Strain Fitness in Variovorax sp. SCN45 around GFF6062

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6060 and GFF6061 overlap by 4 nucleotidesGFF6061 and GFF6062 are separated by 64 nucleotidesGFF6062 and GFF6063 are separated by 22 nucleotides GFF6060 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 121,544 to 122,608 GFF6060 GFF6061 - 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17), at 122,605 to 123,468 GFF6061 GFF6062 - Sodium-dependent phosphate transporter, at 123,533 to 125,194 GFF6062 GFF6063 - Sodium/bile acid symporter family, at 125,217 to 126,221 GFF6063 Position (kb) 123 124 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 122.689 kb on + strandat 122.689 kb on + strandat 122.690 kb on - strandat 122.690 kb on - strandat 122.713 kb on + strand, within GFF6061at 122.812 kb on + strand, within GFF6061at 122.813 kb on - strand, within GFF6061at 122.857 kb on + strand, within GFF6061at 122.857 kb on + strand, within GFF6061at 122.857 kb on + strand, within GFF6061at 122.920 kb on + strand, within GFF6061at 122.920 kb on + strand, within GFF6061at 122.920 kb on + strand, within GFF6061at 122.921 kb on - strand, within GFF6061at 122.921 kb on - strand, within GFF6061at 122.921 kb on - strand, within GFF6061at 123.417 kb on + strandat 123.518 kb on + strandat 123.543 kb on + strandat 123.543 kb on + strandat 123.543 kb on + strandat 123.543 kb on + strandat 123.544 kb on - strandat 123.544 kb on - strandat 123.544 kb on - strandat 123.544 kb on - strandat 123.544 kb on - strandat 123.544 kb on - strandat 123.544 kb on - strandat 123.583 kb on + strandat 123.598 kb on + strandat 123.615 kb on + strandat 123.616 kb on - strandat 123.822 kb on - strand, within GFF6062at 124.319 kb on + strand, within GFF6062at 124.319 kb on + strand, within GFF6062at 124.319 kb on + strand, within GFF6062at 124.319 kb on + strand, within GFF6062at 124.320 kb on - strand, within GFF6062at 124.320 kb on - strand, within GFF6062at 124.667 kb on + strand, within GFF6062at 124.667 kb on + strand, within GFF6062at 124.668 kb on - strand, within GFF6062at 124.668 kb on - strand, within GFF6062at 124.668 kb on - strand, within GFF6062at 124.682 kb on + strand, within GFF6062at 124.682 kb on + strand, within GFF6062at 124.682 kb on + strand, within GFF6062at 124.683 kb on - strand, within GFF6062at 124.683 kb on - strand, within GFF6062at 124.683 kb on - strand, within GFF6062at 124.685 kb on + strand, within GFF6062at 124.685 kb on + strand, within GFF6062at 124.685 kb on + strand, within GFF6062at 124.685 kb on + strand, within GFF6062at 124.685 kb on + strand, within GFF6062at 124.685 kb on + strand, within GFF6062at 124.686 kb on - strand, within GFF6062at 124.686 kb on - strand, within GFF6062at 124.686 kb on - strand, within GFF6062at 124.686 kb on - strand, within GFF6062at 124.686 kb on - strand, within GFF6062at 124.686 kb on - strand, within GFF6062at 125.175 kb on + strandat 125.175 kb on + strandat 125.175 kb on + strandat 125.175 kb on + strandat 125.175 kb on + strandat 125.176 kb on - strandat 125.218 kb on + strandat 125.218 kb on + strandat 125.218 kb on + strandat 125.219 kb on - strandat 125.219 kb on - strandat 125.272 kb on + strandat 125.273 kb on - strandat 125.273 kb on - strandat 125.587 kb on + strand, within GFF6063at 125.587 kb on + strand, within GFF6063at 125.587 kb on + strand, within GFF6063at 125.587 kb on + strand, within GFF6063at 125.587 kb on + strand, within GFF6063at 125.587 kb on + strand, within GFF6063at 125.587 kb on + strand, within GFF6063at 125.588 kb on - strand, within GFF6063at 125.588 kb on - strand, within GFF6063at 125.588 kb on - strand, within GFF6063at 125.588 kb on - strand, within GFF6063at 125.588 kb on - strand, within GFF6063at 125.737 kb on + strand, within GFF6063at 125.923 kb on + strand, within GFF6063at 125.923 kb on + strand, within GFF6063at 125.924 kb on - strand, within GFF6063at 125.924 kb on - strand, within GFF6063at 125.924 kb on - strand, within GFF6063at 125.924 kb on - strand, within GFF6063at 125.924 kb on - strand, within GFF6063at 125.924 kb on - strand, within GFF6063at 125.924 kb on - strand, within GFF6063

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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122,689 + -2.6
122,689 + +0.1
122,690 - -2.3
122,690 - +0.2
122,713 + GFF6061 0.12 +0.1
122,812 + GFF6061 0.24 -1.0
122,813 - GFF6061 0.24 -0.3
122,857 + GFF6061 0.29 -1.4
122,857 + GFF6061 0.29 -2.1
122,857 + GFF6061 0.29 +0.2
122,920 + GFF6061 0.36 -0.5
122,920 + GFF6061 0.36 -0.9
122,920 + GFF6061 0.36 +0.6
122,921 - GFF6061 0.37 -0.4
122,921 - GFF6061 0.37 -1.4
122,921 - GFF6061 0.37 +0.5
123,417 + +0.3
123,518 + +0.6
123,543 + +4.9
123,543 + -1.2
123,543 + -2.2
123,543 + +2.6
123,544 - -3.3
123,544 - -2.0
123,544 - +0.3
123,544 - -1.5
123,544 - -1.0
123,544 - -0.2
123,544 - -0.6
123,583 + -2.4
123,598 + +1.2
123,615 + -1.0
123,616 - -1.0
123,822 - GFF6062 0.17 -0.5
124,319 + GFF6062 0.47 +1.1
124,319 + GFF6062 0.47 -1.5
124,319 + GFF6062 0.47 -1.2
124,319 + GFF6062 0.47 +0.1
124,320 - GFF6062 0.47 -1.7
124,320 - GFF6062 0.47 +0.2
124,667 + GFF6062 0.68 +2.1
124,667 + GFF6062 0.68 -0.9
124,668 - GFF6062 0.68 -2.2
124,668 - GFF6062 0.68 +1.5
124,668 - GFF6062 0.68 -1.6
124,682 + GFF6062 0.69 +0.9
124,682 + GFF6062 0.69 +1.0
124,682 + GFF6062 0.69 +3.1
124,683 - GFF6062 0.69 -0.2
124,683 - GFF6062 0.69 -1.8
124,683 - GFF6062 0.69 +0.3
124,685 + GFF6062 0.69 -1.8
124,685 + GFF6062 0.69 -0.5
124,685 + GFF6062 0.69 -3.1
124,685 + GFF6062 0.69 +0.2
124,685 + GFF6062 0.69 -1.4
124,685 + GFF6062 0.69 +1.1
124,686 - GFF6062 0.69 -0.2
124,686 - GFF6062 0.69 -1.6
124,686 - GFF6062 0.69 -0.9
124,686 - GFF6062 0.69 +0.2
124,686 - GFF6062 0.69 +2.4
124,686 - GFF6062 0.69 +1.6
125,175 + -0.5
125,175 + +1.1
125,175 + -1.2
125,175 + -2.7
125,175 + -1.7
125,176 - -1.6
125,218 + -0.3
125,218 + +0.4
125,218 + -1.2
125,219 - +0.8
125,219 - +3.1
125,272 + -0.3
125,273 - -1.6
125,273 - +0.8
125,587 + GFF6063 0.37 -3.1
125,587 + GFF6063 0.37 +0.2
125,587 + GFF6063 0.37 -2.9
125,587 + GFF6063 0.37 -1.4
125,587 + GFF6063 0.37 -0.1
125,587 + GFF6063 0.37 +1.1
125,587 + GFF6063 0.37 -0.1
125,588 - GFF6063 0.37 +2.1
125,588 - GFF6063 0.37 +1.2
125,588 - GFF6063 0.37 -1.6
125,588 - GFF6063 0.37 +0.7
125,588 - GFF6063 0.37 +0.7
125,737 + GFF6063 0.52 -1.0
125,923 + GFF6063 0.70 -0.2
125,923 + GFF6063 0.70 -1.0
125,924 - GFF6063 0.70 +0.4
125,924 - GFF6063 0.70 +2.0
125,924 - GFF6063 0.70 -1.4
125,924 - GFF6063 0.70 +1.1
125,924 - GFF6063 0.70 -1.4
125,924 - GFF6063 0.70 -1.8
125,924 - GFF6063 0.70 -1.3

Or see this region's nucleotide sequence