Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF649 and GFF650 overlap by 8 nucleotides GFF650 and GFF651 overlap by 8 nucleotides
GFF649 - no description, at 698,909 to 701,443
GFF649
GFF650 - Response regulator, at 701,436 to 701,894
GFF650
GFF651 - Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-), at 701,887 to 704,175
GFF651
Position (kb) 701
702 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 700.584 kb on + strand, within GFF649 at 700.584 kb on + strand, within GFF649 at 700.584 kb on + strand, within GFF649 at 700.584 kb on + strand, within GFF649 at 700.585 kb on - strand, within GFF649 at 700.740 kb on + strand, within GFF649 at 700.740 kb on + strand, within GFF649 at 700.740 kb on + strand, within GFF649 at 700.740 kb on + strand, within GFF649 at 700.741 kb on - strand, within GFF649 at 700.741 kb on - strand, within GFF649 at 700.741 kb on - strand, within GFF649 at 701.103 kb on + strand, within GFF649 at 701.103 kb on + strand, within GFF649 at 701.104 kb on - strand, within GFF649 at 701.104 kb on - strand, within GFF649 at 701.104 kb on - strand, within GFF649 at 701.241 kb on + strand at 701.241 kb on + strand at 701.438 kb on - strand at 701.557 kb on + strand, within GFF650 at 701.557 kb on + strand, within GFF650 at 701.557 kb on + strand, within GFF650 at 701.557 kb on + strand, within GFF650 at 701.557 kb on + strand, within GFF650 at 701.557 kb on + strand, within GFF650 at 701.557 kb on + strand, within GFF650 at 701.558 kb on - strand, within GFF650 at 701.558 kb on - strand, within GFF650 at 701.558 kb on - strand, within GFF650 at 701.558 kb on - strand, within GFF650 at 701.558 kb on - strand, within GFF650 at 701.579 kb on - strand, within GFF650 at 701.579 kb on - strand, within GFF650 at 701.579 kb on - strand, within GFF650 at 701.767 kb on + strand, within GFF650 at 701.767 kb on + strand, within GFF650 at 701.767 kb on + strand, within GFF650 at 701.768 kb on - strand, within GFF650 at 701.888 kb on + strand at 701.888 kb on + strand at 701.889 kb on - strand at 701.889 kb on - strand at 701.889 kb on - strand at 701.889 kb on - strand at 701.889 kb on - strand at 702.119 kb on + strand, within GFF651 at 702.119 kb on + strand, within GFF651 at 702.119 kb on + strand, within GFF651 at 702.119 kb on + strand, within GFF651 at 702.119 kb on + strand, within GFF651 at 702.119 kb on + strand, within GFF651 at 702.120 kb on - strand, within GFF651 at 702.120 kb on - strand, within GFF651 at 702.488 kb on + strand, within GFF651 at 702.489 kb on - strand, within GFF651 at 702.545 kb on + strand, within GFF651 at 702.545 kb on + strand, within GFF651 at 702.545 kb on + strand, within GFF651 at 702.546 kb on - strand, within GFF651 at 702.546 kb on - strand, within GFF651 at 702.593 kb on + strand, within GFF651 at 702.594 kb on - strand, within GFF651 at 702.594 kb on - strand, within GFF651 at 702.594 kb on - strand, within GFF651
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 700,584 + GFF649 0.66 -0.7 700,584 + GFF649 0.66 +0.7 700,584 + GFF649 0.66 -0.8 700,584 + GFF649 0.66 -1.5 700,585 - GFF649 0.66 -2.8 700,740 + GFF649 0.72 -1.2 700,740 + GFF649 0.72 +3.2 700,740 + GFF649 0.72 -3.7 700,740 + GFF649 0.72 -1.3 700,741 - GFF649 0.72 +1.7 700,741 - GFF649 0.72 +0.2 700,741 - GFF649 0.72 -0.7 701,103 + GFF649 0.87 +0.2 701,103 + GFF649 0.87 -0.4 701,104 - GFF649 0.87 -0.4 701,104 - GFF649 0.87 -0.3 701,104 - GFF649 0.87 -0.6 701,241 + -0.5 701,241 + -2.4 701,438 - -2.9 701,557 + GFF650 0.26 -0.5 701,557 + GFF650 0.26 +0.1 701,557 + GFF650 0.26 +2.5 701,557 + GFF650 0.26 -1.1 701,557 + GFF650 0.26 -3.0 701,557 + GFF650 0.26 -1.3 701,557 + GFF650 0.26 -1.3 701,558 - GFF650 0.27 +1.1 701,558 - GFF650 0.27 -0.7 701,558 - GFF650 0.27 -1.8 701,558 - GFF650 0.27 +0.7 701,558 - GFF650 0.27 -0.6 701,579 - GFF650 0.31 -1.9 701,579 - GFF650 0.31 -2.6 701,579 - GFF650 0.31 -0.7 701,767 + GFF650 0.72 -0.3 701,767 + GFF650 0.72 +0.0 701,767 + GFF650 0.72 -1.3 701,768 - GFF650 0.72 -1.7 701,888 + +2.2 701,888 + +0.5 701,889 - +1.7 701,889 - +0.7 701,889 - +0.1 701,889 - -0.3 701,889 - -0.9 702,119 + GFF651 0.10 -0.8 702,119 + GFF651 0.10 -0.5 702,119 + GFF651 0.10 -2.7 702,119 + GFF651 0.10 +3.5 702,119 + GFF651 0.10 -2.3 702,119 + GFF651 0.10 -1.5 702,120 - GFF651 0.10 -1.1 702,120 - GFF651 0.10 -1.1 702,488 + GFF651 0.26 -2.2 702,489 - GFF651 0.26 -1.4 702,545 + GFF651 0.29 +2.2 702,545 + GFF651 0.29 +0.7 702,545 + GFF651 0.29 +0.3 702,546 - GFF651 0.29 -1.3 702,546 - GFF651 0.29 +2.8 702,593 + GFF651 0.31 -0.7 702,594 - GFF651 0.31 +2.0 702,594 - GFF651 0.31 +1.7 702,594 - GFF651 0.31 +0.1
Or see this region's nucleotide sequence