Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6557 and GFF6558 are separated by 84 nucleotides GFF6558 and GFF6559 are separated by 94 nucleotides GFF6559 and GFF6560 are separated by 196 nucleotides
GFF6557 - hypothetical protein, at 52,497 to 53,798
GFF6557
GFF6558 - 5'-nucleotidase (EC 3.1.3.5), at 53,883 to 55,712
GFF6558
GFF6559 - hypothetical protein, at 55,807 to 56,280
GFF6559
GFF6560 - no description, at 56,477 to 56,686
GFF6560
Position (kb) 53
54
55
56 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 52.929 kb on + strand, within GFF6557 at 52.929 kb on + strand, within GFF6557 at 52.930 kb on - strand, within GFF6557 at 52.930 kb on - strand, within GFF6557 at 52.962 kb on + strand, within GFF6557 at 52.962 kb on + strand, within GFF6557 at 52.962 kb on + strand, within GFF6557 at 52.962 kb on + strand, within GFF6557 at 52.963 kb on - strand, within GFF6557 at 53.272 kb on + strand, within GFF6557 at 53.272 kb on + strand, within GFF6557 at 53.373 kb on + strand, within GFF6557 at 53.373 kb on + strand, within GFF6557 at 53.373 kb on + strand, within GFF6557 at 53.373 kb on + strand, within GFF6557 at 53.374 kb on - strand, within GFF6557 at 53.374 kb on - strand, within GFF6557 at 53.399 kb on - strand, within GFF6557 at 53.475 kb on + strand, within GFF6557 at 53.475 kb on + strand, within GFF6557 at 53.475 kb on + strand, within GFF6557 at 53.475 kb on + strand, within GFF6557 at 53.476 kb on - strand, within GFF6557 at 53.568 kb on + strand, within GFF6557 at 53.568 kb on + strand, within GFF6557 at 53.568 kb on + strand, within GFF6557 at 53.568 kb on + strand, within GFF6557 at 53.569 kb on - strand, within GFF6557 at 53.757 kb on + strand at 53.758 kb on - strand at 53.859 kb on + strand at 53.860 kb on - strand at 53.860 kb on - strand at 53.863 kb on + strand at 53.863 kb on + strand at 53.904 kb on - strand at 53.950 kb on + strand at 53.950 kb on + strand at 53.950 kb on + strand at 53.951 kb on - strand at 53.951 kb on - strand at 53.951 kb on - strand at 53.951 kb on - strand at 54.061 kb on + strand at 54.061 kb on + strand at 54.061 kb on + strand at 54.061 kb on + strand at 54.062 kb on - strand at 54.062 kb on - strand at 54.139 kb on + strand, within GFF6558 at 54.139 kb on + strand, within GFF6558 at 54.139 kb on + strand, within GFF6558 at 54.139 kb on + strand, within GFF6558 at 54.139 kb on + strand, within GFF6558 at 54.139 kb on + strand, within GFF6558 at 54.139 kb on + strand, within GFF6558 at 54.140 kb on - strand, within GFF6558 at 54.140 kb on - strand, within GFF6558 at 54.140 kb on - strand, within GFF6558 at 54.140 kb on - strand, within GFF6558 at 54.145 kb on + strand, within GFF6558 at 54.145 kb on + strand, within GFF6558 at 54.230 kb on + strand, within GFF6558 at 54.230 kb on + strand, within GFF6558 at 54.258 kb on + strand, within GFF6558 at 54.301 kb on + strand, within GFF6558 at 54.302 kb on - strand, within GFF6558 at 54.526 kb on + strand, within GFF6558 at 54.526 kb on + strand, within GFF6558 at 54.526 kb on + strand, within GFF6558 at 54.526 kb on + strand, within GFF6558 at 54.527 kb on - strand, within GFF6558 at 54.592 kb on + strand, within GFF6558 at 54.592 kb on + strand, within GFF6558 at 54.592 kb on + strand, within GFF6558 at 54.592 kb on + strand, within GFF6558 at 54.592 kb on + strand, within GFF6558 at 54.592 kb on + strand, within GFF6558 at 54.593 kb on - strand, within GFF6558 at 54.593 kb on - strand, within GFF6558 at 54.593 kb on - strand, within GFF6558 at 54.613 kb on + strand, within GFF6558 at 54.613 kb on + strand, within GFF6558 at 54.613 kb on + strand, within GFF6558 at 54.614 kb on - strand, within GFF6558 at 54.614 kb on - strand, within GFF6558 at 54.614 kb on - strand, within GFF6558 at 54.712 kb on + strand, within GFF6558 at 54.764 kb on - strand, within GFF6558 at 54.775 kb on + strand, within GFF6558 at 54.775 kb on + strand, within GFF6558 at 54.775 kb on + strand, within GFF6558 at 54.775 kb on + strand, within GFF6558 at 54.775 kb on + strand, within GFF6558 at 54.776 kb on - strand, within GFF6558 at 54.776 kb on - strand, within GFF6558 at 54.776 kb on - strand, within GFF6558 at 54.776 kb on - strand, within GFF6558 at 54.804 kb on + strand, within GFF6558 at 54.804 kb on + strand, within GFF6558 at 54.805 kb on - strand, within GFF6558 at 54.881 kb on - strand, within GFF6558 at 55.438 kb on + strand, within GFF6558 at 55.438 kb on + strand, within GFF6558 at 55.438 kb on + strand, within GFF6558 at 55.438 kb on + strand, within GFF6558 at 55.438 kb on + strand, within GFF6558 at 55.438 kb on + strand, within GFF6558 at 55.439 kb on - strand, within GFF6558 at 55.439 kb on - strand, within GFF6558 at 55.439 kb on - strand, within GFF6558 at 55.439 kb on - strand, within GFF6558 at 55.439 kb on - strand, within GFF6558 at 55.439 kb on - strand, within GFF6558 at 55.957 kb on + strand, within GFF6559 at 55.957 kb on + strand, within GFF6559 at 56.265 kb on + strand at 56.265 kb on + strand at 56.300 kb on + strand at 56.300 kb on + strand at 56.300 kb on + strand at 56.300 kb on + strand at 56.300 kb on + strand at 56.301 kb on - strand at 56.301 kb on - strand at 56.301 kb on - strand at 56.301 kb on - strand at 56.301 kb on - strand at 56.301 kb on - strand at 56.301 kb on - strand at 56.301 kb on - strand at 56.358 kb on + strand at 56.359 kb on - strand at 56.359 kb on - strand at 56.389 kb on + strand at 56.389 kb on + strand at 56.389 kb on + strand at 56.389 kb on + strand at 56.389 kb on + strand at 56.389 kb on + strand at 56.390 kb on - strand at 56.436 kb on + strand at 56.436 kb on + strand at 56.436 kb on + strand at 56.436 kb on + strand at 56.437 kb on - strand at 56.437 kb on - strand at 56.437 kb on - strand at 56.437 kb on - strand at 56.437 kb on - strand at 56.459 kb on - strand at 56.513 kb on + strand, within GFF6560 at 56.513 kb on + strand, within GFF6560 at 56.513 kb on + strand, within GFF6560 at 56.513 kb on + strand, within GFF6560 at 56.513 kb on + strand, within GFF6560 at 56.513 kb on + strand, within GFF6560 at 56.513 kb on + strand, within GFF6560 at 56.514 kb on - strand, within GFF6560 at 56.514 kb on - strand, within GFF6560 at 56.514 kb on - strand, within GFF6560 at 56.514 kb on - strand, within GFF6560 at 56.611 kb on + strand, within GFF6560 at 56.646 kb on - strand, within GFF6560 at 56.654 kb on + strand, within GFF6560 at 56.655 kb on - strand, within GFF6560 at 56.655 kb on - strand, within GFF6560 at 56.655 kb on - strand, within GFF6560 at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.689 kb on + strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.690 kb on - strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.695 kb on + strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.696 kb on - strand at 56.699 kb on + strand at 56.699 kb on + strand at 56.699 kb on + strand at 56.699 kb on + strand at 56.699 kb on + strand at 56.699 kb on + strand at 56.700 kb on - strand at 56.700 kb on - strand at 56.700 kb on - strand at 56.700 kb on - strand at 56.700 kb on - strand at 56.700 kb on - strand at 56.700 kb on - strand at 56.700 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 52,929 + GFF6557 0.33 -1.3 52,929 + GFF6557 0.33 -1.8 52,930 - GFF6557 0.33 +0.7 52,930 - GFF6557 0.33 -2.5 52,962 + GFF6557 0.36 -0.9 52,962 + GFF6557 0.36 -0.1 52,962 + GFF6557 0.36 -0.6 52,962 + GFF6557 0.36 +0.6 52,963 - GFF6557 0.36 +0.1 53,272 + GFF6557 0.60 +0.5 53,272 + GFF6557 0.60 +3.6 53,373 + GFF6557 0.67 +0.8 53,373 + GFF6557 0.67 +0.6 53,373 + GFF6557 0.67 -0.2 53,373 + GFF6557 0.67 -1.8 53,374 - GFF6557 0.67 -0.7 53,374 - GFF6557 0.67 +0.0 53,399 - GFF6557 0.69 -1.9 53,475 + GFF6557 0.75 -0.7 53,475 + GFF6557 0.75 -1.8 53,475 + GFF6557 0.75 -1.9 53,475 + GFF6557 0.75 -1.6 53,476 - GFF6557 0.75 -0.1 53,568 + GFF6557 0.82 +0.4 53,568 + GFF6557 0.82 +0.3 53,568 + GFF6557 0.82 -0.8 53,568 + GFF6557 0.82 -0.1 53,569 - GFF6557 0.82 -0.2 53,757 + -0.9 53,758 - -2.4 53,859 + -1.9 53,860 - -1.0 53,860 - -1.3 53,863 + +0.3 53,863 + -1.2 53,904 - +0.1 53,950 + +1.0 53,950 + -1.3 53,950 + -0.9 53,951 - -1.6 53,951 - +0.3 53,951 - +2.0 53,951 - -1.7 54,061 + -1.3 54,061 + -0.3 54,061 + -1.8 54,061 + -1.4 54,062 - -0.9 54,062 - -2.3 54,139 + GFF6558 0.14 -1.4 54,139 + GFF6558 0.14 +1.1 54,139 + GFF6558 0.14 -1.2 54,139 + GFF6558 0.14 -1.1 54,139 + GFF6558 0.14 -1.1 54,139 + GFF6558 0.14 -0.0 54,139 + GFF6558 0.14 -0.9 54,140 - GFF6558 0.14 -1.4 54,140 - GFF6558 0.14 -1.9 54,140 - GFF6558 0.14 -4.0 54,140 - GFF6558 0.14 +1.4 54,145 + GFF6558 0.14 +0.3 54,145 + GFF6558 0.14 +0.1 54,230 + GFF6558 0.19 -0.4 54,230 + GFF6558 0.19 -0.4 54,258 + GFF6558 0.20 -2.7 54,301 + GFF6558 0.23 +2.1 54,302 - GFF6558 0.23 -1.8 54,526 + GFF6558 0.35 -0.2 54,526 + GFF6558 0.35 -2.1 54,526 + GFF6558 0.35 -2.8 54,526 + GFF6558 0.35 -1.6 54,527 - GFF6558 0.35 +0.3 54,592 + GFF6558 0.39 -2.2 54,592 + GFF6558 0.39 -0.1 54,592 + GFF6558 0.39 +2.5 54,592 + GFF6558 0.39 -0.4 54,592 + GFF6558 0.39 +0.1 54,592 + GFF6558 0.39 +0.1 54,593 - GFF6558 0.39 +0.1 54,593 - GFF6558 0.39 -1.8 54,593 - GFF6558 0.39 -0.1 54,613 + GFF6558 0.40 -0.2 54,613 + GFF6558 0.40 -1.1 54,613 + GFF6558 0.40 +0.4 54,614 - GFF6558 0.40 +0.6 54,614 - GFF6558 0.40 -0.2 54,614 - GFF6558 0.40 -0.9 54,712 + GFF6558 0.45 +0.3 54,764 - GFF6558 0.48 -0.9 54,775 + GFF6558 0.49 -0.4 54,775 + GFF6558 0.49 -1.4 54,775 + GFF6558 0.49 -2.8 54,775 + GFF6558 0.49 -0.7 54,775 + GFF6558 0.49 -0.6 54,776 - GFF6558 0.49 -0.7 54,776 - GFF6558 0.49 -0.7 54,776 - GFF6558 0.49 -1.9 54,776 - GFF6558 0.49 +1.8 54,804 + GFF6558 0.50 -0.2 54,804 + GFF6558 0.50 -2.9 54,805 - GFF6558 0.50 -1.1 54,881 - GFF6558 0.55 +0.1 55,438 + GFF6558 0.85 +0.6 55,438 + GFF6558 0.85 -1.4 55,438 + GFF6558 0.85 -0.3 55,438 + GFF6558 0.85 +1.1 55,438 + GFF6558 0.85 +0.9 55,438 + GFF6558 0.85 +1.1 55,439 - GFF6558 0.85 -2.9 55,439 - GFF6558 0.85 -0.6 55,439 - GFF6558 0.85 -2.2 55,439 - GFF6558 0.85 -0.9 55,439 - GFF6558 0.85 +0.8 55,439 - GFF6558 0.85 -2.8 55,957 + GFF6559 0.32 -0.4 55,957 + GFF6559 0.32 -1.7 56,265 + -0.1 56,265 + -0.3 56,300 + +1.1 56,300 + +2.2 56,300 + -0.9 56,300 + +0.6 56,300 + -2.3 56,301 - -0.8 56,301 - -0.9 56,301 - +1.1 56,301 - -1.6 56,301 - +1.0 56,301 - -0.5 56,301 - -0.7 56,301 - -0.1 56,358 + +0.4 56,359 - -0.7 56,359 - -1.4 56,389 + -3.5 56,389 + +0.3 56,389 + -2.3 56,389 + -3.2 56,389 + +0.5 56,389 + -2.1 56,390 - -1.1 56,436 + -0.4 56,436 + -0.6 56,436 + -1.6 56,436 + -1.6 56,437 - -1.3 56,437 - -2.4 56,437 - -2.1 56,437 - -0.0 56,437 - -0.6 56,459 - -0.9 56,513 + GFF6560 0.17 +1.9 56,513 + GFF6560 0.17 -1.9 56,513 + GFF6560 0.17 -1.8 56,513 + GFF6560 0.17 -0.4 56,513 + GFF6560 0.17 -0.5 56,513 + GFF6560 0.17 -1.3 56,513 + GFF6560 0.17 +0.1 56,514 - GFF6560 0.18 -3.0 56,514 - GFF6560 0.18 -1.8 56,514 - GFF6560 0.18 +1.7 56,514 - GFF6560 0.18 -0.5 56,611 + GFF6560 0.64 -0.9 56,646 - GFF6560 0.80 +0.2 56,654 + GFF6560 0.84 -0.7 56,655 - GFF6560 0.85 -2.6 56,655 - GFF6560 0.85 -3.9 56,655 - GFF6560 0.85 -2.4 56,689 + +2.3 56,689 + +1.0 56,689 + +2.0 56,689 + -0.1 56,689 + -0.2 56,689 + +0.0 56,689 + -0.9 56,689 + -0.4 56,689 + -0.6 56,689 + -0.7 56,689 + -3.4 56,689 + -1.3 56,690 - +0.9 56,690 - +0.2 56,690 - -1.3 56,690 - -0.9 56,690 - -2.4 56,690 - +1.5 56,690 - -1.3 56,690 - -0.4 56,690 - +0.8 56,690 - -0.2 56,690 - +0.3 56,690 - -0.2 56,690 - -2.2 56,690 - +1.1 56,690 - +0.9 56,695 + +1.3 56,695 + -1.3 56,695 + -1.1 56,695 + +0.3 56,695 + -1.3 56,695 + +0.2 56,695 + -0.7 56,695 + +0.7 56,695 + +0.7 56,695 + +0.6 56,695 + -0.9 56,695 + -0.8 56,695 + -1.6 56,695 + -0.7 56,695 + -0.8 56,695 + +0.9 56,695 + +0.8 56,696 - -2.9 56,696 - -1.4 56,696 - -0.6 56,696 - -0.7 56,696 - -1.2 56,696 - -0.9 56,696 - -1.3 56,696 - -0.0 56,696 - +0.3 56,696 - -1.5 56,696 - -0.0 56,696 - +1.2 56,696 - -1.4 56,696 - -0.1 56,696 - -1.2 56,696 - -0.5 56,696 - +0.8 56,696 - -1.6 56,696 - -2.2 56,696 - -0.2 56,696 - -0.1 56,696 - -1.4 56,699 + -0.4 56,699 + +1.2 56,699 + -0.9 56,699 + +0.0 56,699 + -3.0 56,699 + -0.6 56,700 - -0.4 56,700 - -0.1 56,700 - -0.9 56,700 - -2.1 56,700 - -2.1 56,700 - +0.7 56,700 - +0.3 56,700 - +0.3
Or see this region's nucleotide sequence