Strain Fitness in Variovorax sp. SCN45 around GFF6563

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6563 and GFF6564 overlap by 4 nucleotides GFF6563 - no description, at 85 to 945 GFF6563 GFF6564 - hypothetical protein, at 942 to 3,197 GFF6564 Position (kb) 0 1Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 0.100 kb on + strandat 0.100 kb on + strandat 0.100 kb on + strandat 0.101 kb on - strandat 0.101 kb on - strandat 0.101 kb on - strandat 0.123 kb on - strandat 0.150 kb on - strandat 0.248 kb on + strand, within GFF6563at 0.248 kb on + strand, within GFF6563at 0.248 kb on + strand, within GFF6563at 0.248 kb on + strand, within GFF6563at 0.249 kb on - strand, within GFF6563at 0.249 kb on - strand, within GFF6563at 0.398 kb on + strand, within GFF6563at 0.398 kb on + strand, within GFF6563at 0.398 kb on + strand, within GFF6563at 0.399 kb on - strand, within GFF6563at 0.399 kb on - strand, within GFF6563at 0.541 kb on + strand, within GFF6563at 0.655 kb on + strand, within GFF6563at 0.656 kb on - strand, within GFF6563at 0.656 kb on - strand, within GFF6563at 0.656 kb on - strand, within GFF6563at 0.656 kb on - strand, within GFF6563at 0.656 kb on - strand, within GFF6563at 0.871 kb on + strandat 0.872 kb on - strandat 0.878 kb on + strandat 0.878 kb on + strandat 0.878 kb on + strandat 0.879 kb on - strandat 0.879 kb on - strandat 0.879 kb on - strandat 0.879 kb on - strandat 0.879 kb on - strandat 0.879 kb on - strandat 0.883 kb on - strandat 1.054 kb on + strandat 1.054 kb on + strandat 1.055 kb on - strandat 1.055 kb on - strandat 1.084 kb on - strandat 1.120 kb on + strandat 1.120 kb on + strandat 1.120 kb on + strandat 1.121 kb on - strandat 1.121 kb on - strandat 1.121 kb on - strandat 1.121 kb on - strandat 1.121 kb on - strandat 1.123 kb on + strandat 1.123 kb on + strandat 1.124 kb on - strandat 1.124 kb on - strandat 1.124 kb on - strandat 1.124 kb on - strandat 1.130 kb on + strandat 1.130 kb on + strandat 1.131 kb on - strandat 1.150 kb on + strandat 1.150 kb on + strandat 1.150 kb on + strandat 1.151 kb on - strandat 1.325 kb on + strand, within GFF6564at 1.326 kb on - strand, within GFF6564at 1.340 kb on + strand, within GFF6564at 1.341 kb on - strand, within GFF6564at 1.341 kb on - strand, within GFF6564at 1.341 kb on - strand, within GFF6564at 1.341 kb on - strand, within GFF6564at 1.371 kb on + strand, within GFF6564at 1.402 kb on - strand, within GFF6564at 1.419 kb on + strand, within GFF6564at 1.419 kb on + strand, within GFF6564at 1.420 kb on - strand, within GFF6564at 1.586 kb on + strand, within GFF6564at 1.587 kb on - strand, within GFF6564at 1.823 kb on + strand, within GFF6564at 1.823 kb on + strand, within GFF6564at 1.823 kb on + strand, within GFF6564at 1.824 kb on - strand, within GFF6564at 1.824 kb on - strand, within GFF6564at 1.847 kb on + strand, within GFF6564at 1.848 kb on - strand, within GFF6564at 1.881 kb on + strand, within GFF6564at 1.882 kb on - strand, within GFF6564at 1.934 kb on - strand, within GFF6564

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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100 + +2.4
100 + +0.3
100 + -1.9
101 - -0.4
101 - -0.8
101 - +0.1
123 - -0.7
150 - +1.9
248 + GFF6563 0.19 -0.2
248 + GFF6563 0.19 +1.2
248 + GFF6563 0.19 +1.0
248 + GFF6563 0.19 -0.4
249 - GFF6563 0.19 +1.1
249 - GFF6563 0.19 +0.5
398 + GFF6563 0.36 +2.1
398 + GFF6563 0.36 -0.7
398 + GFF6563 0.36 -0.7
399 - GFF6563 0.36 +0.2
399 - GFF6563 0.36 -1.8
541 + GFF6563 0.53 -0.4
655 + GFF6563 0.66 -1.7
656 - GFF6563 0.66 -0.4
656 - GFF6563 0.66 -2.2
656 - GFF6563 0.66 -2.3
656 - GFF6563 0.66 -1.5
656 - GFF6563 0.66 -0.2
871 + -2.0
872 - +2.1
878 + -0.2
878 + -0.4
878 + +0.3
879 - -1.2
879 - +0.0
879 - -0.8
879 - -1.2
879 - -0.7
879 - -1.6
883 - -2.2
1,054 + +2.3
1,054 + -1.9
1,055 - -1.4
1,055 - +1.1
1,084 - +0.7
1,120 + -1.0
1,120 + +1.6
1,120 + -1.1
1,121 - -0.4
1,121 - +0.3
1,121 - +0.3
1,121 - -0.9
1,121 - -2.4
1,123 + -1.9
1,123 + -2.6
1,124 - -1.5
1,124 - -0.2
1,124 - -0.1
1,124 - -0.5
1,130 + -2.5
1,130 + -0.2
1,131 - +0.1
1,150 + -2.8
1,150 + +0.7
1,150 + +0.3
1,151 - +0.5
1,325 + GFF6564 0.17 +0.3
1,326 - GFF6564 0.17 +1.9
1,340 + GFF6564 0.18 -0.3
1,341 - GFF6564 0.18 +0.4
1,341 - GFF6564 0.18 -1.1
1,341 - GFF6564 0.18 -1.9
1,341 - GFF6564 0.18 +1.3
1,371 + GFF6564 0.19 -0.5
1,402 - GFF6564 0.20 +0.1
1,419 + GFF6564 0.21 +1.2
1,419 + GFF6564 0.21 -2.0
1,420 - GFF6564 0.21 -0.2
1,586 + GFF6564 0.29 +0.3
1,587 - GFF6564 0.29 -0.5
1,823 + GFF6564 0.39 -0.9
1,823 + GFF6564 0.39 -0.8
1,823 + GFF6564 0.39 -1.2
1,824 - GFF6564 0.39 +0.6
1,824 - GFF6564 0.39 -0.9
1,847 + GFF6564 0.40 +0.3
1,848 - GFF6564 0.40 +2.1
1,881 + GFF6564 0.42 -1.8
1,882 - GFF6564 0.42 -1.4
1,934 - GFF6564 0.44 +0.9

Or see this region's nucleotide sequence