 0.67 +1.4
62,221 - GFF6684 0.67 -1.4
62,221 - GFF6684 0.67 -2.1
62,221 - GFF6684 0.67 +2.1
62,221 - GFF6684 0.67 +0.8
62,221 - GFF6684 0.67 +1.1
62,221 - GFF6684 0.67 +1.8
62,364 + GFF6684 0.87 +0.8
62,364 + GFF6684 0.87 -1.0
62,364 + GFF6684 0.87 +1.2
62,364 + GFF6684 0.87 -0.5
62,364 + GFF6684 0.87 -0.9
62,364 + GFF6684 0.87 -1.5
62,364 + GFF6684 0.87 -0.2
62,364 + GFF6684 0.87 -1.4
62,364 + GFF6684 0.87 -0.5
62,364 + GFF6684 0.87 -2.0
62,365 - GFF6684 0.88 -0.6
62,365 - GFF6684 0.88 -1.2
62,365 - GFF6684 0.88 +1.6
62,365 - GFF6684 0.88 -1.8
62,365 - GFF6684 0.88 -0.9
62,365 - GFF6684 0.88 -0.2
62,421 + -0.6
62,669 + GFF6685 0.47 -1.9
62,669 + GFF6685 0.47 -0.7
62,669 + GFF6685 0.47 -0.6
62,669 + GFF6685 0.47 +1.6
62,669 + GFF6685 0.47 +1.0
62,670 - GFF6685 0.47 +0.3
62,670 - GFF6685 0.47 -0.3
62,670 - GFF6685 0.47 -0.3
62,670 - GFF6685 0.47 -1.9
62,670 - GFF6685 0.47 +1.1
62,670 - GFF6685 0.47 -0.2
62,670 - GFF6685 0.47 +1.5
62,754 + -0.4
62,754 + +0.2
62,755 - +0.5
62,755 - -0.5
62,755 - -0.5
62,765 + -1.0
62,786 - +0.7
62,786 - -2.5
62,788 - +0.5
62,837 + -1.2
62,838 - -3.0
62,838 - -1.2
62,866 + +1.3
62,867 - -2.5
62,867 - -2.6
62,867 - +0.7
62,867 - -0.1
62,867 - +1.0
62,888 + GFF6686 0.12 -0.2
62,999 + GFF6686 0.37 -0.8
62,999 + GFF6686 0.37 -0.2
62,999 + GFF6686 0.37 +0.0
62,999 + GFF6686 0.37 +0.7
62,999 + GFF6686 0.37 -1.7
63,000 - GFF6686 0.37 -0.3
63,000 - GFF6686 0.37 +2.8
63,000 - GFF6686 0.37 -1.0
63,000 - GFF6686 0.37 -0.2
63,000 - GFF6686 0.37 -0.7
63,000 - GFF6686 0.37 +0.3
63,000 - GFF6686 0.37 +0.6
63,078 - GFF6686 0.55 -2.0
63,150 - GFF6686 0.71 -2.7
63,213 + GFF6686 0.85 -1.8
63,213 + GFF6686 0.85 -1.7
63,213 + GFF6686 0.85 +0.0
63,214 - GFF6686 0.85 -0.3
63,214 - GFF6686 0.85 +1.9
63,214 - GFF6686 0.85 -0.7
63,290 + -1.8
63,291 - -1.9
63,748 - -0.6

Or see this region's nucleotide sequence