Strain Fitness in Variovorax sp. SCN45 around GFF6481

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
59,219	+		GFF6480	0.16	-0.8
59,219	+		GFF6480	0.16	-0.9
59,220	-		GFF6480	0.16	-2.1
59,220	-		GFF6480	0.16	+1.8
59,220	-		GFF6480	0.16	-2.4
59,220	-		GFF6480	0.16	-0.5
59,220	-		GFF6480	0.16	-2.1
59,220	-		GFF6480	0.16	-2.8
59,220	-		GFF6480	0.16	-0.4
59,220	-		GFF6480	0.16	-0.4
59,226	-		GFF6480	0.17	+1.9
59,351	+		GFF6480	0.31	-0.7
59,351	+		GFF6480	0.31	-0.2
59,351	+		GFF6480	0.31	-2.3
59,352	-		GFF6480	0.31	-1.2
59,378	+		GFF6480	0.34	+0.9
59,378	+		GFF6480	0.34	-0.7
59,379	-		GFF6480	0.34	-0.1
59,379	-		GFF6480	0.34	-0.9
59,379	-		GFF6480	0.34	-1.4
59,400	-		GFF6480	0.36	+0.3
59,400	-		GFF6480	0.36	+0.9
59,411	+		GFF6480	0.37	-1.4
59,412	-		GFF6480	0.37	-1.7
59,852	+		GFF6480	0.86	+1.5
59,853	-		GFF6480	0.86	-2.4
59,853	-		GFF6480	0.86	-0.4
59,853	-		GFF6480	0.86	+0.6
60,030	+				-1.0
60,030	+				-1.4
60,031	-				-1.1
60,031	-				-2.1
60,031	-				-2.4
60,031	-				+0.0
60,043	+				+0.1
60,043	+				-1.8
60,044	-				+2.1
60,350	+		GFF6481	0.21	-1.8
60,350	+		GFF6481	0.21	+1.3
60,351	-		GFF6481	0.21	-0.8
60,351	-		GFF6481	0.21	-0.7
60,422	+		GFF6481	0.27	-0.7
60,422	+		GFF6481	0.27	-0.7
60,422	+		GFF6481	0.27	-0.1
60,423	-		GFF6481	0.27	-1.9
60,423	-		GFF6481	0.27	-2.3
60,423	-		GFF6481	0.27	-4.1
60,423	-		GFF6481	0.27	+1.9
60,431	+		GFF6481	0.28	-0.7
60,432	-		GFF6481	0.28	-1.5
60,500	+		GFF6481	0.34	+0.1
60,500	+		GFF6481	0.34	+1.9
60,500	+		GFF6481	0.34	-2.2
60,500	+		GFF6481	0.34	+1.7
60,500	+		GFF6481	0.34	+1.3
60,500	+		GFF6481	0.34	-0.5
60,500	+		GFF6481	0.34	+1.1
60,501	-		GFF6481	0.34	+0.2
60,501	-		GFF6481	0.34	-2.8
60,501	-		GFF6481	0.34	+1.2
60,501	-		GFF6481	0.34	-0.1
60,539	+		GFF6481	0.38	-0.1
60,539	+		GFF6481	0.38	+1.5
60,540	-		GFF6481	0.38	+0.8
60,540	-		GFF6481	0.38	+0.9
60,557	+		GFF6481	0.39	-1.1
60,557	+		GFF6481	0.39	+1.1
60,557	+		GFF6481	0.39	+1.3
60,558	-		GFF6481	0.40	-1.1
60,558	-		GFF6481	0.40	+0.5
60,558	-		GFF6481	0.40	+1.9
60,773	+		GFF6481	0.59	-2.3
60,794	+		GFF6481	0.61	+0.3
60,794	+		GFF6481	0.61	-1.1
60,794	+		GFF6481	0.61	-2.5
60,821	+		GFF6481	0.63	-0.5
60,821	+		GFF6481	0.63	+0.2
60,821	+		GFF6481	0.63	-2.6
60,821	+		GFF6481	0.63	-2.1
60,821	+		GFF6481	0.63	-0.4
60,821	+		GFF6481	0.63	+0.3
60,822	-		GFF6481	0.63	+0.4
60,822	-		GFF6481	0.63	-0.8
60,822	-		GFF6481	0.63	-0.5
60,869	+		GFF6481	0.67	-1.4
60,869	+		GFF6481	0.67	-0.7
60,869	+		GFF6481	0.67	-0.1
60,870	-		GFF6481	0.68	+0.3
60,870	-		GFF6481	0.68	+0.4
60,870	-		GFF6481	0.68	+1.3
60,930	-		GFF6481	0.73	-0.4
60,936	-		GFF6481	0.73	-2.2
60,936	-		GFF6481	0.73	-0.3
60,936	-		GFF6481	0.73	-1.0
60,936	-		GFF6481	0.73	+1.3
61,046	+		GFF6481	0.83	+0.7
61,047	-		GFF6481	0.83	-2.7
61,047	-		GFF6481	0.83	+1.7
61,076	+		GFF6481	0.86	-0.7
61,076	+		GFF6481	0.86	+0.7
61,077	-		GFF6481	0.86	-0.5
61,077	-		GFF6481	0.86	-0.9
61,210	+				-0.7
61,211	-				+1.3
61,241	+				-2.3
61,241	+				+1.3
61,242	-				-0.2
61,242	-				+0.4
61,242	-				+0.2
61,242	-				-1.3
61,242	-				-1.0
61,242	-				-0.8
61,242	-				-0.6
61,355	+		GFF6482	0.12	-0.3
61,356	-		GFF6482	0.12	+0.3
61,356	-		GFF6482	0.12	-0.2
61,451	+		GFF6482	0.27	-0.9
61,451	+		GFF6482	0.27	+0.0
61,451	+		GFF6482	0.27	+0.5
61,451	+		GFF6482	0.27	-3.5
61,451	+		GFF6482	0.27	-1.5
61,452	-		GFF6482	0.28	+0.6
61,452	-		GFF6482	0.28	-1.2
61,457	+		GFF6482	0.28	+2.3
61,458	-		GFF6482	0.29	+1.1
61,458	-		GFF6482	0.29	-1.0
61,490	+		GFF6482	0.34	-2.4
61,692	-		GFF6482	0.66	+2.4