Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5825 and GFF5826 are separated by 10 nucleotides GFF5826 and GFF5827 overlap by 4 nucleotides GFF5827 and GFF5828 overlap by 4 nucleotides GFF5828 and GFF5829 are separated by 12 nucleotides
GFF5825 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 1,559 to 2,266
GFF5825
GFF5826 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 2,277 to 2,984
GFF5826
GFF5827 - FIG00452956: hypothetical protein, at 2,981 to 4,054
GFF5827
GFF5828 - Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1), at 4,051 to 4,920
GFF5828
GFF5829 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 4,933 to 6,201
GFF5829
Position (kb) 2
3
4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1.994 kb on + strand, within GFF5825 at 1.994 kb on + strand, within GFF5825 at 2.294 kb on - strand at 2.294 kb on - strand at 3.120 kb on + strand, within GFF5827 at 3.121 kb on - strand, within GFF5827 at 3.121 kb on - strand, within GFF5827 at 3.201 kb on + strand, within GFF5827 at 3.201 kb on + strand, within GFF5827 at 3.201 kb on + strand, within GFF5827 at 3.202 kb on - strand, within GFF5827 at 3.202 kb on - strand, within GFF5827 at 3.202 kb on - strand, within GFF5827 at 3.202 kb on - strand, within GFF5827 at 3.202 kb on - strand, within GFF5827 at 3.202 kb on - strand, within GFF5827 at 3.489 kb on + strand, within GFF5827 at 3.490 kb on - strand, within GFF5827 at 3.490 kb on - strand, within GFF5827 at 3.490 kb on - strand, within GFF5827 at 3.645 kb on + strand, within GFF5827 at 3.645 kb on + strand, within GFF5827 at 3.645 kb on + strand, within GFF5827 at 3.646 kb on - strand, within GFF5827 at 3.646 kb on - strand, within GFF5827 at 3.795 kb on + strand, within GFF5827 at 3.795 kb on + strand, within GFF5827 at 4.306 kb on + strand, within GFF5828 at 4.306 kb on + strand, within GFF5828 at 4.307 kb on - strand, within GFF5828 at 4.586 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.778 kb on + strand, within GFF5828 at 4.835 kb on + strand at 4.835 kb on + strand at 4.869 kb on - strand at 4.910 kb on + strand at 4.934 kb on + strand at 4.935 kb on - strand at 4.935 kb on - strand at 4.935 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 1,994 + GFF5825 0.61 +1.9 1,994 + GFF5825 0.61 +0.8 2,294 - +0.4 2,294 - +0.2 3,120 + GFF5827 0.13 +0.9 3,121 - GFF5827 0.13 -0.2 3,121 - GFF5827 0.13 -2.1 3,201 + GFF5827 0.20 -1.3 3,201 + GFF5827 0.20 -2.6 3,201 + GFF5827 0.20 +0.9 3,202 - GFF5827 0.21 -0.0 3,202 - GFF5827 0.21 -0.7 3,202 - GFF5827 0.21 -1.0 3,202 - GFF5827 0.21 +1.4 3,202 - GFF5827 0.21 -2.7 3,202 - GFF5827 0.21 -1.1 3,489 + GFF5827 0.47 +3.1 3,490 - GFF5827 0.47 -0.6 3,490 - GFF5827 0.47 +1.5 3,490 - GFF5827 0.47 -1.2 3,645 + GFF5827 0.62 -0.6 3,645 + GFF5827 0.62 -1.7 3,645 + GFF5827 0.62 +0.1 3,646 - GFF5827 0.62 -0.1 3,646 - GFF5827 0.62 +1.0 3,795 + GFF5827 0.76 +1.2 3,795 + GFF5827 0.76 -0.8 4,306 + GFF5828 0.29 -1.7 4,306 + GFF5828 0.29 +0.2 4,307 - GFF5828 0.29 +2.9 4,586 + GFF5828 0.61 -1.8 4,778 + GFF5828 0.84 -0.5 4,778 + GFF5828 0.84 -0.5 4,778 + GFF5828 0.84 -3.7 4,778 + GFF5828 0.84 -1.8 4,835 + +0.0 4,835 + +1.4 4,869 - -1.0 4,910 + +1.3 4,934 + -0.1 4,935 - +2.6 4,935 - +0.4 4,935 - -0.5
Or see this region's nucleotide sequence