Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5782 and GFF5783 are separated by 1 nucleotides GFF5783 and GFF5784 are separated by 28 nucleotides GFF5784 and GFF5785 are separated by 177 nucleotides
GFF5782 - BUG/TctC family periplasmic protein, at 157,038 to 158,072
GFF5782
GFF5783 - hypothetical protein, at 158,074 to 159,402
GFF5783
GFF5784 - hypothetical protein, at 159,431 to 159,832
GFF5784
GFF5785 - FIG00931285: hypothetical protein, at 160,010 to 161,425
GFF5785
Position (kb) 158
159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 157.419 kb on + strand, within GFF5782 at 157.419 kb on + strand, within GFF5782 at 157.419 kb on + strand, within GFF5782 at 157.420 kb on - strand, within GFF5782 at 157.420 kb on - strand, within GFF5782 at 157.644 kb on + strand, within GFF5782 at 157.644 kb on + strand, within GFF5782 at 157.644 kb on + strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 158.004 kb on + strand at 158.005 kb on - strand at 158.005 kb on - strand at 158.110 kb on - strand at 158.110 kb on - strand at 158.554 kb on + strand, within GFF5783 at 158.554 kb on + strand, within GFF5783 at 158.554 kb on + strand, within GFF5783 at 158.555 kb on - strand, within GFF5783 at 158.555 kb on - strand, within GFF5783 at 158.555 kb on - strand, within GFF5783 at 158.555 kb on - strand, within GFF5783 at 159.118 kb on + strand, within GFF5783 at 159.118 kb on + strand, within GFF5783 at 159.119 kb on - strand, within GFF5783 at 159.119 kb on - strand, within GFF5783 at 159.119 kb on - strand, within GFF5783 at 159.119 kb on - strand, within GFF5783 at 159.119 kb on - strand, within GFF5783 at 159.119 kb on - strand, within GFF5783 at 159.119 kb on - strand, within GFF5783 at 159.400 kb on + strand at 159.401 kb on - strand at 159.401 kb on - strand at 159.907 kb on + strand at 159.907 kb on + strand at 159.907 kb on + strand at 159.937 kb on + strand at 160.009 kb on + strand at 160.010 kb on - strand at 160.124 kb on + strand at 160.124 kb on + strand at 160.125 kb on - strand at 160.175 kb on + strand, within GFF5785 at 160.175 kb on + strand, within GFF5785 at 160.175 kb on + strand, within GFF5785 at 160.175 kb on + strand, within GFF5785 at 160.175 kb on + strand, within GFF5785 at 160.175 kb on + strand, within GFF5785 at 160.175 kb on + strand, within GFF5785 at 160.175 kb on + strand, within GFF5785 at 160.175 kb on + strand, within GFF5785 at 160.175 kb on + strand, within GFF5785 at 160.175 kb on + strand, within GFF5785 at 160.176 kb on - strand, within GFF5785 at 160.176 kb on - strand, within GFF5785 at 160.176 kb on - strand, within GFF5785 at 160.176 kb on - strand, within GFF5785 at 160.176 kb on - strand, within GFF5785 at 160.176 kb on - strand, within GFF5785 at 160.176 kb on - strand, within GFF5785 at 160.176 kb on - strand, within GFF5785 at 160.256 kb on + strand, within GFF5785 at 160.256 kb on + strand, within GFF5785 at 160.256 kb on + strand, within GFF5785 at 160.257 kb on - strand, within GFF5785 at 160.268 kb on + strand, within GFF5785 at 160.313 kb on + strand, within GFF5785
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 157,419 + GFF5782 0.37 -0.6 157,419 + GFF5782 0.37 +1.7 157,419 + GFF5782 0.37 -0.3 157,420 - GFF5782 0.37 +0.1 157,420 - GFF5782 0.37 +0.9 157,644 + GFF5782 0.59 -0.3 157,644 + GFF5782 0.59 -2.3 157,644 + GFF5782 0.59 -2.7 157,645 - GFF5782 0.59 +0.6 157,645 - GFF5782 0.59 -0.2 157,645 - GFF5782 0.59 +0.5 157,645 - GFF5782 0.59 +0.9 157,645 - GFF5782 0.59 -0.0 157,645 - GFF5782 0.59 -1.2 157,645 - GFF5782 0.59 +1.5 157,645 - GFF5782 0.59 -0.9 157,645 - GFF5782 0.59 -2.7 158,004 + -0.5 158,005 - -1.4 158,005 - +0.4 158,110 - -0.5 158,110 - -1.5 158,554 + GFF5783 0.36 -3.5 158,554 + GFF5783 0.36 +0.3 158,554 + GFF5783 0.36 +2.3 158,555 - GFF5783 0.36 +1.7 158,555 - GFF5783 0.36 +1.0 158,555 - GFF5783 0.36 +0.8 158,555 - GFF5783 0.36 -2.9 159,118 + GFF5783 0.79 -0.5 159,118 + GFF5783 0.79 -1.3 159,119 - GFF5783 0.79 -2.0 159,119 - GFF5783 0.79 -2.0 159,119 - GFF5783 0.79 -0.2 159,119 - GFF5783 0.79 +2.8 159,119 - GFF5783 0.79 +2.3 159,119 - GFF5783 0.79 -2.4 159,119 - GFF5783 0.79 +0.7 159,400 + -1.8 159,401 - -2.3 159,401 - +2.5 159,907 + -0.1 159,907 + +0.2 159,907 + -2.9 159,937 + -1.1 160,009 + -2.8 160,010 - -1.5 160,124 + -0.5 160,124 + +1.0 160,125 - -1.2 160,175 + GFF5785 0.12 -0.2 160,175 + GFF5785 0.12 -3.0 160,175 + GFF5785 0.12 -1.8 160,175 + GFF5785 0.12 -2.4 160,175 + GFF5785 0.12 +0.9 160,175 + GFF5785 0.12 -0.4 160,175 + GFF5785 0.12 -0.9 160,175 + GFF5785 0.12 -1.2 160,175 + GFF5785 0.12 +0.9 160,175 + GFF5785 0.12 +1.3 160,175 + GFF5785 0.12 -1.3 160,176 - GFF5785 0.12 -0.9 160,176 - GFF5785 0.12 -0.1 160,176 - GFF5785 0.12 +0.9 160,176 - GFF5785 0.12 +0.4 160,176 - GFF5785 0.12 -1.7 160,176 - GFF5785 0.12 -1.1 160,176 - GFF5785 0.12 -0.9 160,176 - GFF5785 0.12 +0.9 160,256 + GFF5785 0.17 +0.9 160,256 + GFF5785 0.17 -1.1 160,256 + GFF5785 0.17 -2.2 160,257 - GFF5785 0.17 +0.2 160,268 + GFF5785 0.18 -1.5 160,313 + GFF5785 0.21 -0.2
Or see this region's nucleotide sequence