Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6533 and GFF6534 are separated by 6 nucleotides GFF6534 and GFF6535 are separated by 39 nucleotides
GFF6533 - Methylphosphotriester-DNA--protein-cysteine S-methyltransferase (EC 2.1.1.n11) / DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 29,188 to 30,774
GFF6533
GFF6534 - Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 30,781 to 31,278
GFF6534
GFF6535 - Permease of the drug/metabolite transporter (DMT) superfamily, at 31,318 to 32,277
GFF6535
Position (kb) 30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 29.850 kb on + strand, within GFF6533 at 29.851 kb on + strand, within GFF6533 at 29.851 kb on + strand, within GFF6533 at 29.852 kb on - strand, within GFF6533 at 29.852 kb on - strand, within GFF6533 at 29.909 kb on + strand, within GFF6533 at 29.909 kb on + strand, within GFF6533 at 29.910 kb on - strand, within GFF6533 at 29.959 kb on + strand, within GFF6533 at 29.959 kb on + strand, within GFF6533 at 29.959 kb on + strand, within GFF6533 at 29.960 kb on - strand, within GFF6533 at 29.960 kb on - strand, within GFF6533 at 29.960 kb on - strand, within GFF6533 at 30.153 kb on + strand, within GFF6533 at 30.154 kb on - strand, within GFF6533 at 30.154 kb on - strand, within GFF6533 at 30.547 kb on + strand, within GFF6533 at 30.547 kb on + strand, within GFF6533 at 30.547 kb on + strand, within GFF6533 at 30.547 kb on + strand, within GFF6533 at 30.548 kb on - strand, within GFF6533 at 30.548 kb on - strand, within GFF6533 at 30.548 kb on - strand, within GFF6533 at 30.548 kb on - strand, within GFF6533 at 30.679 kb on + strand at 30.679 kb on + strand at 30.680 kb on - strand at 30.680 kb on - strand at 30.680 kb on - strand at 30.680 kb on - strand at 30.680 kb on - strand at 30.805 kb on + strand at 30.805 kb on + strand at 30.805 kb on + strand at 30.805 kb on + strand at 30.805 kb on + strand at 30.805 kb on + strand at 30.805 kb on + strand at 30.805 kb on + strand at 30.805 kb on + strand at 30.806 kb on - strand at 30.806 kb on - strand at 30.806 kb on - strand at 30.806 kb on - strand at 30.806 kb on - strand at 31.090 kb on + strand, within GFF6534 at 31.090 kb on + strand, within GFF6534 at 31.090 kb on + strand, within GFF6534 at 31.090 kb on + strand, within GFF6534 at 31.091 kb on - strand, within GFF6534 at 31.091 kb on - strand, within GFF6534 at 31.277 kb on - strand at 31.277 kb on - strand at 31.870 kb on + strand, within GFF6535 at 31.871 kb on - strand, within GFF6535 at 32.062 kb on + strand, within GFF6535 at 32.062 kb on + strand, within GFF6535 at 32.062 kb on + strand, within GFF6535 at 32.062 kb on + strand, within GFF6535 at 32.062 kb on + strand, within GFF6535 at 32.062 kb on + strand, within GFF6535 at 32.063 kb on - strand, within GFF6535 at 32.063 kb on - strand, within GFF6535 at 32.063 kb on - strand, within GFF6535 at 32.063 kb on - strand, within GFF6535 at 32.063 kb on - strand, within GFF6535
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 29,850 + GFF6533 0.42 +0.9 29,851 + GFF6533 0.42 -0.7 29,851 + GFF6533 0.42 -0.4 29,852 - GFF6533 0.42 +1.9 29,852 - GFF6533 0.42 +0.8 29,909 + GFF6533 0.45 +0.2 29,909 + GFF6533 0.45 -2.1 29,910 - GFF6533 0.45 -0.8 29,959 + GFF6533 0.49 -0.8 29,959 + GFF6533 0.49 +1.2 29,959 + GFF6533 0.49 -1.4 29,960 - GFF6533 0.49 +0.4 29,960 - GFF6533 0.49 -0.2 29,960 - GFF6533 0.49 +0.8 30,153 + GFF6533 0.61 +0.6 30,154 - GFF6533 0.61 +1.9 30,154 - GFF6533 0.61 -2.7 30,547 + GFF6533 0.86 -2.1 30,547 + GFF6533 0.86 -1.6 30,547 + GFF6533 0.86 -2.0 30,547 + GFF6533 0.86 +0.2 30,548 - GFF6533 0.86 +1.9 30,548 - GFF6533 0.86 -0.9 30,548 - GFF6533 0.86 -0.8 30,548 - GFF6533 0.86 -2.1 30,679 + -0.1 30,679 + -3.7 30,680 - -0.4 30,680 - +1.9 30,680 - -1.9 30,680 - -0.9 30,680 - +0.4 30,805 + +1.3 30,805 + -2.2 30,805 + +0.8 30,805 + +2.2 30,805 + +1.1 30,805 + +0.4 30,805 + -0.7 30,805 + -0.4 30,805 + +1.2 30,806 - +0.3 30,806 - +1.3 30,806 - -2.9 30,806 - -0.4 30,806 - -0.3 31,090 + GFF6534 0.62 -0.6 31,090 + GFF6534 0.62 -2.5 31,090 + GFF6534 0.62 +0.1 31,090 + GFF6534 0.62 -0.6 31,091 - GFF6534 0.62 -1.0 31,091 - GFF6534 0.62 -0.7 31,277 - +1.9 31,277 - +0.5 31,870 + GFF6535 0.57 +0.5 31,871 - GFF6535 0.58 +0.4 32,062 + GFF6535 0.78 -0.5 32,062 + GFF6535 0.78 -2.0 32,062 + GFF6535 0.78 +1.0 32,062 + GFF6535 0.78 -3.6 32,062 + GFF6535 0.78 -2.1 32,062 + GFF6535 0.78 -3.6 32,063 - GFF6535 0.78 +0.4 32,063 - GFF6535 0.78 -0.4 32,063 - GFF6535 0.78 -0.1 32,063 - GFF6535 0.78 +1.7 32,063 - GFF6535 0.78 +1.5
Or see this region's nucleotide sequence