Strain Fitness in Variovorax sp. SCN45 around GFF6220

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6219 and GFF6220 are separated by 153 nucleotides GFF6219 - hypothetical protein, at 127,859 to 132,379 GFF6219 GFF6220 - hypothetical protein, at 132,533 to 135,472 GFF6220 Position (kb) 132 133 134 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 131.572 kb on + strand, within GFF6219at 131.594 kb on + strand, within GFF6219at 131.594 kb on + strand, within GFF6219at 131.594 kb on + strand, within GFF6219at 131.595 kb on - strand, within GFF6219at 131.595 kb on - strand, within GFF6219at 131.595 kb on - strand, within GFF6219at 131.595 kb on - strand, within GFF6219at 131.595 kb on - strand, within GFF6219at 131.840 kb on + strand, within GFF6219at 131.840 kb on + strand, within GFF6219at 131.840 kb on + strand, within GFF6219at 131.840 kb on + strand, within GFF6219at 131.840 kb on + strand, within GFF6219at 131.841 kb on - strand, within GFF6219at 131.841 kb on - strand, within GFF6219at 131.841 kb on - strand, within GFF6219at 132.086 kb on + strandat 132.086 kb on + strandat 132.333 kb on - strandat 132.333 kb on - strandat 132.333 kb on - strandat 132.432 kb on + strandat 132.824 kb on + strandat 132.824 kb on + strandat 132.824 kb on + strandat 133.703 kb on - strand, within GFF6220at 133.898 kb on + strand, within GFF6220at 134.076 kb on - strand, within GFF6220at 134.110 kb on + strand, within GFF6220at 134.110 kb on + strand, within GFF6220at 134.111 kb on - strand, within GFF6220at 134.111 kb on - strand, within GFF6220at 134.111 kb on - strand, within GFF6220at 134.111 kb on - strand, within GFF6220at 134.111 kb on - strand, within GFF6220at 134.114 kb on + strand, within GFF6220at 134.115 kb on - strand, within GFF6220at 134.115 kb on - strand, within GFF6220at 134.274 kb on - strand, within GFF6220at 134.303 kb on + strand, within GFF6220at 134.303 kb on + strand, within GFF6220at 134.304 kb on - strand, within GFF6220at 134.391 kb on - strand, within GFF6220at 134.668 kb on + strand, within GFF6220at 134.679 kb on - strand, within GFF6220at 134.679 kb on - strand, within GFF6220at 134.690 kb on + strand, within GFF6220at 134.690 kb on + strand, within GFF6220at 134.690 kb on + strand, within GFF6220at 134.690 kb on + strand, within GFF6220at 134.690 kb on + strand, within GFF6220at 134.690 kb on + strand, within GFF6220at 134.691 kb on - strand, within GFF6220at 134.691 kb on - strand, within GFF6220at 134.691 kb on - strand, within GFF6220at 134.692 kb on + strand, within GFF6220at 134.692 kb on + strand, within GFF6220at 134.692 kb on + strand, within GFF6220at 134.692 kb on + strand, within GFF6220at 134.692 kb on + strand, within GFF6220at 134.693 kb on - strand, within GFF6220at 134.701 kb on + strand, within GFF6220at 134.701 kb on + strand, within GFF6220at 134.702 kb on - strand, within GFF6220at 134.705 kb on + strand, within GFF6220at 134.706 kb on - strand, within GFF6220at 134.706 kb on - strand, within GFF6220at 134.706 kb on - strand, within GFF6220at 134.706 kb on - strand, within GFF6220at 134.819 kb on + strand, within GFF6220at 134.820 kb on - strand, within GFF6220at 134.822 kb on - strand, within GFF6220at 134.849 kb on + strand, within GFF6220at 134.849 kb on + strand, within GFF6220at 134.849 kb on + strand, within GFF6220at 134.850 kb on - strand, within GFF6220at 134.850 kb on - strand, within GFF6220at 134.850 kb on - strand, within GFF6220at 134.856 kb on - strand, within GFF6220at 134.898 kb on + strand, within GFF6220at 134.898 kb on + strand, within GFF6220at 134.898 kb on + strand, within GFF6220at 135.188 kb on + strandat 135.204 kb on - strandat 135.363 kb on - strandat 135.363 kb on - strandat 135.363 kb on - strandat 135.371 kb on + strandat 135.419 kb on + strandat 135.419 kb on + strandat 135.563 kb on + strandat 135.564 kb on - strandat 135.565 kb on + strandat 135.565 kb on + strandat 135.566 kb on - strandat 135.566 kb on - strandat 135.566 kb on - strandat 135.566 kb on - strandat 135.566 kb on - strandat 135.723 kb on - strandat 135.724 kb on + strandat 135.724 kb on + strandat 135.724 kb on + strandat 135.724 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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131,572 + GFF6219 0.82 -2.1
131,594 + GFF6219 0.83 -1.1
131,594 + GFF6219 0.83 +2.1
131,594 + GFF6219 0.83 -0.6
131,595 - GFF6219 0.83 -0.5
131,595 - GFF6219 0.83 -0.5
131,595 - GFF6219 0.83 +0.1
131,595 - GFF6219 0.83 -0.7
131,595 - GFF6219 0.83 +1.1
131,840 + GFF6219 0.88 -0.2
131,840 + GFF6219 0.88 -0.7
131,840 + GFF6219 0.88 +2.6
131,840 + GFF6219 0.88 -1.2
131,840 + GFF6219 0.88 -1.5
131,841 - GFF6219 0.88 -0.5
131,841 - GFF6219 0.88 -1.7
131,841 - GFF6219 0.88 -0.9
132,086 + -0.2
132,086 + -0.4
132,333 - +1.1
132,333 - -0.7
132,333 - -2.3
132,432 + +2.6
132,824 + +1.5
132,824 + -0.3
132,824 + -1.6
133,703 - GFF6220 0.40 -0.1
133,898 + GFF6220 0.46 -2.5
134,076 - GFF6220 0.52 +1.5
134,110 + GFF6220 0.54 +0.1
134,110 + GFF6220 0.54 -0.3
134,111 - GFF6220 0.54 -1.3
134,111 - GFF6220 0.54 -1.8
134,111 - GFF6220 0.54 -0.9
134,111 - GFF6220 0.54 -2.4
134,111 - GFF6220 0.54 -3.0
134,114 + GFF6220 0.54 -2.8
134,115 - GFF6220 0.54 +1.1
134,115 - GFF6220 0.54 +1.4
134,274 - GFF6220 0.59 -0.7
134,303 + GFF6220 0.60 -3.1
134,303 + GFF6220 0.60 -2.1
134,304 - GFF6220 0.60 +0.5
134,391 - GFF6220 0.63 -0.5
134,668 + GFF6220 0.73 -0.3
134,679 - GFF6220 0.73 -3.1
134,679 - GFF6220 0.73 +0.9
134,690 + GFF6220 0.73 -1.3
134,690 + GFF6220 0.73 +1.5
134,690 + GFF6220 0.73 +1.1
134,690 + GFF6220 0.73 +1.5
134,690 + GFF6220 0.73 -1.8
134,690 + GFF6220 0.73 +0.3
134,691 - GFF6220 0.73 +0.7
134,691 - GFF6220 0.73 +0.2
134,691 - GFF6220 0.73 -0.7
134,692 + GFF6220 0.73 +2.0
134,692 + GFF6220 0.73 +2.1
134,692 + GFF6220 0.73 -1.2
134,692 + GFF6220 0.73 +0.4
134,692 + GFF6220 0.73 -0.3
134,693 - GFF6220 0.73 +0.1
134,701 + GFF6220 0.74 +0.3
134,701 + GFF6220 0.74 +1.4
134,702 - GFF6220 0.74 -1.1
134,705 + GFF6220 0.74 -2.3
134,706 - GFF6220 0.74 +1.1
134,706 - GFF6220 0.74 +1.4
134,706 - GFF6220 0.74 -2.1
134,706 - GFF6220 0.74 -0.3
134,819 + GFF6220 0.78 -0.5
134,820 - GFF6220 0.78 +0.1
134,822 - GFF6220 0.78 +0.3
134,849 + GFF6220 0.79 -3.3
134,849 + GFF6220 0.79 +0.2
134,849 + GFF6220 0.79 -1.3
134,850 - GFF6220 0.79 +0.8
134,850 - GFF6220 0.79 -1.4
134,850 - GFF6220 0.79 -0.9
134,856 - GFF6220 0.79 -1.6
134,898 + GFF6220 0.80 -1.8
134,898 + GFF6220 0.80 -2.3
134,898 + GFF6220 0.80 +1.1
135,188 + +0.5
135,204 - -2.0
135,363 - +0.1
135,363 - -1.2
135,363 - -0.5
135,371 + -2.0
135,419 + -1.5
135,419 + -3.0
135,563 + +0.0
135,564 - +0.5
135,565 + -1.4
135,565 + -0.8
135,566 - -0.9
135,566 - +0.6
135,566 - -1.6
135,566 - +2.7
135,566 - -0.5
135,723 - +1.1
135,724 + +0.3
135,724 + +1.1
135,724 + -1.7
135,724 + +0.5

Or see this region's nucleotide sequence