Strain Fitness in Variovorax sp. SCN45 around GFF6308

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6306 and GFF6307 overlap by 22 nucleotidesGFF6307 and GFF6308 are separated by 114 nucleotidesGFF6308 and GFF6309 are separated by 25 nucleotidesGFF6309 and GFF6310 are separated by 7 nucleotides GFF6306 - Uncharacterized MFS-type transporter, at 96,631 to 97,950 GFF6306 GFF6307 - hypothetical protein, at 97,929 to 98,144 GFF6307 GFF6308 - no description, at 98,259 to 98,534 GFF6308 GFF6309 - Secreted and surface protein containing fasciclin-like repeats, at 98,560 to 99,138 GFF6309 GFF6310 - Transcriptional regulator, LysR family, at 99,146 to 100,072 GFF6310 Position (kb) 98 99Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 97.402 kb on + strand, within GFF6306at 97.666 kb on + strand, within GFF6306at 97.666 kb on + strand, within GFF6306at 97.666 kb on + strand, within GFF6306at 97.666 kb on + strand, within GFF6306at 97.666 kb on + strand, within GFF6306at 97.666 kb on + strand, within GFF6306at 97.666 kb on + strand, within GFF6306at 97.666 kb on + strand, within GFF6306at 97.666 kb on + strand, within GFF6306at 97.667 kb on - strand, within GFF6306at 97.667 kb on - strand, within GFF6306at 97.667 kb on - strand, within GFF6306at 97.667 kb on - strand, within GFF6306at 97.667 kb on - strand, within GFF6306at 97.667 kb on - strand, within GFF6306at 97.667 kb on - strand, within GFF6306at 97.667 kb on - strand, within GFF6306at 97.667 kb on - strand, within GFF6306at 97.684 kb on + strand, within GFF6306at 97.685 kb on - strand, within GFF6306at 97.685 kb on - strand, within GFF6306at 97.685 kb on - strand, within GFF6306at 97.685 kb on - strand, within GFF6306at 97.699 kb on + strand, within GFF6306at 97.699 kb on + strand, within GFF6306at 97.699 kb on + strand, within GFF6306at 97.699 kb on + strand, within GFF6306at 97.699 kb on + strand, within GFF6306at 97.700 kb on - strand, within GFF6306at 97.700 kb on - strand, within GFF6306at 97.700 kb on - strand, within GFF6306at 97.705 kb on + strand, within GFF6306at 97.705 kb on + strand, within GFF6306at 97.705 kb on + strand, within GFF6306at 97.705 kb on + strand, within GFF6306at 97.705 kb on + strand, within GFF6306at 97.705 kb on + strand, within GFF6306at 97.705 kb on + strand, within GFF6306at 97.705 kb on + strand, within GFF6306at 97.705 kb on + strand, within GFF6306at 97.705 kb on + strand, within GFF6306at 97.706 kb on - strand, within GFF6306at 97.706 kb on - strand, within GFF6306at 97.706 kb on - strand, within GFF6306at 97.706 kb on - strand, within GFF6306at 97.706 kb on - strand, within GFF6306at 97.706 kb on - strand, within GFF6306at 97.706 kb on - strand, within GFF6306at 97.706 kb on - strand, within GFF6306at 97.706 kb on - strand, within GFF6306at 97.720 kb on + strand, within GFF6306at 97.720 kb on + strand, within GFF6306at 97.948 kb on + strandat 97.949 kb on - strandat 98.092 kb on + strand, within GFF6307at 98.092 kb on + strand, within GFF6307at 98.093 kb on - strand, within GFF6307at 98.093 kb on - strand, within GFF6307at 98.093 kb on - strand, within GFF6307at 98.093 kb on - strand, within GFF6307at 98.421 kb on + strand, within GFF6308at 98.477 kb on + strand, within GFF6308at 98.477 kb on + strand, within GFF6308at 98.477 kb on + strand, within GFF6308at 98.478 kb on - strand, within GFF6308at 98.686 kb on + strand, within GFF6309at 98.686 kb on + strand, within GFF6309at 98.686 kb on + strand, within GFF6309at 98.686 kb on + strand, within GFF6309at 98.686 kb on + strand, within GFF6309at 98.687 kb on - strand, within GFF6309at 98.687 kb on - strand, within GFF6309at 98.687 kb on - strand, within GFF6309at 98.905 kb on + strand, within GFF6309at 98.905 kb on + strand, within GFF6309at 98.905 kb on + strand, within GFF6309at 98.905 kb on + strand, within GFF6309at 98.905 kb on + strand, within GFF6309at 98.905 kb on + strand, within GFF6309at 98.905 kb on + strand, within GFF6309at 98.905 kb on + strand, within GFF6309at 98.906 kb on - strand, within GFF6309at 98.906 kb on - strand, within GFF6309at 98.906 kb on - strand, within GFF6309at 98.906 kb on - strand, within GFF6309at 98.906 kb on - strand, within GFF6309at 98.906 kb on - strand, within GFF6309at 98.906 kb on - strand, within GFF6309at 98.906 kb on - strand, within GFF6309at 98.906 kb on - strand, within GFF6309at 98.906 kb on - strand, within GFF6309at 98.906 kb on - strand, within GFF6309at 98.906 kb on - strand, within GFF6309at 98.906 kb on - strand, within GFF6309at 99.085 kb on + strandat 99.085 kb on + strandat 99.085 kb on + strandat 99.085 kb on + strandat 99.085 kb on + strandat 99.085 kb on + strandat 99.085 kb on + strandat 99.085 kb on + strandat 99.086 kb on - strandat 99.086 kb on - strandat 99.086 kb on - strandat 99.086 kb on - strandat 99.086 kb on - strandat 99.240 kb on + strand, within GFF6310at 99.243 kb on + strand, within GFF6310at 99.243 kb on + strand, within GFF6310at 99.243 kb on + strand, within GFF6310at 99.243 kb on + strand, within GFF6310at 99.243 kb on + strand, within GFF6310at 99.244 kb on - strand, within GFF6310at 99.244 kb on - strand, within GFF6310at 99.376 kb on - strand, within GFF6310at 99.376 kb on - strand, within GFF6310at 99.477 kb on + strand, within GFF6310at 99.477 kb on + strand, within GFF6310at 99.478 kb on - strand, within GFF6310

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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97,402 + GFF6306 0.58 -0.3
97,666 + GFF6306 0.78 -0.3
97,666 + GFF6306 0.78 -1.6
97,666 + GFF6306 0.78 +0.8
97,666 + GFF6306 0.78 -0.8
97,666 + GFF6306 0.78 +0.1
97,666 + GFF6306 0.78 -0.7
97,666 + GFF6306 0.78 -0.0
97,666 + GFF6306 0.78 +0.7
97,666 + GFF6306 0.78 -2.2
97,667 - GFF6306 0.78 +0.2
97,667 - GFF6306 0.78 -0.7
97,667 - GFF6306 0.78 -1.3
97,667 - GFF6306 0.78 +0.7
97,667 - GFF6306 0.78 +1.5
97,667 - GFF6306 0.78 -0.7
97,667 - GFF6306 0.78 -1.2
97,667 - GFF6306 0.78 +0.1
97,667 - GFF6306 0.78 -0.1
97,684 + GFF6306 0.80 -1.0
97,685 - GFF6306 0.80 +2.3
97,685 - GFF6306 0.80 +0.5
97,685 - GFF6306 0.80 +0.1
97,685 - GFF6306 0.80 -1.7
97,699 + GFF6306 0.81 +0.3
97,699 + GFF6306 0.81 -0.1
97,699 + GFF6306 0.81 -0.0
97,699 + GFF6306 0.81 -0.5
97,699 + GFF6306 0.81 -2.5
97,700 - GFF6306 0.81 -4.2
97,700 - GFF6306 0.81 -0.8
97,700 - GFF6306 0.81 -0.5
97,705 + GFF6306 0.81 -0.6
97,705 + GFF6306 0.81 -0.9
97,705 + GFF6306 0.81 -1.4
97,705 + GFF6306 0.81 +1.3
97,705 + GFF6306 0.81 +1.4
97,705 + GFF6306 0.81 -0.5
97,705 + GFF6306 0.81 +1.4
97,705 + GFF6306 0.81 -1.7
97,705 + GFF6306 0.81 +0.2
97,705 + GFF6306 0.81 -1.8
97,706 - GFF6306 0.81 -1.0
97,706 - GFF6306 0.81 -0.4
97,706 - GFF6306 0.81 -0.2
97,706 - GFF6306 0.81 +1.9
97,706 - GFF6306 0.81 +1.1
97,706 - GFF6306 0.81 -0.3
97,706 - GFF6306 0.81 +2.3
97,706 - GFF6306 0.81 -0.5
97,706 - GFF6306 0.81 -0.1
97,720 + GFF6306 0.82 +0.1
97,720 + GFF6306 0.82 +0.1
97,948 + -0.2
97,949 - -1.9
98,092 + GFF6307 0.75 +0.5
98,092 + GFF6307 0.75 +2.0
98,093 - GFF6307 0.76 -1.2
98,093 - GFF6307 0.76 -0.2
98,093 - GFF6307 0.76 +0.2
98,093 - GFF6307 0.76 -1.5
98,421 + GFF6308 0.59 -0.7
98,477 + GFF6308 0.79 -0.7
98,477 + GFF6308 0.79 +2.3
98,477 + GFF6308 0.79 -0.8
98,478 - GFF6308 0.79 -2.0
98,686 + GFF6309 0.22 -1.2
98,686 + GFF6309 0.22 +0.2
98,686 + GFF6309 0.22 -0.0
98,686 + GFF6309 0.22 -0.9
98,686 + GFF6309 0.22 +1.7
98,687 - GFF6309 0.22 -0.0
98,687 - GFF6309 0.22 +1.6
98,687 - GFF6309 0.22 +0.2
98,905 + GFF6309 0.60 +0.7
98,905 + GFF6309 0.60 -1.9
98,905 + GFF6309 0.60 +1.6
98,905 + GFF6309 0.60 -1.2
98,905 + GFF6309 0.60 -0.5
98,905 + GFF6309 0.60 -2.9
98,905 + GFF6309 0.60 -4.0
98,905 + GFF6309 0.60 +1.3
98,906 - GFF6309 0.60 -2.7
98,906 - GFF6309 0.60 -0.4
98,906 - GFF6309 0.60 -1.9
98,906 - GFF6309 0.60 -0.2
98,906 - GFF6309 0.60 +1.6
98,906 - GFF6309 0.60 -0.7
98,906 - GFF6309 0.60 -0.5
98,906 - GFF6309 0.60 +0.3
98,906 - GFF6309 0.60 +0.8
98,906 - GFF6309 0.60 +0.9
98,906 - GFF6309 0.60 +1.3
98,906 - GFF6309 0.60 +0.6
98,906 - GFF6309 0.60 -0.2
99,085 + +0.5
99,085 + +0.3
99,085 + -0.3
99,085 + -2.2
99,085 + -1.0
99,085 + -1.6
99,085 + -1.6
99,085 + -0.8
99,086 - -1.8
99,086 - -2.6
99,086 - -2.0
99,086 - -0.1
99,086 - +1.3
99,240 + GFF6310 0.10 +0.5
99,243 + GFF6310 0.10 -1.5
99,243 + GFF6310 0.10 -1.0
99,243 + GFF6310 0.10 +2.6
99,243 + GFF6310 0.10 -0.6
99,243 + GFF6310 0.10 -0.3
99,244 - GFF6310 0.11 -0.3
99,244 - GFF6310 0.11 +0.0
99,376 - GFF6310 0.25 +1.7
99,376 - GFF6310 0.25 -0.5
99,477 + GFF6310 0.36 +3.9
99,477 + GFF6310 0.36 +0.3
99,478 - GFF6310 0.36 -0.6

Or see this region's nucleotide sequence