Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF626 and GFF627 overlap by 4 nucleotides GFF627 and GFF628 are separated by 107 nucleotides GFF628 and GFF629 overlap by 4 nucleotides
GFF626 - CzcABC family efflux RND transporter, transmembrane protein, at 673,454 to 676,582
GFF626
GFF627 - Secretion protein HlyD, at 676,579 to 677,751
GFF627
GFF628 - hypothetical protein, at 677,859 to 678,527
GFF628
GFF629 - hypothetical protein, at 678,524 to 679,903
GFF629
Position (kb) 676
677
678 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 675.625 kb on - strand, within GFF626 at 676.164 kb on + strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.170 kb on + strand, within GFF626 at 676.170 kb on + strand, within GFF626 at 676.171 kb on - strand, within GFF626 at 676.272 kb on + strand at 676.677 kb on - strand at 676.677 kb on - strand at 676.754 kb on + strand, within GFF627 at 676.761 kb on - strand, within GFF627 at 677.502 kb on - strand, within GFF627 at 677.787 kb on + strand at 677.834 kb on + strand at 677.834 kb on + strand at 677.835 kb on - strand at 677.835 kb on - strand at 677.835 kb on - strand at 677.835 kb on - strand at 678.151 kb on - strand, within GFF628 at 678.235 kb on + strand, within GFF628 at 678.435 kb on + strand, within GFF628 at 678.435 kb on + strand, within GFF628 at 678.435 kb on + strand, within GFF628 at 678.435 kb on + strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.504 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 675,625 - GFF626 0.69 +1.7 676,164 + GFF626 0.87 -0.9 676,165 - GFF626 0.87 -0.5 676,165 - GFF626 0.87 +0.7 676,165 - GFF626 0.87 -0.0 676,165 - GFF626 0.87 -0.9 676,170 + GFF626 0.87 -1.0 676,170 + GFF626 0.87 +2.8 676,171 - GFF626 0.87 -2.6 676,272 + -0.9 676,677 - +0.5 676,677 - +0.1 676,754 + GFF627 0.15 -1.4 676,761 - GFF627 0.16 -1.7 677,502 - GFF627 0.79 -1.7 677,787 + -0.3 677,834 + -0.7 677,834 + -0.2 677,835 - -0.8 677,835 - -0.1 677,835 - -1.8 677,835 - -0.3 678,151 - GFF628 0.44 -3.6 678,235 + GFF628 0.56 +1.1 678,435 + GFF628 0.86 -1.8 678,435 + GFF628 0.86 -0.1 678,435 + GFF628 0.86 -0.3 678,435 + GFF628 0.86 -0.4 678,436 - GFF628 0.86 +1.5 678,436 - GFF628 0.86 +0.7 678,436 - GFF628 0.86 -2.4 678,436 - GFF628 0.86 +0.7 678,436 - GFF628 0.86 -0.3 678,504 + +0.5
Or see this region's nucleotide sequence