Strain Fitness in Variovorax sp. SCN45 around GFF6567

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
6,885	+		GFF6566	0.73	+0.7
6,885	+		GFF6566	0.73	+1.0
6,886	-		GFF6566	0.73	-0.4
6,987	+		GFF6566	0.77	-0.1
6,987	+		GFF6566	0.77	+0.9
6,988	-		GFF6566	0.77	-0.2
7,209	+		GFF6566	0.86	-2.9
7,210	-		GFF6566	0.86	-0.2
7,234	+		GFF6566	0.86	-0.8
7,234	+		GFF6566	0.86	+3.0
7,234	+		GFF6566	0.86	-0.8
7,234	+		GFF6566	0.86	+0.6
7,235	-		GFF6566	0.86	+0.7
7,235	-		GFF6566	0.86	-0.4
7,235	-		GFF6566	0.86	-4.3
7,281	+		GFF6566	0.88	+0.3
7,281	+		GFF6566	0.88	-1.5
7,312	-		GFF6566	0.89	+0.1
7,381	+				-1.5
7,382	-				-1.8
7,625	+				-2.9
7,625	+				-0.0
7,625	+				+2.9
7,625	+				-2.8
7,626	-				-2.1
7,626	-				-1.4
7,626	-				+0.8
7,647	-				+0.2
7,647	-				-1.1
7,647	-				+1.7
7,715	+				+1.6
7,715	+				+2.1
7,715	+				+0.6
7,715	+				-2.0
7,715	+				+0.5
7,715	+				+1.8
7,715	+				-1.5
7,715	+				+1.0
7,715	+				-3.7
7,715	+				-0.7
7,715	+				+0.4
7,716	-				-1.7
7,716	-				-1.6
7,716	-				-0.7
7,716	-				+0.9
7,716	-				+0.5
7,716	-				-1.1
7,716	-				+1.5
7,716	-				+1.9
7,716	-				+0.3
7,772	+		GFF6567	0.11	-1.2
7,773	-		GFF6567	0.11	-2.8
8,171	+		GFF6567	0.35	-0.5
8,172	-		GFF6567	0.35	-0.4
8,172	-		GFF6567	0.35	+0.4
8,172	-		GFF6567	0.35	-0.2
8,195	+		GFF6567	0.36	-1.5
8,195	+		GFF6567	0.36	-2.5
8,196	-		GFF6567	0.36	-0.4
8,196	-		GFF6567	0.36	-1.1
8,196	-		GFF6567	0.36	-0.1
8,196	-		GFF6567	0.36	-1.8
8,324	+		GFF6567	0.44	-1.7
8,324	+		GFF6567	0.44	-1.7
8,324	+		GFF6567	0.44	-1.4
8,324	+		GFF6567	0.44	-0.1
8,324	+		GFF6567	0.44	-3.7
8,324	+		GFF6567	0.44	-2.2
8,324	+		GFF6567	0.44	+0.3
8,324	+		GFF6567	0.44	-0.4
8,324	+		GFF6567	0.44	-0.2
8,324	+		GFF6567	0.44	-0.4
8,324	+		GFF6567	0.44	+1.5
8,325	-		GFF6567	0.44	-0.8
8,325	-		GFF6567	0.44	+1.0
8,325	-		GFF6567	0.44	-0.2
8,325	-		GFF6567	0.44	-1.1
8,325	-		GFF6567	0.44	+0.3
8,325	-		GFF6567	0.44	-2.1
8,325	-		GFF6567	0.44	-1.7
8,325	-		GFF6567	0.44	+0.2
8,325	-		GFF6567	0.44	-0.3
8,325	-		GFF6567	0.44	-1.5
8,360	+		GFF6567	0.46	+2.9
8,361	-		GFF6567	0.46	+1.5
8,609	+		GFF6567	0.61	-2.4
8,610	-		GFF6567	0.61	+0.1
8,610	-		GFF6567	0.61	-0.1
9,264	+				-0.4
9,264	+				-2.4
9,264	+				+0.8
9,264	+				-1.2
9,264	+				-2.2
9,264	+				+1.0
9,264	+				+0.1
9,264	+				-0.4
9,264	+				-2.7
9,265	-				+1.0
9,265	-				-3.0
9,265	-				-2.2
9,265	-				-2.4
9,265	-				+1.9
9,276	+				+0.1
9,447	-				-0.8
9,460	+				-0.7
9,460	+				-2.3
9,460	+				+0.4
9,460	+				+0.7
9,461	-				+0.7
9,516	+				-1.4
9,516	+				+1.0
9,517	-				-1.2
9,632	+				+4.2
9,632	+				+2.9
9,633	-				-1.5
9,655	+				-2.8
9,738	+		GFF6568	0.14	-3.5
9,738	+		GFF6568	0.14	-2.2
9,738	+		GFF6568	0.14	-0.9
9,738	+		GFF6568	0.14	+0.9
9,738	+		GFF6568	0.14	+1.0
9,738	+		GFF6568	0.14	-0.4
9,738	+		GFF6568	0.14	+0.9
9,738	+		GFF6568	0.14	-0.2
9,738	+		GFF6568	0.14	-0.5
9,739	-		GFF6568	0.14	+1.9
9,739	-		GFF6568	0.14	+1.0
9,753	+		GFF6568	0.15	-0.7
9,753	+		GFF6568	0.15	+0.9
9,753	+		GFF6568	0.15	+0.9
9,753	+		GFF6568	0.15	-0.4
9,754	-		GFF6568	0.15	+1.4
9,754	-		GFF6568	0.15	+1.6
9,754	-		GFF6568	0.15	-0.2
9,754	-		GFF6568	0.15	+0.3
9,754	-		GFF6568	0.15	+0.4
9,754	-		GFF6568	0.15	+0.8
9,754	-		GFF6568	0.15	-1.9
9,754	-		GFF6568	0.15	-0.1
9,822	+		GFF6568	0.21	-0.0
9,823	-		GFF6568	0.21	+0.2
9,823	-		GFF6568	0.21	-3.2
9,823	-		GFF6568	0.21	+1.3
9,900	-		GFF6568	0.28	+0.2
10,117	+		GFF6568	0.46	-1.8
10,117	+		GFF6568	0.46	+0.2
10,117	+		GFF6568	0.46	+0.6
10,117	+		GFF6568	0.46	-1.5
10,117	+		GFF6568	0.46	+0.2
10,117	+		GFF6568	0.46	-0.7
10,117	+		GFF6568	0.46	-1.1
10,117	+		GFF6568	0.46	-0.6
10,117	+		GFF6568	0.46	+2.5
10,118	-		GFF6568	0.46	-1.5
10,118	-		GFF6568	0.46	-0.4
10,118	-		GFF6568	0.46	+0.3
10,118	-		GFF6568	0.46	-2.0
10,118	-		GFF6568	0.46	-0.7
10,118	-		GFF6568	0.46	-0.7
10,118	-		GFF6568	0.46	+0.0
10,118	-		GFF6568	0.46	+1.2
10,210	+		GFF6568	0.54	+1.0
10,211	-		GFF6568	0.54	+0.3
10,249	+		GFF6568	0.57	+2.2
10,249	+		GFF6568	0.57	+0.3
10,249	+		GFF6568	0.57	-0.4
10,249	+		GFF6568	0.57	-2.4
10,250	-		GFF6568	0.57	-0.1
10,250	-		GFF6568	0.57	-0.4
10,250	-		GFF6568	0.57	+0.7