Strain Fitness in Variovorax sp. SCN45 around GFF5961

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
15,717	-		GFF5959	0.75	-0.7
15,717	-		GFF5959	0.75	-0.5
16,104	+				-0.2
16,271	-		GFF5960	0.27	-4.9
16,271	-		GFF5960	0.27	+1.0
16,392	+		GFF5960	0.47	-1.6
16,392	+		GFF5960	0.47	+1.1
16,462	+		GFF5960	0.58	+0.2
16,463	-		GFF5960	0.58	-1.8
16,803	+		GFF5961	0.18	-1.2
16,803	+		GFF5961	0.18	+0.9
16,803	+		GFF5961	0.18	-3.1
16,803	+		GFF5961	0.18	-0.6
16,804	-		GFF5961	0.18	-1.6
16,804	-		GFF5961	0.18	-1.7
16,804	-		GFF5961	0.18	-2.9
16,804	-		GFF5961	0.18	-3.1
17,113	-		GFF5961	0.80	-1.8
17,270	+				-3.1
17,271	-				-3.1
17,271	-				+0.1
17,561	-				-0.6
17,561	-				-2.3
17,622	+				+0.7
17,622	+				+1.9
17,622	+				+1.8
17,622	+				+2.1
17,622	+				-0.9
17,622	+				-2.0
17,622	+				+0.1
17,622	+				-1.4
17,623	-				+2.6
17,623	-				-0.6
17,623	-				+0.5
17,817	+		GFF5963	0.51	+0.2
17,817	+		GFF5963	0.51	-0.5
17,817	+		GFF5963	0.51	-0.7
17,817	+		GFF5963	0.51	-0.4
17,817	+		GFF5963	0.51	-0.3
17,818	-		GFF5963	0.52	+0.9
17,818	-		GFF5963	0.52	+0.3
17,818	-		GFF5963	0.52	+0.9
17,818	-		GFF5963	0.52	-0.1
17,818	-		GFF5963	0.52	+0.5
17,818	-		GFF5963	0.52	-2.3
18,151	+		GFF5964	0.14	-1.8
18,151	+		GFF5964	0.14	+1.4
18,151	+		GFF5964	0.14	+0.5
18,151	+		GFF5964	0.14	-1.0
18,151	+		GFF5964	0.14	-2.5
18,151	+		GFF5964	0.14	-2.2