Strain Fitness in Variovorax sp. SCN45 around GFF6239

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6238 and GFF6239 are separated by 16 nucleotidesGFF6239 and GFF6240 are separated by 11 nucleotidesGFF6240 and GFF6241 are separated by 285 nucleotides GFF6238 - hypothetical protein, at 29,813 to 31,132 GFF6238 GFF6239 - Catalase KatE-intracellular protease (EC 1.11.1.6), at 31,149 to 33,368 GFF6239 GFF6240 - hypothetical protein, at 33,380 to 33,529 GFF6240 GFF6241 - Transglutaminase-like domain, at 33,815 to 34,636 GFF6241 Position (kb) 31 32 33 34Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 30.189 kb on + strand, within GFF6238at 30.197 kb on + strand, within GFF6238at 30.197 kb on + strand, within GFF6238at 30.198 kb on - strand, within GFF6238at 30.233 kb on + strand, within GFF6238at 30.234 kb on - strand, within GFF6238at 30.234 kb on - strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.353 kb on + strand, within GFF6238at 30.353 kb on + strand, within GFF6238at 30.392 kb on + strand, within GFF6238at 30.393 kb on - strand, within GFF6238at 30.417 kb on + strand, within GFF6238at 30.417 kb on + strand, within GFF6238at 30.417 kb on + strand, within GFF6238at 30.417 kb on + strand, within GFF6238at 30.417 kb on + strand, within GFF6238at 30.417 kb on + strand, within GFF6238at 30.418 kb on - strand, within GFF6238at 30.418 kb on - strand, within GFF6238at 30.418 kb on - strand, within GFF6238at 30.418 kb on - strand, within GFF6238at 30.418 kb on - strand, within GFF6238at 30.418 kb on - strand, within GFF6238at 30.428 kb on + strand, within GFF6238at 30.428 kb on + strand, within GFF6238at 30.500 kb on + strand, within GFF6238at 30.500 kb on + strand, within GFF6238at 30.501 kb on - strand, within GFF6238at 30.848 kb on + strand, within GFF6238at 30.849 kb on - strand, within GFF6238at 30.965 kb on + strand, within GFF6238at 30.965 kb on + strand, within GFF6238at 30.966 kb on - strand, within GFF6238at 30.966 kb on - strand, within GFF6238at 30.966 kb on - strand, within GFF6238at 30.966 kb on - strand, within GFF6238at 30.966 kb on - strand, within GFF6238at 30.966 kb on - strand, within GFF6238at 30.966 kb on - strand, within GFF6238at 31.090 kb on + strandat 31.090 kb on + strandat 31.094 kb on + strandat 31.384 kb on + strand, within GFF6239at 31.384 kb on + strand, within GFF6239at 31.385 kb on - strand, within GFF6239at 31.385 kb on - strand, within GFF6239at 32.086 kb on + strand, within GFF6239at 32.221 kb on + strand, within GFF6239at 32.222 kb on - strand, within GFF6239at 32.878 kb on + strand, within GFF6239at 32.879 kb on - strand, within GFF6239at 32.879 kb on - strand, within GFF6239at 32.879 kb on - strand, within GFF6239at 32.879 kb on - strand, within GFF6239at 32.879 kb on - strand, within GFF6239at 32.879 kb on - strand, within GFF6239at 33.043 kb on + strand, within GFF6239at 33.043 kb on + strand, within GFF6239at 33.043 kb on + strand, within GFF6239at 33.044 kb on - strand, within GFF6239at 33.055 kb on + strand, within GFF6239at 33.055 kb on + strand, within GFF6239at 33.056 kb on - strand, within GFF6239at 33.056 kb on - strand, within GFF6239at 33.056 kb on - strand, within GFF6239at 33.550 kb on + strandat 33.551 kb on - strandat 33.551 kb on - strandat 33.551 kb on - strandat 33.551 kb on - strandat 33.560 kb on + strandat 33.561 kb on - strandat 33.589 kb on - strandat 33.614 kb on - strandat 33.660 kb on - strandat 33.660 kb on - strandat 33.660 kb on - strandat 33.740 kb on + strandat 33.740 kb on + strandat 33.741 kb on - strandat 33.875 kb on + strandat 33.875 kb on + strandat 33.876 kb on - strandat 33.876 kb on - strandat 33.876 kb on - strandat 34.052 kb on + strand, within GFF6241at 34.052 kb on + strand, within GFF6241at 34.052 kb on + strand, within GFF6241

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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30,189 + GFF6238 0.28 -1.5
30,197 + GFF6238 0.29 +0.1
30,197 + GFF6238 0.29 -0.4
30,198 - GFF6238 0.29 -1.2
30,233 + GFF6238 0.32 +1.7
30,234 - GFF6238 0.32 -1.7
30,234 - GFF6238 0.32 +0.0
30,344 + GFF6238 0.40 +0.2
30,344 + GFF6238 0.40 -0.9
30,344 + GFF6238 0.40 -2.1
30,344 + GFF6238 0.40 +3.3
30,344 + GFF6238 0.40 -1.7
30,344 + GFF6238 0.40 -1.3
30,344 + GFF6238 0.40 -1.2
30,344 + GFF6238 0.40 -2.3
30,344 + GFF6238 0.40 -2.2
30,344 + GFF6238 0.40 -1.6
30,344 + GFF6238 0.40 +0.9
30,344 + GFF6238 0.40 +0.5
30,345 - GFF6238 0.40 +0.7
30,345 - GFF6238 0.40 -0.9
30,345 - GFF6238 0.40 +2.3
30,345 - GFF6238 0.40 +1.4
30,345 - GFF6238 0.40 -1.1
30,345 - GFF6238 0.40 +1.1
30,345 - GFF6238 0.40 -1.3
30,345 - GFF6238 0.40 -0.5
30,353 + GFF6238 0.41 -0.5
30,353 + GFF6238 0.41 +3.0
30,392 + GFF6238 0.44 -0.7
30,393 - GFF6238 0.44 +1.2
30,417 + GFF6238 0.46 -0.4
30,417 + GFF6238 0.46 -0.3
30,417 + GFF6238 0.46 -0.6
30,417 + GFF6238 0.46 -1.6
30,417 + GFF6238 0.46 +0.6
30,417 + GFF6238 0.46 -2.3
30,418 - GFF6238 0.46 +1.2
30,418 - GFF6238 0.46 +0.7
30,418 - GFF6238 0.46 -0.0
30,418 - GFF6238 0.46 -1.0
30,418 - GFF6238 0.46 +0.1
30,418 - GFF6238 0.46 -2.1
30,428 + GFF6238 0.47 -0.3
30,428 + GFF6238 0.47 -0.3
30,500 + GFF6238 0.52 +0.1
30,500 + GFF6238 0.52 +0.9
30,501 - GFF6238 0.52 -2.4
30,848 + GFF6238 0.78 +0.1
30,849 - GFF6238 0.78 +0.4
30,965 + GFF6238 0.87 -1.4
30,965 + GFF6238 0.87 +2.5
30,966 - GFF6238 0.87 -0.0
30,966 - GFF6238 0.87 -0.9
30,966 - GFF6238 0.87 +1.9
30,966 - GFF6238 0.87 +0.6
30,966 - GFF6238 0.87 +1.1
30,966 - GFF6238 0.87 -0.0
30,966 - GFF6238 0.87 +0.4
31,090 + -0.3
31,090 + -2.2
31,094 + +0.5
31,384 + GFF6239 0.11 +2.2
31,384 + GFF6239 0.11 -1.2
31,385 - GFF6239 0.11 +0.4
31,385 - GFF6239 0.11 -1.6
32,086 + GFF6239 0.42 -1.9
32,221 + GFF6239 0.48 -0.4
32,222 - GFF6239 0.48 -1.9
32,878 + GFF6239 0.78 +0.7
32,879 - GFF6239 0.78 -2.6
32,879 - GFF6239 0.78 -0.5
32,879 - GFF6239 0.78 +2.1
32,879 - GFF6239 0.78 +0.2
32,879 - GFF6239 0.78 -1.5
32,879 - GFF6239 0.78 -1.5
33,043 + GFF6239 0.85 -0.9
33,043 + GFF6239 0.85 -0.9
33,043 + GFF6239 0.85 -0.8
33,044 - GFF6239 0.85 +0.6
33,055 + GFF6239 0.86 -1.2
33,055 + GFF6239 0.86 -0.3
33,056 - GFF6239 0.86 +1.1
33,056 - GFF6239 0.86 -3.2
33,056 - GFF6239 0.86 -1.7
33,550 + -1.7
33,551 - +0.8
33,551 - +1.2
33,551 - -3.0
33,551 - +0.1
33,560 + -1.3
33,561 - -0.7
33,589 - +0.8
33,614 - -0.0
33,660 - -0.1
33,660 - -0.3
33,660 - -2.9
33,740 + +0.3
33,740 + -0.5
33,741 - -0.7
33,875 + +0.0
33,875 + +0.1
33,876 - -1.6
33,876 - -1.7
33,876 - +0.5
34,052 + GFF6241 0.29 -1.1
34,052 + GFF6241 0.29 -2.0
34,052 + GFF6241 0.29 -1.3

Or see this region's nucleotide sequence