Strain Fitness in Variovorax sp. SCN45 around GFF5761

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5759 and GFF5760 overlap by 4 nucleotidesGFF5760 and GFF5761 are separated by 66 nucleotidesGFF5761 and GFF5762 are separated by 36 nucleotides GFF5759 - Flagellar transcriptional activator FlhD, at 131,617 to 132,021 GFF5759 GFF5760 - Flagellar transcriptional activator FlhC, at 132,018 to 132,605 GFF5760 GFF5761 - Flagellar motor rotation protein MotA, at 132,672 to 133,532 GFF5761 GFF5762 - Flagellar motor rotation protein MotB, at 133,569 to 134,534 GFF5762 Position (kb) 132 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 131.703 kb on + strand, within GFF5759at 131.703 kb on + strand, within GFF5759at 131.713 kb on + strand, within GFF5759at 131.713 kb on + strand, within GFF5759at 131.713 kb on + strand, within GFF5759at 131.713 kb on + strand, within GFF5759at 131.714 kb on - strand, within GFF5759at 131.714 kb on - strand, within GFF5759at 131.714 kb on - strand, within GFF5759at 131.714 kb on - strand, within GFF5759at 131.714 kb on - strand, within GFF5759at 131.714 kb on - strand, within GFF5759at 131.715 kb on + strand, within GFF5759at 131.715 kb on + strand, within GFF5759at 131.715 kb on + strand, within GFF5759at 131.715 kb on + strand, within GFF5759at 131.715 kb on + strand, within GFF5759at 131.715 kb on + strand, within GFF5759at 131.715 kb on + strand, within GFF5759at 131.715 kb on + strand, within GFF5759at 131.716 kb on - strand, within GFF5759at 131.716 kb on - strand, within GFF5759at 131.716 kb on - strand, within GFF5759at 131.716 kb on - strand, within GFF5759at 131.716 kb on - strand, within GFF5759at 131.716 kb on - strand, within GFF5759at 131.716 kb on - strand, within GFF5759at 131.716 kb on - strand, within GFF5759at 131.716 kb on - strand, within GFF5759at 131.716 kb on - strand, within GFF5759at 131.716 kb on - strand, within GFF5759at 131.716 kb on - strand, within GFF5759at 131.716 kb on - strand, within GFF5759at 132.147 kb on + strand, within GFF5760at 132.147 kb on + strand, within GFF5760at 132.147 kb on + strand, within GFF5760at 132.147 kb on + strand, within GFF5760at 132.147 kb on + strand, within GFF5760at 132.147 kb on + strand, within GFF5760at 132.148 kb on - strand, within GFF5760at 132.148 kb on - strand, within GFF5760at 132.148 kb on - strand, within GFF5760at 132.148 kb on - strand, within GFF5760at 132.197 kb on + strand, within GFF5760at 132.197 kb on + strand, within GFF5760at 132.207 kb on + strand, within GFF5760at 132.207 kb on + strand, within GFF5760at 132.207 kb on + strand, within GFF5760at 132.207 kb on + strand, within GFF5760at 132.207 kb on + strand, within GFF5760at 132.207 kb on + strand, within GFF5760at 132.207 kb on + strand, within GFF5760at 132.208 kb on - strand, within GFF5760at 132.208 kb on - strand, within GFF5760at 132.246 kb on + strand, within GFF5760at 132.246 kb on + strand, within GFF5760at 132.246 kb on + strand, within GFF5760at 132.246 kb on + strand, within GFF5760at 132.246 kb on + strand, within GFF5760at 132.247 kb on - strand, within GFF5760at 132.247 kb on - strand, within GFF5760at 132.247 kb on - strand, within GFF5760at 132.247 kb on - strand, within GFF5760at 132.247 kb on - strand, within GFF5760at 132.255 kb on + strand, within GFF5760at 132.255 kb on + strand, within GFF5760at 132.256 kb on - strand, within GFF5760at 132.256 kb on - strand, within GFF5760at 132.256 kb on - strand, within GFF5760at 132.256 kb on - strand, within GFF5760at 132.321 kb on + strand, within GFF5760at 132.321 kb on + strand, within GFF5760at 132.321 kb on + strand, within GFF5760at 132.480 kb on + strand, within GFF5760at 132.480 kb on + strand, within GFF5760at 132.480 kb on + strand, within GFF5760at 132.480 kb on + strand, within GFF5760at 132.480 kb on + strand, within GFF5760at 132.480 kb on + strand, within GFF5760at 132.481 kb on - strand, within GFF5760at 132.481 kb on - strand, within GFF5760at 132.481 kb on - strand, within GFF5760at 132.481 kb on - strand, within GFF5760at 132.481 kb on - strand, within GFF5760at 132.481 kb on - strand, within GFF5760at 132.481 kb on - strand, within GFF5760at 132.481 kb on - strand, within GFF5760at 132.603 kb on + strandat 132.603 kb on + strandat 132.603 kb on + strandat 132.603 kb on + strandat 132.604 kb on - strandat 132.604 kb on - strandat 132.607 kb on + strandat 132.607 kb on + strandat 132.608 kb on - strandat 132.608 kb on - strandat 132.608 kb on - strandat 132.688 kb on + strandat 132.690 kb on + strandat 132.690 kb on + strandat 132.690 kb on + strandat 132.690 kb on + strandat 132.690 kb on + strandat 132.691 kb on - strandat 132.691 kb on - strandat 132.691 kb on - strandat 132.691 kb on - strandat 132.723 kb on + strandat 132.723 kb on + strandat 132.724 kb on - strandat 132.894 kb on + strand, within GFF5761at 132.894 kb on + strand, within GFF5761at 132.894 kb on + strand, within GFF5761at 132.894 kb on + strand, within GFF5761at 132.894 kb on + strand, within GFF5761at 132.894 kb on + strand, within GFF5761at 132.894 kb on + strand, within GFF5761at 132.894 kb on + strand, within GFF5761at 132.894 kb on + strand, within GFF5761at 132.894 kb on + strand, within GFF5761at 132.894 kb on + strand, within GFF5761at 132.894 kb on + strand, within GFF5761at 132.895 kb on - strand, within GFF5761at 132.895 kb on - strand, within GFF5761at 132.918 kb on + strand, within GFF5761at 132.919 kb on - strand, within GFF5761at 132.919 kb on - strand, within GFF5761at 132.919 kb on - strand, within GFF5761at 132.919 kb on - strand, within GFF5761at 133.056 kb on + strand, within GFF5761at 133.056 kb on + strand, within GFF5761at 133.320 kb on + strand, within GFF5761at 133.320 kb on + strand, within GFF5761at 133.321 kb on - strand, within GFF5761at 133.383 kb on + strand, within GFF5761at 133.384 kb on - strand, within GFF5761at 133.426 kb on - strand, within GFF5761at 133.656 kb on + strandat 133.657 kb on - strandat 133.657 kb on - strandat 134.158 kb on - strand, within GFF5762at 134.158 kb on - strand, within GFF5762at 134.532 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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131,703 + GFF5759 0.21 -1.6
131,703 + GFF5759 0.21 -1.1
131,713 + GFF5759 0.24 +2.1
131,713 + GFF5759 0.24 +2.1
131,713 + GFF5759 0.24 -0.3
131,713 + GFF5759 0.24 -0.1
131,714 - GFF5759 0.24 -0.7
131,714 - GFF5759 0.24 -1.9
131,714 - GFF5759 0.24 -0.0
131,714 - GFF5759 0.24 +0.2
131,714 - GFF5759 0.24 +0.5
131,714 - GFF5759 0.24 -2.8
131,715 + GFF5759 0.24 -3.2
131,715 + GFF5759 0.24 -1.6
131,715 + GFF5759 0.24 -2.6
131,715 + GFF5759 0.24 +1.1
131,715 + GFF5759 0.24 +1.1
131,715 + GFF5759 0.24 -1.5
131,715 + GFF5759 0.24 -1.6
131,715 + GFF5759 0.24 -1.4
131,716 - GFF5759 0.24 -0.4
131,716 - GFF5759 0.24 -1.7
131,716 - GFF5759 0.24 -0.4
131,716 - GFF5759 0.24 -1.2
131,716 - GFF5759 0.24 -0.5
131,716 - GFF5759 0.24 +1.2
131,716 - GFF5759 0.24 +0.3
131,716 - GFF5759 0.24 -1.5
131,716 - GFF5759 0.24 -1.0
131,716 - GFF5759 0.24 -0.2
131,716 - GFF5759 0.24 -1.0
131,716 - GFF5759 0.24 -1.8
131,716 - GFF5759 0.24 +0.8
132,147 + GFF5760 0.22 +3.1
132,147 + GFF5760 0.22 -1.1
132,147 + GFF5760 0.22 -0.8
132,147 + GFF5760 0.22 -0.9
132,147 + GFF5760 0.22 +0.4
132,147 + GFF5760 0.22 -1.6
132,148 - GFF5760 0.22 -0.5
132,148 - GFF5760 0.22 +0.3
132,148 - GFF5760 0.22 -1.3
132,148 - GFF5760 0.22 -0.4
132,197 + GFF5760 0.30 +0.4
132,197 + GFF5760 0.30 +0.4
132,207 + GFF5760 0.32 -2.4
132,207 + GFF5760 0.32 -2.3
132,207 + GFF5760 0.32 -2.8
132,207 + GFF5760 0.32 -0.5
132,207 + GFF5760 0.32 +0.5
132,207 + GFF5760 0.32 -0.9
132,207 + GFF5760 0.32 -1.5
132,208 - GFF5760 0.32 +1.6
132,208 - GFF5760 0.32 +2.8
132,246 + GFF5760 0.39 -1.8
132,246 + GFF5760 0.39 +0.5
132,246 + GFF5760 0.39 -1.4
132,246 + GFF5760 0.39 -1.2
132,246 + GFF5760 0.39 -3.1
132,247 - GFF5760 0.39 -2.3
132,247 - GFF5760 0.39 -0.3
132,247 - GFF5760 0.39 -1.7
132,247 - GFF5760 0.39 -0.4
132,247 - GFF5760 0.39 +0.0
132,255 + GFF5760 0.40 -0.2
132,255 + GFF5760 0.40 -0.8
132,256 - GFF5760 0.40 -1.4
132,256 - GFF5760 0.40 +0.2
132,256 - GFF5760 0.40 -0.7
132,256 - GFF5760 0.40 -2.2
132,321 + GFF5760 0.52 +0.4
132,321 + GFF5760 0.52 -0.8
132,321 + GFF5760 0.52 -1.5
132,480 + GFF5760 0.79 -0.6
132,480 + GFF5760 0.79 +1.0
132,480 + GFF5760 0.79 +0.3
132,480 + GFF5760 0.79 +0.8
132,480 + GFF5760 0.79 -0.8
132,480 + GFF5760 0.79 +3.3
132,481 - GFF5760 0.79 +0.5
132,481 - GFF5760 0.79 -0.9
132,481 - GFF5760 0.79 +0.4
132,481 - GFF5760 0.79 +1.2
132,481 - GFF5760 0.79 +0.4
132,481 - GFF5760 0.79 +0.3
132,481 - GFF5760 0.79 -0.8
132,481 - GFF5760 0.79 -1.3
132,603 + -0.2
132,603 + -0.7
132,603 + +1.4
132,603 + -0.3
132,604 - +0.1
132,604 - -0.8
132,607 + +0.7
132,607 + -0.7
132,608 - -1.5
132,608 - +1.8
132,608 - +1.5
132,688 + -2.1
132,690 + -0.2
132,690 + -1.5
132,690 + +0.4
132,690 + -2.8
132,690 + -0.5
132,691 - +0.0
132,691 - -2.2
132,691 - +0.1
132,691 - +0.1
132,723 + +0.5
132,723 + -1.2
132,724 - -1.0
132,894 + GFF5761 0.26 +3.1
132,894 + GFF5761 0.26 -0.4
132,894 + GFF5761 0.26 +0.4
132,894 + GFF5761 0.26 +0.5
132,894 + GFF5761 0.26 +3.3
132,894 + GFF5761 0.26 -2.7
132,894 + GFF5761 0.26 -1.5
132,894 + GFF5761 0.26 +1.2
132,894 + GFF5761 0.26 -0.7
132,894 + GFF5761 0.26 +0.1
132,894 + GFF5761 0.26 +0.7
132,894 + GFF5761 0.26 -0.2
132,895 - GFF5761 0.26 -0.9
132,895 - GFF5761 0.26 +1.8
132,918 + GFF5761 0.29 +0.8
132,919 - GFF5761 0.29 +0.1
132,919 - GFF5761 0.29 +1.0
132,919 - GFF5761 0.29 -1.0
132,919 - GFF5761 0.29 -1.1
133,056 + GFF5761 0.45 +0.5
133,056 + GFF5761 0.45 +0.7
133,320 + GFF5761 0.75 -0.7
133,320 + GFF5761 0.75 -0.9
133,321 - GFF5761 0.75 -0.2
133,383 + GFF5761 0.83 +3.7
133,384 - GFF5761 0.83 -1.5
133,426 - GFF5761 0.88 +0.5
133,656 + -2.1
133,657 - -1.3
133,657 - +1.2
134,158 - GFF5762 0.61 -0.2
134,158 - GFF5762 0.61 +0.4
134,532 + +1.7

Or see this region's nucleotide sequence