Strain Fitness in Variovorax sp. SCN45 around GFF5778

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
151,809	+				-1.1
151,810	-				+0.1
151,810	-				+0.1
151,839	+				+2.1
151,839	+				+1.3
151,839	+				-2.8
151,839	+				-3.2
151,840	-				-2.7
151,840	-				-1.8
151,840	-				+0.1
151,846	+				-1.4
152,004	+		GFF5777	0.26	-1.0
152,005	-		GFF5777	0.26	+1.3
152,005	-		GFF5777	0.26	+1.7
152,037	+		GFF5777	0.30	-1.2
152,038	-		GFF5777	0.30	-1.2
152,038	-		GFF5777	0.30	-0.2
152,038	-		GFF5777	0.30	-1.7
152,038	-		GFF5777	0.30	-0.2
152,101	-		GFF5777	0.38	+0.5
152,101	-		GFF5777	0.38	-0.9
152,667	+				-1.7
152,667	+				+0.9
152,668	-				+1.6
152,668	-				-2.7
152,668	-				-1.8
152,668	-				-0.3
152,668	-				-0.1
152,770	-				-0.4
152,770	-				-0.9
152,805	+				-0.3
152,805	+				+1.8
152,806	-				-2.4
152,806	-				+0.2
152,806	-				-2.0
152,806	-				-2.2
152,955	+		GFF5778	0.24	-0.6
152,956	-		GFF5778	0.24	-2.7
152,956	-		GFF5778	0.24	-1.2
153,785	+				+0.9
153,785	+				-1.9
153,785	+				-0.9
153,786	-				-0.6
153,786	-				-0.5
153,786	-				-1.1
153,786	-				-0.8
153,832	+		GFF5779	0.13	+1.1
153,832	+		GFF5779	0.13	-0.5
153,833	-		GFF5779	0.13	+1.5
153,833	-		GFF5779	0.13	+1.1
154,039	+		GFF5779	0.32	-2.2
154,039	+		GFF5779	0.32	-0.2
154,039	+		GFF5779	0.32	-1.7
154,040	-		GFF5779	0.32	+0.2
154,040	-		GFF5779	0.32	-0.2
154,393	+		GFF5779	0.66	+1.2
154,653	+				-0.5
154,654	-				+3.9