Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6036 and GFF6037 are separated by 96 nucleotides GFF6037 and GFF6038 are separated by 180 nucleotides
GFF6036 - DNA translocase FtsK, at 96,754 to 99,201
GFF6036
GFF6037 - Transcriptional regulator, Crp/Fnr family, at 99,298 to 99,972
GFF6037
GFF6038 - Thioredoxin reductase (EC 1.8.1.9), at 100,153 to 101,112
GFF6038
Position (kb) 99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 98.555 kb on + strand, within GFF6036 at 98.555 kb on + strand, within GFF6036 at 98.555 kb on + strand, within GFF6036 at 98.961 kb on - strand at 98.961 kb on - strand at 98.961 kb on - strand at 98.961 kb on - strand at 98.961 kb on - strand at 99.184 kb on - strand at 99.184 kb on - strand at 99.184 kb on - strand at 99.184 kb on - strand at 99.184 kb on - strand at 99.195 kb on - strand at 99.195 kb on - strand at 99.195 kb on - strand at 99.195 kb on - strand at 99.195 kb on - strand at 99.252 kb on + strand at 99.252 kb on + strand at 99.252 kb on + strand at 99.252 kb on + strand at 99.253 kb on - strand at 99.253 kb on - strand at 99.253 kb on - strand at 99.253 kb on - strand at 99.253 kb on - strand at 99.277 kb on + strand at 99.277 kb on + strand at 99.278 kb on - strand at 99.518 kb on + strand, within GFF6037 at 99.518 kb on + strand, within GFF6037 at 99.518 kb on + strand, within GFF6037 at 99.518 kb on + strand, within GFF6037 at 99.518 kb on + strand, within GFF6037 at 99.518 kb on + strand, within GFF6037 at 99.518 kb on + strand, within GFF6037 at 99.518 kb on + strand, within GFF6037 at 99.518 kb on + strand, within GFF6037 at 99.518 kb on + strand, within GFF6037 at 99.518 kb on + strand, within GFF6037 at 99.518 kb on + strand, within GFF6037 at 99.518 kb on + strand, within GFF6037 at 99.518 kb on + strand, within GFF6037 at 99.518 kb on + strand, within GFF6037 at 99.518 kb on + strand, within GFF6037 at 99.518 kb on + strand, within GFF6037 at 99.518 kb on + strand, within GFF6037 at 99.518 kb on + strand, within GFF6037 at 99.518 kb on + strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.519 kb on - strand, within GFF6037 at 99.596 kb on + strand, within GFF6037 at 99.596 kb on + strand, within GFF6037 at 99.596 kb on + strand, within GFF6037 at 99.596 kb on + strand, within GFF6037 at 99.596 kb on + strand, within GFF6037 at 99.596 kb on + strand, within GFF6037 at 99.596 kb on + strand, within GFF6037 at 99.596 kb on + strand, within GFF6037 at 99.596 kb on + strand, within GFF6037 at 99.596 kb on + strand, within GFF6037 at 99.596 kb on + strand, within GFF6037 at 99.596 kb on + strand, within GFF6037 at 99.597 kb on - strand, within GFF6037 at 99.597 kb on - strand, within GFF6037 at 99.597 kb on - strand, within GFF6037 at 99.597 kb on - strand, within GFF6037 at 99.597 kb on - strand, within GFF6037 at 99.597 kb on - strand, within GFF6037 at 99.728 kb on + strand, within GFF6037 at 99.728 kb on + strand, within GFF6037 at 99.728 kb on + strand, within GFF6037 at 99.728 kb on + strand, within GFF6037 at 99.729 kb on - strand, within GFF6037 at 99.729 kb on - strand, within GFF6037 at 99.729 kb on - strand, within GFF6037 at 99.815 kb on + strand, within GFF6037 at 99.815 kb on + strand, within GFF6037 at 99.815 kb on + strand, within GFF6037 at 99.815 kb on + strand, within GFF6037 at 99.815 kb on + strand, within GFF6037 at 99.815 kb on + strand, within GFF6037 at 99.816 kb on - strand, within GFF6037 at 99.816 kb on - strand, within GFF6037 at 99.816 kb on - strand, within GFF6037 at 99.816 kb on - strand, within GFF6037 at 99.816 kb on - strand, within GFF6037 at 99.816 kb on - strand, within GFF6037 at 99.816 kb on - strand, within GFF6037 at 99.816 kb on - strand, within GFF6037 at 99.816 kb on - strand, within GFF6037 at 99.974 kb on + strand at 99.974 kb on + strand at 99.974 kb on + strand at 99.974 kb on + strand at 99.974 kb on + strand at 99.974 kb on + strand at 99.974 kb on + strand at 99.974 kb on + strand at 99.975 kb on - strand at 99.975 kb on - strand at 99.975 kb on - strand at 99.975 kb on - strand at 99.975 kb on - strand at 99.975 kb on - strand at 99.975 kb on - strand at 99.975 kb on - strand at 99.987 kb on + strand at 99.987 kb on + strand at 99.988 kb on - strand at 100.026 kb on + strand at 100.026 kb on + strand at 100.026 kb on + strand at 100.027 kb on - strand at 100.027 kb on - strand at 100.027 kb on - strand at 100.027 kb on - strand at 100.027 kb on - strand at 100.027 kb on - strand at 100.029 kb on + strand at 100.029 kb on + strand at 100.029 kb on + strand at 100.029 kb on + strand at 100.029 kb on + strand at 100.029 kb on + strand at 100.030 kb on - strand at 100.030 kb on - strand at 100.030 kb on - strand at 100.030 kb on - strand at 100.030 kb on - strand at 100.030 kb on - strand at 100.030 kb on - strand at 100.030 kb on - strand at 100.030 kb on - strand at 100.030 kb on - strand at 100.030 kb on - strand at 100.030 kb on - strand at 100.082 kb on + strand at 100.082 kb on + strand at 100.083 kb on - strand at 100.083 kb on - strand at 100.083 kb on - strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.090 kb on - strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.091 kb on + strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.092 kb on - strand at 100.093 kb on + strand at 100.093 kb on + strand at 100.093 kb on + strand at 100.093 kb on + strand at 100.093 kb on + strand at 100.093 kb on + strand at 100.093 kb on + strand at 100.093 kb on + strand at 100.093 kb on + strand at 100.094 kb on - strand at 100.094 kb on - strand at 100.094 kb on - strand at 100.094 kb on - strand at 100.094 kb on - strand at 100.094 kb on - strand at 100.094 kb on - strand at 100.094 kb on - strand at 100.094 kb on - strand at 100.094 kb on - strand at 100.100 kb on - strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.132 kb on + strand at 100.133 kb on - strand at 100.133 kb on - strand at 100.133 kb on - strand at 100.133 kb on - strand at 100.133 kb on - strand at 100.134 kb on + strand at 100.134 kb on + strand at 100.134 kb on + strand at 100.134 kb on + strand at 100.134 kb on + strand at 100.134 kb on + strand at 100.134 kb on + strand at 100.134 kb on + strand at 100.134 kb on + strand at 100.135 kb on - strand at 100.135 kb on - strand at 100.135 kb on - strand at 100.139 kb on + strand at 100.139 kb on + strand at 100.140 kb on - strand at 100.140 kb on - strand at 100.148 kb on + strand at 100.148 kb on + strand at 100.149 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 98,555 + GFF6036 0.74 +1.1 98,555 + GFF6036 0.74 +0.5 98,555 + GFF6036 0.74 +2.1 98,961 - +2.1 98,961 - +2.1 98,961 - +1.1 98,961 - +2.1 98,961 - +0.5 99,184 - +2.1 99,184 - +1.1 99,184 - -0.2 99,184 - -0.5 99,184 - +2.1 99,195 - +0.5 99,195 - +0.1 99,195 - +0.5 99,195 - -1.2 99,195 - -2.6 99,252 + +1.2 99,252 + +1.7 99,252 + -1.4 99,252 + -2.6 99,253 - +0.4 99,253 - +2.1 99,253 - +0.5 99,253 - -0.2 99,253 - +1.8 99,277 + +0.1 99,277 + +0.1 99,278 - -0.4 99,518 + GFF6037 0.33 +0.1 99,518 + GFF6037 0.33 -0.7 99,518 + GFF6037 0.33 +2.9 99,518 + GFF6037 0.33 +1.0 99,518 + GFF6037 0.33 +0.3 99,518 + GFF6037 0.33 +0.8 99,518 + GFF6037 0.33 -2.4 99,518 + GFF6037 0.33 +0.2 99,518 + GFF6037 0.33 +1.7 99,518 + GFF6037 0.33 +0.4 99,518 + GFF6037 0.33 +0.0 99,518 + GFF6037 0.33 +3.1 99,518 + GFF6037 0.33 +1.8 99,518 + GFF6037 0.33 +1.2 99,518 + GFF6037 0.33 +0.9 99,518 + GFF6037 0.33 -0.8 99,518 + GFF6037 0.33 -0.2 99,518 + GFF6037 0.33 -2.0 99,518 + GFF6037 0.33 -2.2 99,518 + GFF6037 0.33 +0.2 99,519 - GFF6037 0.33 +3.8 99,519 - GFF6037 0.33 +1.5 99,519 - GFF6037 0.33 +1.5 99,519 - GFF6037 0.33 +1.6 99,519 - GFF6037 0.33 +0.5 99,519 - GFF6037 0.33 -3.0 99,519 - GFF6037 0.33 +3.1 99,519 - GFF6037 0.33 +1.0 99,519 - GFF6037 0.33 +0.1 99,519 - GFF6037 0.33 +0.9 99,519 - GFF6037 0.33 -0.1 99,519 - GFF6037 0.33 -2.7 99,519 - GFF6037 0.33 +0.0 99,519 - GFF6037 0.33 +1.7 99,519 - GFF6037 0.33 +1.2 99,519 - GFF6037 0.33 +2.8 99,519 - GFF6037 0.33 -0.1 99,519 - GFF6037 0.33 -0.3 99,519 - GFF6037 0.33 -1.5 99,519 - GFF6037 0.33 +1.7 99,519 - GFF6037 0.33 -0.7 99,519 - GFF6037 0.33 +1.0 99,596 + GFF6037 0.44 +0.2 99,596 + GFF6037 0.44 +1.1 99,596 + GFF6037 0.44 -0.2 99,596 + GFF6037 0.44 -0.4 99,596 + GFF6037 0.44 +0.1 99,596 + GFF6037 0.44 +0.4 99,596 + GFF6037 0.44 +1.4 99,596 + GFF6037 0.44 -1.7 99,596 + GFF6037 0.44 -0.9 99,596 + GFF6037 0.44 +0.6 99,596 + GFF6037 0.44 -1.6 99,596 + GFF6037 0.44 -2.6 99,597 - GFF6037 0.44 +0.1 99,597 - GFF6037 0.44 -0.7 99,597 - GFF6037 0.44 -0.1 99,597 - GFF6037 0.44 -0.5 99,597 - GFF6037 0.44 -2.4 99,597 - GFF6037 0.44 -0.9 99,728 + GFF6037 0.64 -0.7 99,728 + GFF6037 0.64 +2.1 99,728 + GFF6037 0.64 +0.9 99,728 + GFF6037 0.64 +0.9 99,729 - GFF6037 0.64 +1.0 99,729 - GFF6037 0.64 +2.2 99,729 - GFF6037 0.64 +1.7 99,815 + GFF6037 0.77 +1.8 99,815 + GFF6037 0.77 -3.3 99,815 + GFF6037 0.77 -1.4 99,815 + GFF6037 0.77 +0.0 99,815 + GFF6037 0.77 +0.2 99,815 + GFF6037 0.77 -0.6 99,816 - GFF6037 0.77 +1.1 99,816 - GFF6037 0.77 +2.1 99,816 - GFF6037 0.77 -0.7 99,816 - GFF6037 0.77 +0.9 99,816 - GFF6037 0.77 -2.7 99,816 - GFF6037 0.77 +1.0 99,816 - GFF6037 0.77 +0.1 99,816 - GFF6037 0.77 -0.5 99,816 - GFF6037 0.77 -1.3 99,974 + +0.9 99,974 + -1.2 99,974 + +1.2 99,974 + -0.1 99,974 + +0.9 99,974 + -1.7 99,974 + -2.0 99,974 + +1.6 99,975 - -1.9 99,975 - -1.2 99,975 - -0.7 99,975 - -2.2 99,975 - +0.5 99,975 - -2.1 99,975 - +1.5 99,975 - -1.1 99,987 + -2.2 99,987 + -1.5 99,988 - -1.3 100,026 + -0.5 100,026 + +0.8 100,026 + +0.9 100,027 - -0.4 100,027 - -1.6 100,027 - -0.2 100,027 - -1.4 100,027 - -0.4 100,027 - -0.7 100,029 + -0.2 100,029 + -1.2 100,029 + +1.3 100,029 + +1.2 100,029 + +0.6 100,029 + +2.0 100,030 - +1.3 100,030 - -0.6 100,030 - -0.5 100,030 - +0.3 100,030 - +1.6 100,030 - +0.8 100,030 - -0.2 100,030 - -0.9 100,030 - -1.8 100,030 - -1.6 100,030 - +1.0 100,030 - -0.9 100,082 + +1.7 100,082 + -2.6 100,083 - +0.3 100,083 - -0.4 100,083 - -0.9 100,089 + +2.7 100,089 + +0.0 100,089 + +1.9 100,089 + -2.6 100,089 + -2.7 100,089 + +0.5 100,089 + +0.1 100,089 + +0.1 100,089 + +0.6 100,089 + -0.6 100,089 + +1.1 100,089 + +0.2 100,089 + -2.0 100,089 + -0.0 100,089 + +0.4 100,089 + +0.3 100,089 + -0.2 100,089 + +1.6 100,089 + +0.8 100,089 + -0.2 100,089 + -0.5 100,089 + +1.2 100,089 + +1.4 100,089 + -1.3 100,089 + -1.1 100,089 + +1.5 100,089 + -0.5 100,089 + -2.7 100,089 + +0.1 100,089 + +1.2 100,089 + -2.6 100,089 + +3.3 100,089 + -1.1 100,089 + +0.4 100,089 + -1.2 100,089 + -1.4 100,089 + -3.2 100,089 + +1.4 100,089 + -0.5 100,089 + +1.4 100,090 - -0.8 100,090 - -1.2 100,090 - -1.7 100,090 - +1.1 100,090 - +0.8 100,090 - +3.5 100,090 - -0.2 100,090 - -0.1 100,090 - +0.3 100,090 - +0.3 100,090 - -0.7 100,090 - -0.4 100,090 - -0.2 100,090 - +5.1 100,090 - -1.1 100,090 - +0.1 100,090 - +0.5 100,090 - +0.8 100,090 - -0.9 100,090 - +0.8 100,090 - +0.1 100,090 - -1.6 100,090 - +2.8 100,090 - +0.7 100,090 - +2.2 100,090 - +1.2 100,090 - -0.2 100,090 - -0.4 100,090 - -1.7 100,090 - -1.8 100,090 - -1.1 100,090 - +0.2 100,090 - -3.1 100,090 - +0.5 100,090 - -0.5 100,091 + -1.9 100,091 + +2.8 100,091 + +0.4 100,091 + -0.9 100,091 + +1.4 100,091 + +1.5 100,091 + +3.0 100,091 + +1.8 100,091 + +0.8 100,091 + -2.2 100,091 + -0.9 100,091 + +0.1 100,091 + +2.4 100,091 + -0.5 100,091 + -2.1 100,091 + -0.6 100,091 + +1.8 100,091 + -0.9 100,091 + +1.8 100,091 + -1.2 100,091 + -0.2 100,091 + -1.7 100,091 + +1.5 100,091 + +0.3 100,091 + +0.9 100,091 + +0.3 100,091 + -0.5 100,091 + +1.2 100,091 + -2.7 100,091 + +0.2 100,091 + -1.6 100,091 + +2.1 100,091 + +0.6 100,092 - +0.6 100,092 - -2.6 100,092 - -0.5 100,092 - +1.4 100,092 - +0.4 100,092 - -2.1 100,092 - -1.1 100,092 - -2.5 100,092 - -2.2 100,092 - -1.2 100,092 - -0.4 100,092 - -0.2 100,092 - -1.6 100,092 - +0.1 100,092 - +0.1 100,092 - +2.1 100,092 - -2.2 100,092 - +1.0 100,092 - +0.1 100,092 - -0.1 100,092 - -1.8 100,092 - -0.9 100,092 - -3.2 100,092 - +0.5 100,092 - +2.1 100,092 - -1.4 100,092 - -2.1 100,093 + -2.2 100,093 + +2.5 100,093 + -3.6 100,093 + +2.1 100,093 + +0.2 100,093 + -0.2 100,093 + +1.8 100,093 + +1.2 100,093 + -1.5 100,094 - +0.5 100,094 - -0.5 100,094 - -0.9 100,094 - -2.0 100,094 - +0.0 100,094 - -1.6 100,094 - +1.1 100,094 - +0.1 100,094 - -2.5 100,094 - +1.1 100,100 - -1.2 100,132 + +6.2 100,132 + +1.6 100,132 + +0.1 100,132 + +2.1 100,132 + -1.4 100,132 + -2.2 100,132 + +0.6 100,132 + +0.3 100,132 + -1.7 100,132 + +3.0 100,132 + -0.7 100,132 + -0.5 100,132 + +1.7 100,132 + -1.2 100,132 + +2.6 100,132 + +0.8 100,132 + +0.4 100,132 + +1.3 100,132 + -0.7 100,132 + +1.4 100,132 + +0.5 100,133 - +2.1 100,133 - -0.2 100,133 - +2.1 100,133 - +2.1 100,133 - +1.1 100,134 + -1.0 100,134 + +0.6 100,134 + +0.1 100,134 + +1.2 100,134 + +1.8 100,134 + -1.4 100,134 + -1.2 100,134 + -0.5 100,134 + -0.9 100,135 - -0.9 100,135 - -1.5 100,135 - -0.9 100,139 + -2.7 100,139 + +0.5 100,140 - +2.1 100,140 - +1.1 100,148 + -0.9 100,148 + -1.5 100,149 - -0.5
Or see this region's nucleotide sequence