Strain Fitness in Variovorax sp. SCN45 around GFF6471

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
47,115	-		GFF6470	0.31	-0.9
47,134	+		GFF6470	0.33	+0.1
47,135	-		GFF6470	0.33	-1.1
47,135	-		GFF6470	0.33	-0.5
47,135	-		GFF6470	0.33	-0.7
47,183	+		GFF6470	0.36	-1.7
47,187	-		GFF6470	0.37	+0.3
47,285	+		GFF6470	0.44	-2.1
47,285	+		GFF6470	0.44	+1.3
47,285	+		GFF6470	0.44	+0.0
47,285	+		GFF6470	0.44	+1.5
47,286	-		GFF6470	0.44	+0.0
47,286	-		GFF6470	0.44	-1.2
47,402	+		GFF6470	0.54	-0.6
47,402	+		GFF6470	0.54	+1.3
47,403	-		GFF6470	0.54	+0.9
47,403	-		GFF6470	0.54	-0.2
47,403	-		GFF6470	0.54	-0.1
47,450	+		GFF6470	0.57	+0.3
47,450	+		GFF6470	0.57	+2.3
47,450	+		GFF6470	0.57	+0.4
47,451	-		GFF6470	0.57	+0.5
47,478	-		GFF6470	0.59	+0.3
47,478	-		GFF6470	0.59	-1.4
47,504	+		GFF6470	0.62	+1.9
47,504	+		GFF6470	0.62	-0.7
47,504	+		GFF6470	0.62	-0.9
47,504	+		GFF6470	0.62	-1.9
47,505	-		GFF6470	0.62	-0.4
47,505	-		GFF6470	0.62	-1.1
47,505	-		GFF6470	0.62	-0.1
47,505	-		GFF6470	0.62	-1.1
47,505	-		GFF6470	0.62	-0.9
47,505	-		GFF6470	0.62	-0.2
47,945	+				-1.2
47,945	+				-0.6
47,945	+				-1.2
47,945	+				-0.1
47,945	+				-0.9
47,945	+				-0.6
47,946	-				+0.2
47,946	-				+3.1
47,946	-				+1.9
47,946	-				-2.5
47,946	-				-1.0
47,946	-				-0.4
47,946	-				-0.7
47,946	-				-0.6
47,946	-				-0.1
47,984	+				-1.7
47,985	-				+2.2
47,993	+				+0.5
47,993	+				-0.3
47,993	+				-0.2
47,993	+				+0.6
47,993	+				-0.4
47,994	-				+0.3
47,994	-				-0.7
47,994	-				-2.4
48,009	-				-1.1
48,009	-				-0.5
48,071	+		GFF6471	0.11	-0.5
48,071	+		GFF6471	0.11	+0.2
48,399	-		GFF6471	0.53	+1.1
48,399	-		GFF6471	0.53	+0.1
48,399	-		GFF6471	0.53	-0.0
48,823	+				-0.1
48,823	+				+2.1
48,823	+				-1.7
48,823	+				-0.5
48,823	+				+1.8
48,823	+				-2.8
48,823	+				-0.3
48,823	+				-0.2
48,824	-				-1.1
48,824	-				+0.9
48,824	-				+1.1
48,824	-				+0.5
48,824	-				+0.3
48,824	-				-1.7
48,824	-				-2.9
48,824	-				-1.1
48,824	-				+0.0
48,824	-				-1.3
48,917	+				-2.7
48,917	+				-0.1
48,968	+				+0.6
48,968	+				+0.0
48,969	-				-0.6
48,974	+				-1.2
48,974	+				-1.5
48,974	+				+0.6
48,974	+				+0.3
48,974	+				-0.4
48,975	-				+0.7
48,975	-				+1.9
48,975	-				-1.7
48,975	-				+0.4
48,975	-				+0.3
48,975	-				-2.9
49,046	+		GFF6472	0.15	-2.3
49,047	-		GFF6472	0.15	-2.5
49,047	-		GFF6472	0.15	-3.6
49,047	-		GFF6472	0.15	-1.4
49,047	-		GFF6472	0.15	-3.0
49,136	+		GFF6472	0.23	-0.7
49,136	+		GFF6472	0.23	+0.3
49,136	+		GFF6472	0.23	+0.1
49,136	+		GFF6472	0.23	+0.8
49,136	+		GFF6472	0.23	+1.1
49,136	+		GFF6472	0.23	-0.6
49,136	+		GFF6472	0.23	-1.5
49,136	+		GFF6472	0.23	+0.1
49,136	+		GFF6472	0.23	+0.8
49,136	+		GFF6472	0.23	+1.1
49,137	-		GFF6472	0.23	-1.4
49,137	-		GFF6472	0.23	-3.1
49,137	-		GFF6472	0.23	+0.9
49,137	-		GFF6472	0.23	-2.8
49,137	-		GFF6472	0.23	-0.9
49,137	-		GFF6472	0.23	+2.4
49,137	-		GFF6472	0.23	-0.2
49,188	-		GFF6472	0.27	+1.9
49,337	+		GFF6472	0.40	+0.2
49,337	+		GFF6472	0.40	+0.1
49,337	+		GFF6472	0.40	-0.1
49,337	+		GFF6472	0.40	-0.1
49,337	+		GFF6472	0.40	-0.9
49,338	-		GFF6472	0.40	-3.1
49,338	-		GFF6472	0.40	-1.4
49,526	+		GFF6472	0.56	+1.2
49,697	+		GFF6472	0.70	+1.6
49,697	+		GFF6472	0.70	-2.7
49,698	-		GFF6472	0.70	+2.1