Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6662 and GFF6663 are separated by 39 nucleotides GFF6663 and GFF6664 overlap by 4 nucleotides GFF6664 and GFF6665 are separated by 56 nucleotides
GFF6662 - hypothetical protein, at 40,224 to 40,745
GFF6662
GFF6663 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 40,785 to 41,741
GFF6663
GFF6664 - Putative transmembrane protein, at 41,738 to 42,037
GFF6664
GFF6665 - Autolysin sensor kinase (EC 2.7.3.-), at 42,094 to 43,107
GFF6665
Position (kb) 41
42
43 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 40.743 kb on + strand at 40.743 kb on + strand at 40.743 kb on + strand at 40.744 kb on - strand at 40.746 kb on + strand at 40.746 kb on + strand at 40.746 kb on + strand at 40.747 kb on - strand at 40.747 kb on - strand at 40.747 kb on - strand at 40.887 kb on + strand, within GFF6663 at 40.887 kb on + strand, within GFF6663 at 40.887 kb on + strand, within GFF6663 at 40.887 kb on + strand, within GFF6663 at 40.887 kb on + strand, within GFF6663 at 40.888 kb on - strand, within GFF6663 at 40.888 kb on - strand, within GFF6663 at 40.888 kb on - strand, within GFF6663 at 40.888 kb on - strand, within GFF6663 at 40.995 kb on + strand, within GFF6663 at 40.995 kb on + strand, within GFF6663 at 40.995 kb on + strand, within GFF6663 at 40.995 kb on + strand, within GFF6663 at 40.995 kb on + strand, within GFF6663 at 40.995 kb on + strand, within GFF6663 at 40.996 kb on - strand, within GFF6663 at 40.996 kb on - strand, within GFF6663 at 40.996 kb on - strand, within GFF6663 at 40.996 kb on - strand, within GFF6663 at 40.996 kb on - strand, within GFF6663 at 40.996 kb on - strand, within GFF6663 at 40.996 kb on - strand, within GFF6663 at 41.073 kb on + strand, within GFF6663 at 41.073 kb on + strand, within GFF6663 at 41.073 kb on + strand, within GFF6663 at 41.073 kb on + strand, within GFF6663 at 41.073 kb on + strand, within GFF6663 at 41.074 kb on - strand, within GFF6663 at 41.074 kb on - strand, within GFF6663 at 41.074 kb on - strand, within GFF6663 at 41.074 kb on - strand, within GFF6663 at 41.074 kb on - strand, within GFF6663 at 41.074 kb on - strand, within GFF6663 at 41.074 kb on - strand, within GFF6663 at 41.076 kb on + strand, within GFF6663 at 41.076 kb on + strand, within GFF6663 at 41.076 kb on + strand, within GFF6663 at 41.076 kb on + strand, within GFF6663 at 41.076 kb on + strand, within GFF6663 at 41.076 kb on + strand, within GFF6663 at 41.076 kb on + strand, within GFF6663 at 41.077 kb on - strand, within GFF6663 at 41.077 kb on - strand, within GFF6663 at 41.077 kb on - strand, within GFF6663 at 41.077 kb on - strand, within GFF6663 at 41.077 kb on - strand, within GFF6663 at 41.077 kb on - strand, within GFF6663 at 41.082 kb on + strand, within GFF6663 at 41.082 kb on + strand, within GFF6663 at 41.082 kb on + strand, within GFF6663 at 41.083 kb on - strand, within GFF6663 at 41.283 kb on + strand, within GFF6663 at 41.283 kb on + strand, within GFF6663 at 41.283 kb on + strand, within GFF6663 at 41.284 kb on - strand, within GFF6663 at 41.284 kb on - strand, within GFF6663 at 41.284 kb on - strand, within GFF6663 at 41.388 kb on + strand, within GFF6663 at 41.403 kb on + strand, within GFF6663 at 41.404 kb on - strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.445 kb on + strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.446 kb on - strand, within GFF6663 at 41.479 kb on - strand, within GFF6663 at 41.592 kb on + strand, within GFF6663 at 41.592 kb on + strand, within GFF6663 at 41.592 kb on + strand, within GFF6663 at 41.592 kb on + strand, within GFF6663 at 41.592 kb on + strand, within GFF6663 at 41.592 kb on + strand, within GFF6663 at 41.593 kb on - strand, within GFF6663 at 41.593 kb on - strand, within GFF6663 at 41.593 kb on - strand, within GFF6663 at 41.593 kb on - strand, within GFF6663 at 41.593 kb on - strand, within GFF6663 at 41.593 kb on - strand, within GFF6663 at 41.593 kb on - strand, within GFF6663 at 41.593 kb on - strand, within GFF6663 at 41.722 kb on - strand at 41.722 kb on - strand at 41.722 kb on - strand at 41.722 kb on - strand at 41.768 kb on + strand, within GFF6664 at 41.768 kb on + strand, within GFF6664 at 41.822 kb on + strand, within GFF6664 at 41.822 kb on + strand, within GFF6664 at 41.822 kb on + strand, within GFF6664 at 41.822 kb on + strand, within GFF6664 at 41.822 kb on + strand, within GFF6664 at 41.822 kb on + strand, within GFF6664 at 41.822 kb on + strand, within GFF6664 at 41.822 kb on + strand, within GFF6664 at 41.822 kb on + strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.823 kb on - strand, within GFF6664 at 41.840 kb on + strand, within GFF6664 at 41.840 kb on + strand, within GFF6664 at 41.841 kb on - strand, within GFF6664 at 41.841 kb on - strand, within GFF6664 at 41.841 kb on - strand, within GFF6664 at 41.841 kb on - strand, within GFF6664 at 41.903 kb on + strand, within GFF6664 at 41.903 kb on + strand, within GFF6664 at 41.903 kb on + strand, within GFF6664 at 41.903 kb on + strand, within GFF6664 at 41.903 kb on + strand, within GFF6664 at 41.903 kb on + strand, within GFF6664 at 41.903 kb on + strand, within GFF6664 at 41.904 kb on - strand, within GFF6664 at 41.904 kb on - strand, within GFF6664 at 41.904 kb on - strand, within GFF6664 at 41.904 kb on - strand, within GFF6664 at 41.904 kb on - strand, within GFF6664 at 41.904 kb on - strand, within GFF6664 at 41.981 kb on + strand, within GFF6664 at 41.981 kb on + strand, within GFF6664 at 41.981 kb on + strand, within GFF6664 at 41.981 kb on + strand, within GFF6664 at 41.981 kb on + strand, within GFF6664 at 41.982 kb on - strand, within GFF6664 at 41.982 kb on - strand, within GFF6664 at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.190 kb on + strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.191 kb on - strand at 42.461 kb on - strand, within GFF6665 at 42.461 kb on - strand, within GFF6665 at 42.461 kb on - strand, within GFF6665 at 42.461 kb on - strand, within GFF6665 at 42.652 kb on + strand, within GFF6665 at 42.652 kb on + strand, within GFF6665 at 42.652 kb on + strand, within GFF6665 at 42.652 kb on + strand, within GFF6665 at 42.652 kb on + strand, within GFF6665 at 42.652 kb on + strand, within GFF6665 at 42.653 kb on - strand, within GFF6665 at 42.653 kb on - strand, within GFF6665 at 42.653 kb on - strand, within GFF6665 at 42.653 kb on - strand, within GFF6665 at 42.653 kb on - strand, within GFF6665 at 42.653 kb on - strand, within GFF6665 at 42.727 kb on + strand, within GFF6665 at 42.728 kb on - strand, within GFF6665 at 42.728 kb on - strand, within GFF6665 at 42.728 kb on - strand, within GFF6665 at 42.728 kb on - strand, within GFF6665 at 42.769 kb on + strand, within GFF6665 at 42.769 kb on + strand, within GFF6665 at 42.769 kb on + strand, within GFF6665 at 42.769 kb on + strand, within GFF6665 at 42.770 kb on - strand, within GFF6665 at 42.770 kb on - strand, within GFF6665 at 42.770 kb on - strand, within GFF6665 at 42.770 kb on - strand, within GFF6665 at 43.024 kb on + strand at 43.024 kb on + strand at 43.024 kb on + strand at 43.024 kb on + strand at 43.024 kb on + strand at 43.024 kb on + strand at 43.024 kb on + strand at 43.024 kb on + strand at 43.025 kb on - strand at 43.025 kb on - strand at 43.025 kb on - strand at 43.025 kb on - strand at 43.025 kb on - strand at 43.025 kb on - strand at 43.025 kb on - strand at 43.025 kb on - strand at 43.025 kb on - strand at 43.025 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 40,743 + -0.8 40,743 + -1.0 40,743 + -0.5 40,744 - -0.8 40,746 + -3.7 40,746 + -0.4 40,746 + +1.3 40,747 - +2.0 40,747 - -0.0 40,747 - -1.1 40,887 + GFF6663 0.11 -2.2 40,887 + GFF6663 0.11 -2.0 40,887 + GFF6663 0.11 -0.2 40,887 + GFF6663 0.11 -1.4 40,887 + GFF6663 0.11 +0.2 40,888 - GFF6663 0.11 -1.0 40,888 - GFF6663 0.11 +1.0 40,888 - GFF6663 0.11 -1.5 40,888 - GFF6663 0.11 -2.2 40,995 + GFF6663 0.22 +1.4 40,995 + GFF6663 0.22 +0.8 40,995 + GFF6663 0.22 -0.6 40,995 + GFF6663 0.22 +0.8 40,995 + GFF6663 0.22 -2.3 40,995 + GFF6663 0.22 -1.0 40,996 - GFF6663 0.22 -1.7 40,996 - GFF6663 0.22 -0.2 40,996 - GFF6663 0.22 +2.0 40,996 - GFF6663 0.22 +0.2 40,996 - GFF6663 0.22 -1.3 40,996 - GFF6663 0.22 -1.0 40,996 - GFF6663 0.22 -1.0 41,073 + GFF6663 0.30 +0.6 41,073 + GFF6663 0.30 -1.5 41,073 + GFF6663 0.30 +0.6 41,073 + GFF6663 0.30 -0.2 41,073 + GFF6663 0.30 +0.3 41,074 - GFF6663 0.30 +0.8 41,074 - GFF6663 0.30 -1.7 41,074 - GFF6663 0.30 -1.0 41,074 - GFF6663 0.30 -1.5 41,074 - GFF6663 0.30 -0.5 41,074 - GFF6663 0.30 -1.7 41,074 - GFF6663 0.30 -1.2 41,076 + GFF6663 0.30 -0.4 41,076 + GFF6663 0.30 +2.9 41,076 + GFF6663 0.30 +0.0 41,076 + GFF6663 0.30 +0.9 41,076 + GFF6663 0.30 -1.7 41,076 + GFF6663 0.30 -1.8 41,076 + GFF6663 0.30 +0.5 41,077 - GFF6663 0.31 +3.5 41,077 - GFF6663 0.31 -2.1 41,077 - GFF6663 0.31 +2.3 41,077 - GFF6663 0.31 -2.4 41,077 - GFF6663 0.31 -1.7 41,077 - GFF6663 0.31 -1.7 41,082 + GFF6663 0.31 -2.3 41,082 + GFF6663 0.31 +2.0 41,082 + GFF6663 0.31 -1.0 41,083 - GFF6663 0.31 +1.3 41,283 + GFF6663 0.52 -0.4 41,283 + GFF6663 0.52 -2.4 41,283 + GFF6663 0.52 -0.8 41,284 - GFF6663 0.52 +1.9 41,284 - GFF6663 0.52 -0.3 41,284 - GFF6663 0.52 -0.0 41,388 + GFF6663 0.63 -0.5 41,403 + GFF6663 0.65 -2.2 41,404 - GFF6663 0.65 -0.8 41,445 + GFF6663 0.69 -1.8 41,445 + GFF6663 0.69 +0.8 41,445 + GFF6663 0.69 -1.9 41,445 + GFF6663 0.69 -2.9 41,445 + GFF6663 0.69 -0.2 41,445 + GFF6663 0.69 -1.4 41,445 + GFF6663 0.69 -0.5 41,445 + GFF6663 0.69 -1.4 41,445 + GFF6663 0.69 -2.6 41,445 + GFF6663 0.69 -1.1 41,445 + GFF6663 0.69 +0.8 41,445 + GFF6663 0.69 -0.9 41,445 + GFF6663 0.69 -0.5 41,445 + GFF6663 0.69 +0.4 41,445 + GFF6663 0.69 +0.5 41,445 + GFF6663 0.69 -0.8 41,445 + GFF6663 0.69 -1.9 41,446 - GFF6663 0.69 -3.1 41,446 - GFF6663 0.69 -1.0 41,446 - GFF6663 0.69 -2.9 41,446 - GFF6663 0.69 -0.9 41,446 - GFF6663 0.69 -0.1 41,446 - GFF6663 0.69 +1.3 41,446 - GFF6663 0.69 +0.6 41,446 - GFF6663 0.69 +2.6 41,446 - GFF6663 0.69 -2.2 41,446 - GFF6663 0.69 -0.2 41,446 - GFF6663 0.69 -1.4 41,446 - GFF6663 0.69 +2.4 41,479 - GFF6663 0.73 +0.6 41,592 + GFF6663 0.84 -2.2 41,592 + GFF6663 0.84 -0.5 41,592 + GFF6663 0.84 +0.2 41,592 + GFF6663 0.84 +0.5 41,592 + GFF6663 0.84 +0.9 41,592 + GFF6663 0.84 -1.2 41,593 - GFF6663 0.84 -2.0 41,593 - GFF6663 0.84 -3.4 41,593 - GFF6663 0.84 -0.8 41,593 - GFF6663 0.84 -2.9 41,593 - GFF6663 0.84 -0.4 41,593 - GFF6663 0.84 -0.2 41,593 - GFF6663 0.84 -0.3 41,593 - GFF6663 0.84 -1.4 41,722 - -1.4 41,722 - -2.4 41,722 - -1.4 41,722 - -0.2 41,768 + GFF6664 0.10 -1.8 41,768 + GFF6664 0.10 -2.7 41,822 + GFF6664 0.28 -3.6 41,822 + GFF6664 0.28 +0.8 41,822 + GFF6664 0.28 -3.0 41,822 + GFF6664 0.28 -0.5 41,822 + GFF6664 0.28 -0.6 41,822 + GFF6664 0.28 -2.9 41,822 + GFF6664 0.28 -2.2 41,822 + GFF6664 0.28 -2.5 41,822 + GFF6664 0.28 -0.8 41,823 - GFF6664 0.28 -1.6 41,823 - GFF6664 0.28 +2.1 41,823 - GFF6664 0.28 -2.1 41,823 - GFF6664 0.28 -0.4 41,823 - GFF6664 0.28 -1.0 41,823 - GFF6664 0.28 -1.5 41,823 - GFF6664 0.28 -3.8 41,823 - GFF6664 0.28 -1.2 41,823 - GFF6664 0.28 -0.7 41,823 - GFF6664 0.28 -1.7 41,823 - GFF6664 0.28 -0.4 41,823 - GFF6664 0.28 +0.3 41,823 - GFF6664 0.28 -0.6 41,823 - GFF6664 0.28 +1.8 41,823 - GFF6664 0.28 -0.9 41,823 - GFF6664 0.28 -1.2 41,823 - GFF6664 0.28 -1.5 41,823 - GFF6664 0.28 -1.4 41,840 + GFF6664 0.34 -2.9 41,840 + GFF6664 0.34 +1.8 41,841 - GFF6664 0.34 -1.2 41,841 - GFF6664 0.34 +1.2 41,841 - GFF6664 0.34 -0.4 41,841 - GFF6664 0.34 -1.0 41,903 + GFF6664 0.55 -0.1 41,903 + GFF6664 0.55 +0.5 41,903 + GFF6664 0.55 -0.2 41,903 + GFF6664 0.55 -0.8 41,903 + GFF6664 0.55 +2.8 41,903 + GFF6664 0.55 -2.5 41,903 + GFF6664 0.55 +2.0 41,904 - GFF6664 0.55 -1.3 41,904 - GFF6664 0.55 +2.2 41,904 - GFF6664 0.55 -1.8 41,904 - GFF6664 0.55 -1.0 41,904 - GFF6664 0.55 +1.3 41,904 - GFF6664 0.55 +1.8 41,981 + GFF6664 0.81 -0.7 41,981 + GFF6664 0.81 -2.3 41,981 + GFF6664 0.81 +1.0 41,981 + GFF6664 0.81 +1.8 41,981 + GFF6664 0.81 -1.2 41,982 - GFF6664 0.81 -1.4 41,982 - GFF6664 0.81 -3.9 42,190 + -2.1 42,190 + -0.2 42,190 + +0.6 42,190 + -2.2 42,190 + -1.0 42,190 + +1.5 42,190 + -2.1 42,190 + +0.3 42,190 + -0.5 42,190 + -0.8 42,190 + -0.8 42,190 + -2.2 42,190 + +0.9 42,190 + +0.0 42,190 + -2.9 42,191 - -0.5 42,191 - -0.8 42,191 - +0.5 42,191 - -2.4 42,191 - -1.7 42,191 - +0.2 42,191 - -0.3 42,191 - -0.5 42,191 - +0.6 42,191 - -1.2 42,191 - -2.2 42,461 - GFF6665 0.36 +0.2 42,461 - GFF6665 0.36 -0.7 42,461 - GFF6665 0.36 -0.7 42,461 - GFF6665 0.36 -1.0 42,652 + GFF6665 0.55 +0.8 42,652 + GFF6665 0.55 +0.6 42,652 + GFF6665 0.55 -1.7 42,652 + GFF6665 0.55 -0.5 42,652 + GFF6665 0.55 +0.4 42,652 + GFF6665 0.55 +0.1 42,653 - GFF6665 0.55 +0.5 42,653 - GFF6665 0.55 -0.4 42,653 - GFF6665 0.55 -1.1 42,653 - GFF6665 0.55 +0.6 42,653 - GFF6665 0.55 -2.7 42,653 - GFF6665 0.55 +0.8 42,727 + GFF6665 0.62 +0.2 42,728 - GFF6665 0.63 -0.8 42,728 - GFF6665 0.63 -3.6 42,728 - GFF6665 0.63 -2.1 42,728 - GFF6665 0.63 -1.0 42,769 + GFF6665 0.67 -0.1 42,769 + GFF6665 0.67 -3.1 42,769 + GFF6665 0.67 +1.7 42,769 + GFF6665 0.67 +1.5 42,770 - GFF6665 0.67 -0.1 42,770 - GFF6665 0.67 +0.6 42,770 - GFF6665 0.67 -0.5 42,770 - GFF6665 0.67 -2.8 43,024 + -0.8 43,024 + +0.8 43,024 + +0.6 43,024 + +0.2 43,024 + -2.1 43,024 + -3.9 43,024 + -1.9 43,024 + +0.5 43,025 - -0.1 43,025 - -0.6 43,025 - +0.6 43,025 - -1.4 43,025 - -4.0 43,025 - -1.2 43,025 - -1.2 43,025 - +1.1 43,025 - +1.1 43,025 - +0.5
Or see this region's nucleotide sequence