Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5983 and GFF5984 are separated by 125 nucleotides GFF5984 and GFF5985 are separated by 223 nucleotides
GFF5983 - Transcriptional regulator, LysR family, at 36,461 to 37,348
GFF5983
GFF5984 - L-lactate dehydrogenase, at 37,474 to 38,631
GFF5984
GFF5985 - dicarboxylic acid transporter PcaT, at 38,855 to 40,090
GFF5985
Position (kb) 37
38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 36.812 kb on + strand, within GFF5983 at 36.813 kb on - strand, within GFF5983 at 36.813 kb on - strand, within GFF5983 at 36.971 kb on + strand, within GFF5983 at 36.972 kb on - strand, within GFF5983 at 37.421 kb on + strand at 37.421 kb on + strand at 37.422 kb on - strand at 37.422 kb on - strand at 37.549 kb on + strand at 37.549 kb on + strand at 37.550 kb on - strand at 37.873 kb on + strand, within GFF5984 at 37.873 kb on + strand, within GFF5984 at 37.873 kb on + strand, within GFF5984 at 37.873 kb on + strand, within GFF5984 at 37.873 kb on + strand, within GFF5984 at 37.873 kb on + strand, within GFF5984 at 37.874 kb on - strand, within GFF5984 at 37.874 kb on - strand, within GFF5984 at 37.874 kb on - strand, within GFF5984 at 38.489 kb on - strand, within GFF5984 at 38.504 kb on - strand, within GFF5984 at 38.816 kb on + strand at 38.816 kb on + strand at 38.816 kb on + strand at 38.897 kb on + strand at 38.898 kb on - strand at 38.898 kb on - strand at 38.903 kb on + strand at 38.903 kb on + strand at 38.903 kb on + strand at 38.903 kb on + strand at 38.903 kb on + strand at 38.904 kb on - strand at 38.904 kb on - strand at 38.904 kb on - strand at 38.904 kb on - strand at 38.922 kb on - strand at 39.128 kb on + strand, within GFF5985 at 39.128 kb on + strand, within GFF5985 at 39.128 kb on + strand, within GFF5985 at 39.129 kb on - strand, within GFF5985 at 39.129 kb on - strand, within GFF5985 at 39.206 kb on + strand, within GFF5985 at 39.224 kb on + strand, within GFF5985 at 39.224 kb on + strand, within GFF5985 at 39.224 kb on + strand, within GFF5985 at 39.224 kb on + strand, within GFF5985 at 39.225 kb on - strand, within GFF5985 at 39.225 kb on - strand, within GFF5985 at 39.578 kb on + strand, within GFF5985 at 39.578 kb on + strand, within GFF5985 at 39.590 kb on + strand, within GFF5985
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 36,812 + GFF5983 0.40 -2.3 36,813 - GFF5983 0.40 -2.1 36,813 - GFF5983 0.40 +0.1 36,971 + GFF5983 0.57 +0.1 36,972 - GFF5983 0.58 -1.9 37,421 + -0.1 37,421 + -1.1 37,422 - +0.3 37,422 - +2.1 37,549 + -1.5 37,549 + -0.2 37,550 - +1.6 37,873 + GFF5984 0.34 +0.9 37,873 + GFF5984 0.34 -2.1 37,873 + GFF5984 0.34 -1.7 37,873 + GFF5984 0.34 -1.5 37,873 + GFF5984 0.34 +0.9 37,873 + GFF5984 0.34 -1.8 37,874 - GFF5984 0.35 -2.6 37,874 - GFF5984 0.35 +1.3 37,874 - GFF5984 0.35 +1.2 38,489 - GFF5984 0.88 -2.2 38,504 - GFF5984 0.89 -3.1 38,816 + -2.4 38,816 + +0.5 38,816 + -0.2 38,897 + -1.4 38,898 - -1.4 38,898 - +1.9 38,903 + -2.2 38,903 + -0.7 38,903 + -1.3 38,903 + +1.2 38,903 + -0.2 38,904 - -3.1 38,904 - +1.7 38,904 - +0.4 38,904 - +1.9 38,922 - -0.9 39,128 + GFF5985 0.22 -1.4 39,128 + GFF5985 0.22 +1.0 39,128 + GFF5985 0.22 -2.9 39,129 - GFF5985 0.22 -2.8 39,129 - GFF5985 0.22 +0.3 39,206 + GFF5985 0.28 -3.1 39,224 + GFF5985 0.30 -0.3 39,224 + GFF5985 0.30 -1.3 39,224 + GFF5985 0.30 +0.4 39,224 + GFF5985 0.30 -2.3 39,225 - GFF5985 0.30 -0.4 39,225 - GFF5985 0.30 -3.1 39,578 + GFF5985 0.58 +1.9 39,578 + GFF5985 0.58 +2.1 39,590 + GFF5985 0.59 -0.2
Or see this region's nucleotide sequence