Strain Fitness in Variovorax sp. SCN45 around GFF6076

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
138,553	+		GFF6075	0.63	+0.5
138,553	+		GFF6075	0.63	+1.0
138,553	+		GFF6075	0.63	+1.2
138,554	-		GFF6075	0.63	+1.5
138,554	-		GFF6075	0.63	+0.8
138,554	-		GFF6075	0.63	+1.0
138,554	-		GFF6075	0.63	-1.5
138,554	-		GFF6075	0.63	-0.3
138,554	-		GFF6075	0.63	+0.5
138,659	+		GFF6075	0.69	-2.6
138,721	+		GFF6075	0.72	-0.3
138,722	-		GFF6075	0.72	+2.4
138,722	-		GFF6075	0.72	+1.1
138,943	+		GFF6075	0.85	+1.5
138,944	-		GFF6075	0.85	-1.4
138,944	-		GFF6075	0.85	+1.0
139,452	+		GFF6076	0.30	-2.5
139,453	-		GFF6076	0.30	-0.2
139,524	+		GFF6076	0.39	-3.1
139,524	+		GFF6076	0.39	-0.7
139,524	+		GFF6076	0.39	-0.7
139,525	-		GFF6076	0.40	-0.3
139,525	-		GFF6076	0.40	-1.2
139,569	+		GFF6076	0.45	-0.5
139,569	+		GFF6076	0.45	-0.5
139,570	-		GFF6076	0.45	+0.0
139,570	-		GFF6076	0.45	-1.9
139,860	+		GFF6076	0.82	-2.8
139,860	+		GFF6076	0.82	-0.7
139,860	+		GFF6076	0.82	-2.2
139,860	+		GFF6076	0.82	-2.7
139,861	-		GFF6076	0.82	+0.1
139,861	-		GFF6076	0.82	+1.5
139,861	-		GFF6076	0.82	-0.2
139,933	-				-0.5
140,008	+				+4.0
140,009	-				+4.0
140,009	-				+1.3
140,099	+		GFF6077	0.19	+1.4
140,100	-		GFF6077	0.19	-1.9
140,100	-		GFF6077	0.19	-2.2
140,261	+		GFF6077	0.49	-0.5
140,261	+		GFF6077	0.49	-1.9
140,261	+		GFF6077	0.49	-1.4
140,261	+		GFF6077	0.49	-0.6
140,261	+		GFF6077	0.49	-0.0
140,261	+		GFF6077	0.49	+0.5
140,261	+		GFF6077	0.49	-0.0
140,261	+		GFF6077	0.49	+0.8
140,262	-		GFF6077	0.49	-1.0
140,262	-		GFF6077	0.49	+0.4
140,262	-		GFF6077	0.49	-2.2
140,262	-		GFF6077	0.49	-0.2
140,262	-		GFF6077	0.49	+0.4
140,262	-		GFF6077	0.49	-1.1
140,262	-		GFF6077	0.49	-0.7
140,262	-		GFF6077	0.49	+1.4
140,262	-		GFF6077	0.49	+0.0
140,262	-		GFF6077	0.49	-1.2
140,262	-		GFF6077	0.49	-2.9
140,262	-		GFF6077	0.49	-0.2
140,315	+		GFF6077	0.59	-1.1
140,315	+		GFF6077	0.59	-0.7
140,315	+		GFF6077	0.59	-0.7
140,316	-		GFF6077	0.59	-1.7
140,316	-		GFF6077	0.59	-1.0
140,316	-		GFF6077	0.59	+0.3
140,316	-		GFF6077	0.59	-2.4
140,396	+		GFF6077	0.74	-2.1
140,396	+		GFF6077	0.74	-0.9
140,396	+		GFF6077	0.74	+2.8
140,396	+		GFF6077	0.74	-3.1
140,396	+		GFF6077	0.74	-2.2
140,396	+		GFF6077	0.74	-2.2
140,396	+		GFF6077	0.74	+0.3
140,396	+		GFF6077	0.74	+3.0
140,396	+		GFF6077	0.74	-1.7
140,397	-		GFF6077	0.75	-0.1
140,397	-		GFF6077	0.75	-1.0
140,397	-		GFF6077	0.75	-1.0
140,397	-		GFF6077	0.75	-3.5
140,397	-		GFF6077	0.75	-0.5
140,399	+		GFF6077	0.75	-1.8
140,399	+		GFF6077	0.75	-0.2
140,399	+		GFF6077	0.75	-1.0
140,399	+		GFF6077	0.75	+1.1
140,399	+		GFF6077	0.75	-2.4
140,399	+		GFF6077	0.75	-1.3
140,399	+		GFF6077	0.75	-1.4
140,399	+		GFF6077	0.75	-0.5
140,399	+		GFF6077	0.75	-0.2
140,400	-		GFF6077	0.75	-1.7
140,400	-		GFF6077	0.75	+0.6
140,400	-		GFF6077	0.75	-0.6
140,400	-		GFF6077	0.75	-3.4
140,400	-		GFF6077	0.75	-1.1
140,400	-		GFF6077	0.75	-0.5
140,400	-		GFF6077	0.75	-1.1
140,400	-		GFF6077	0.75	-0.6
140,400	-		GFF6077	0.75	-1.6
140,400	-		GFF6077	0.75	+0.7
140,400	-		GFF6077	0.75	-2.3
140,400	-		GFF6077	0.75	-1.9
140,449	+		GFF6077	0.84	-1.0
140,450	-		GFF6077	0.84	-2.4
140,450	-		GFF6077	0.84	-2.6
140,450	-		GFF6077	0.84	-0.2
140,585	+				+0.9
140,585	+				-0.2
140,585	+				-0.6
140,585	+				-1.6
140,585	+				-1.4
140,586	-				-0.2
140,586	-				-2.1
140,586	-				-0.5
140,586	-				+0.3
140,586	-				-0.5
140,586	-				-1.1
140,675	+		GFF6078	0.13	-0.2
140,718	-		GFF6078	0.18	-2.7
140,768	+		GFF6078	0.24	+0.1
140,768	+		GFF6078	0.24	-4.2
140,768	+		GFF6078	0.24	+0.7
140,768	+		GFF6078	0.24	-2.0
140,768	+		GFF6078	0.24	+0.4
140,768	+		GFF6078	0.24	-1.1
140,768	+		GFF6078	0.24	+0.1
140,768	+		GFF6078	0.24	+0.3
140,768	+		GFF6078	0.24	-1.8
140,769	-		GFF6078	0.24	-1.9
140,769	-		GFF6078	0.24	+1.3
140,769	-		GFF6078	0.24	-0.1
140,769	-		GFF6078	0.24	+0.1
140,769	-		GFF6078	0.24	-0.0
140,769	-		GFF6078	0.24	-2.4
140,808	+		GFF6078	0.29	+0.0
140,867	+		GFF6078	0.36	-0.2