Strain Fitness in Variovorax sp. SCN45 around GFF6503
Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Community=Locust bean gum; Passage=4 |
|---|---|---|---|---|---|
| remove | |||||
| 71 | + | +0.3 | |||
| 71 | + | -1.4 | |||
| 94 | - | +0.6 | |||
| 111 | + | +0.9 | |||
| 191 | - | GFF6503 | 0.33 | -1.6 | |
| 191 | - | GFF6503 | 0.33 | +0.5 | |
| 191 | - | GFF6503 | 0.33 | -0.9 | |
| 264 | + | GFF6503 | 0.60 | -0.2 | |
| 264 | + | GFF6503 | 0.60 | -0.9 | |
| 264 | + | GFF6503 | 0.60 | +0.9 | |
| 265 | - | GFF6503 | 0.61 | -2.5 | |
| 265 | - | GFF6503 | 0.61 | -1.6 | |
| 265 | - | GFF6503 | 0.61 | -0.2 | |
| 333 | + | GFF6503 | 0.86 | -0.3 | |
| 333 | + | GFF6503 | 0.86 | -1.8 | |
| 333 | + | GFF6503 | 0.86 | -1.7 | |
| 334 | - | GFF6503 | 0.87 | -1.4 | |
| 334 | - | GFF6503 | 0.87 | +0.3 | |
| 334 | - | GFF6503 | 0.87 | -0.1 | |
| 366 | + | +0.5 | |||
| 366 | + | +0.1 | |||
| 367 | - | +1.1 | |||
| 367 | - | +0.2 | |||
| 555 | + | GFF6504 | 0.25 | +0.4 | |
| 556 | - | GFF6504 | 0.26 | +0.4 | |
| 556 | - | GFF6504 | 0.26 | +0.6 | |
| 556 | - | GFF6504 | 0.26 | -3.1 | |
| 657 | + | GFF6504 | 0.39 | -1.7 | |
| 657 | + | GFF6504 | 0.39 | -2.4 | |
| 657 | + | GFF6504 | 0.39 | -1.1 | |
| 658 | - | GFF6504 | 0.39 | -0.0 | |
| 658 | - | GFF6504 | 0.39 | -1.4 | |
| 779 | - | GFF6504 | 0.55 | +1.0 | |
| 795 | + | GFF6504 | 0.58 | +0.4 | |
| 795 | + | GFF6504 | 0.58 | -1.9 | |
| 796 | - | GFF6504 | 0.58 | -2.0 | |
| 796 | - | GFF6504 | 0.58 | -1.0 | |
| 796 | - | GFF6504 | 0.58 | -0.5 | |
| 796 | - | GFF6504 | 0.58 | -2.5 | |
| 796 | - | GFF6504 | 0.58 | +0.3 | |
| 932 | + | GFF6504 | 0.76 | +1.9 | |
| 933 | - | GFF6504 | 0.76 | -0.9 | |
| 987 | - | GFF6504 | 0.83 | -1.1 | |
| 987 | - | GFF6504 | 0.83 | -1.6 | |
| 988 | + | GFF6504 | 0.83 | +0.5 | |
| 988 | + | GFF6504 | 0.83 | +0.2 | |
| 988 | + | GFF6504 | 0.83 | -0.4 | |
| 988 | + | GFF6504 | 0.83 | -1.6 | |
| 988 | + | GFF6504 | 0.83 | -1.7 | |
| 988 | + | GFF6504 | 0.83 | -4.4 | |
| 988 | + | GFF6504 | 0.83 | +1.1 | |
| 989 | - | GFF6504 | 0.84 | -1.6 | |
| 989 | - | GFF6504 | 0.84 | +1.4 | |
| 989 | - | GFF6504 | 0.84 | -1.3 | |
| 989 | - | GFF6504 | 0.84 | -1.4 | |
| 989 | - | GFF6504 | 0.84 | -0.0 | |
| 989 | - | GFF6504 | 0.84 | -0.9 | |
| 994 | - | GFF6504 | 0.84 | +1.9 | |
| 1,045 | + | -0.9 | |||
| 1,046 | - | -2.8 | |||
| 1,099 | + | +0.1 | |||
| 1,339 | - | GFF6505 | 0.54 | +0.9 | |
| 1,339 | - | GFF6505 | 0.54 | -1.9 |
Or see this region's nucleotide sequence