Strain Fitness in Variovorax sp. SCN45 around GFF6527

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
21,810	-		GFF6525	0.18	-1.4
21,893	+		GFF6525	0.39	-2.8
21,893	+		GFF6525	0.39	-1.0
21,893	+		GFF6525	0.39	-2.8
21,893	+		GFF6525	0.39	+1.9
21,893	+		GFF6525	0.39	+1.7
21,894	-		GFF6525	0.40	+2.0
21,894	-		GFF6525	0.40	+0.8
21,894	-		GFF6525	0.40	-1.6
22,213	+		GFF6526	0.13	-1.3
22,213	+		GFF6526	0.13	-2.3
22,214	-		GFF6526	0.13	-0.1
22,214	-		GFF6526	0.13	+1.3
22,240	+		GFF6526	0.18	+0.7
22,240	+		GFF6526	0.18	+0.1
22,240	+		GFF6526	0.18	-3.4
22,241	-		GFF6526	0.18	+0.0
22,241	-		GFF6526	0.18	+0.1
22,241	-		GFF6526	0.18	+1.5
22,241	-		GFF6526	0.18	-0.2
22,241	-		GFF6526	0.18	+0.2
22,252	+		GFF6526	0.20	-0.9
22,252	+		GFF6526	0.20	+0.1
22,253	-		GFF6526	0.20	+0.7
22,253	-		GFF6526	0.20	+1.7
22,253	-		GFF6526	0.20	+3.0
22,253	-		GFF6526	0.20	+0.2
22,270	+		GFF6526	0.23	-1.2
22,270	+		GFF6526	0.23	-0.1
22,270	+		GFF6526	0.23	+0.7
22,271	-		GFF6526	0.23	-1.4
22,271	-		GFF6526	0.23	+1.3
22,271	-		GFF6526	0.23	+0.3
22,271	-		GFF6526	0.23	-2.5
22,312	+		GFF6526	0.31	-0.5
22,312	+		GFF6526	0.31	-2.4
22,312	+		GFF6526	0.31	-1.0
22,312	+		GFF6526	0.31	+1.2
22,312	+		GFF6526	0.31	-0.6
22,313	-		GFF6526	0.31	-0.0
22,313	-		GFF6526	0.31	-0.1
22,313	-		GFF6526	0.31	-1.1
22,313	-		GFF6526	0.31	-0.4
22,313	-		GFF6526	0.31	-1.8
22,378	+		GFF6526	0.43	-1.8
22,378	+		GFF6526	0.43	+1.8
22,379	-		GFF6526	0.43	-2.9
22,379	-		GFF6526	0.43	-1.7
22,379	-		GFF6526	0.43	+0.0
22,379	-		GFF6526	0.43	-0.0
22,379	-		GFF6526	0.43	+0.9
22,381	+		GFF6526	0.43	-0.7
22,381	+		GFF6526	0.43	+1.9
22,381	+		GFF6526	0.43	-0.3
22,381	+		GFF6526	0.43	+0.4
22,381	+		GFF6526	0.43	-2.2
22,381	+		GFF6526	0.43	+0.9
22,381	+		GFF6526	0.43	-2.0
22,381	+		GFF6526	0.43	-1.4
22,381	+		GFF6526	0.43	+0.9
22,381	+		GFF6526	0.43	-1.6
22,382	-		GFF6526	0.43	+0.1
22,382	-		GFF6526	0.43	-0.4
22,382	-		GFF6526	0.43	-2.8
22,382	-		GFF6526	0.43	-0.9
22,382	-		GFF6526	0.43	+1.5
22,382	-		GFF6526	0.43	+1.7
22,382	-		GFF6526	0.43	+0.6
22,382	-		GFF6526	0.43	-0.7
22,396	+		GFF6526	0.46	-0.4
22,397	-		GFF6526	0.46	+0.7
22,552	+		GFF6526	0.74	-0.9
22,552	+		GFF6526	0.74	+3.3
22,553	-		GFF6526	0.74	-1.4
22,553	-		GFF6526	0.74	-0.8
22,553	-		GFF6526	0.74	-1.8
22,582	+		GFF6526	0.80	-0.1
22,768	-				-1.9
22,772	+				-1.0
22,772	+				+0.3
22,773	-				+0.7
22,790	+				-3.2
22,986	+		GFF6527	0.28	-0.8
22,986	+		GFF6527	0.28	-0.1
22,986	+		GFF6527	0.28	+1.3
22,987	-		GFF6527	0.28	+0.5
22,987	-		GFF6527	0.28	-0.7
22,987	-		GFF6527	0.28	+0.0
22,987	-		GFF6527	0.28	-2.7
23,049	-		GFF6527	0.37	-0.9
23,106	+		GFF6527	0.46	-1.6
23,106	+		GFF6527	0.46	+0.3
23,107	-		GFF6527	0.46	+1.6
23,211	+		GFF6527	0.61	-0.0
23,212	-		GFF6527	0.61	+0.3
23,316	+		GFF6527	0.77	-1.3
23,316	+		GFF6527	0.77	-2.1
23,316	+		GFF6527	0.77	+0.3
23,316	+		GFF6527	0.77	-1.4
23,317	-		GFF6527	0.77	-2.8
23,317	-		GFF6527	0.77	+0.0
23,317	-		GFF6527	0.77	+2.0
23,317	-		GFF6527	0.77	-2.3
23,317	-		GFF6527	0.77	-1.3
23,317	-		GFF6527	0.77	-2.6
23,317	-		GFF6527	0.77	-2.0
23,317	-		GFF6527	0.77	-0.4
23,317	-		GFF6527	0.77	-0.1
23,317	-		GFF6527	0.77	-2.0
23,409	+				+0.3
23,409	+				+0.6
23,409	+				-0.7
23,410	-				-1.6
23,410	-				-2.6
23,410	-				+1.0
23,410	-				+0.6
23,439	+				-2.7
23,439	+				+0.9
23,439	+				-2.0
23,439	+				-0.9
23,439	+				-0.6
23,440	-				-1.7
23,440	-				+1.2
23,440	-				+3.2
23,440	-				-1.9
23,521	+				+0.4
23,522	-				-1.6
23,522	-				-0.1
23,684	+		GFF6528	0.18	-1.1
23,684	+		GFF6528	0.18	-3.4
23,684	+		GFF6528	0.18	-3.1
23,684	+		GFF6528	0.18	-0.9
23,684	+		GFF6528	0.18	-1.9
23,685	-		GFF6528	0.18	-2.2
23,685	-		GFF6528	0.18	-0.8
23,685	-		GFF6528	0.18	-2.7
23,685	-		GFF6528	0.18	-1.1
23,685	-		GFF6528	0.18	-2.9
23,685	-		GFF6528	0.18	-2.0
23,685	-		GFF6528	0.18	-4.0
23,685	-		GFF6528	0.18	-1.9
23,685	-		GFF6528	0.18	-1.8