Strain Fitness in Variovorax sp. SCN45 around GFF5993

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
49,137	+		GFF5992	0.22	+0.4
49,137	+		GFF5992	0.22	-2.1
49,138	-		GFF5992	0.22	+1.1
49,357	-		GFF5992	0.45	+0.3
49,357	-		GFF5992	0.45	+0.3
49,396	-		GFF5992	0.49	+2.4
49,491	+		GFF5992	0.59	+0.7
49,491	+		GFF5992	0.59	-1.1
49,491	+		GFF5992	0.59	-1.7
49,491	+		GFF5992	0.59	-0.2
49,492	-		GFF5992	0.59	-0.4
49,492	-		GFF5992	0.59	-0.7
49,492	-		GFF5992	0.59	-0.2
49,492	-		GFF5992	0.59	-1.4
49,558	-		GFF5992	0.65	+0.9
49,819	-				-1.6
49,908	+				-1.7
50,132	+		GFF5993	0.15	-1.9
50,132	+		GFF5993	0.15	-0.4
50,132	+		GFF5993	0.15	-1.2
50,132	+		GFF5993	0.15	-2.2
50,132	+		GFF5993	0.15	-0.9
50,133	-		GFF5993	0.15	-0.1
50,133	-		GFF5993	0.15	-0.8
50,133	-		GFF5993	0.15	+0.5
50,133	-		GFF5993	0.15	-1.2
50,687	+		GFF5993	0.56	+0.3
50,688	-		GFF5993	0.56	-0.4
50,688	-		GFF5993	0.56	-0.9
50,688	-		GFF5993	0.56	+1.1
50,688	-		GFF5993	0.56	-2.4
50,688	-		GFF5993	0.56	+0.1
50,693	+		GFF5993	0.57	+1.1
50,693	+		GFF5993	0.57	+0.3
50,693	+		GFF5993	0.57	+0.9
50,724	-		GFF5993	0.59	+0.3
50,805	-		GFF5993	0.65	-0.7
50,805	-		GFF5993	0.65	-0.4
50,840	+		GFF5993	0.68	-0.6
50,840	+		GFF5993	0.68	-0.0
50,940	-		GFF5993	0.75	+0.5
51,110	+		GFF5993	0.88	-0.3
51,111	-		GFF5993	0.88	-1.6
51,140	+				-0.5
51,141	-				+0.1
51,279	+				+1.4
51,279	+				-0.2
51,403	+				-0.5
51,403	+				+0.5
51,404	-				+2.1
51,435	-				+1.9
51,493	+				-2.2
51,493	+				+0.9
51,493	+				+0.5
51,494	-				-1.5
51,494	-				-0.2
51,494	-				-1.8
51,494	-				-1.6
51,706	+		GFF5994	0.16	-1.7
51,715	+		GFF5994	0.16	+1.0
51,715	+		GFF5994	0.16	+0.9
51,716	-		GFF5994	0.16	-0.8
51,749	-		GFF5994	0.17	-0.7
51,784	+		GFF5994	0.19	+0.9
51,795	-		GFF5994	0.19	-1.7
51,795	-		GFF5994	0.19	-0.2
51,875	+		GFF5994	0.22	-0.5
51,875	+		GFF5994	0.22	-1.1
52,036	+		GFF5994	0.28	-3.0
52,036	+		GFF5994	0.28	+1.4
52,036	+		GFF5994	0.28	+1.1
52,037	-		GFF5994	0.28	+1.5
52,037	-		GFF5994	0.28	-0.5
52,037	-		GFF5994	0.28	-0.2
52,120	+		GFF5994	0.31	+0.9
52,121	-		GFF5994	0.31	+3.9
52,183	+		GFF5994	0.33	-0.6
52,184	-		GFF5994	0.33	-0.0
52,184	-		GFF5994	0.33	+0.5
52,249	+		GFF5994	0.36	-0.5
52,249	+		GFF5994	0.36	-0.7
52,250	-		GFF5994	0.36	-1.2