Strain Fitness in Variovorax sp. SCN45 around GFF5746

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5745 and GFF5746 are separated by 16 nucleotidesGFF5746 and GFF5747 overlap by 4 nucleotides GFF5745 - Flagellar hook-length control protein FliK, at 117,444 to 118,883 GFF5745 GFF5746 - Flagellar protein FliJ, at 118,900 to 119,355 GFF5746 GFF5747 - Flagellum-specific ATP synthase FliI, at 119,352 to 120,821 GFF5747 Position (kb) 118 119 120Strain fitness (log2 ratio) -2 -1 0 1 2at 118.220 kb on + strand, within GFF5745at 119.210 kb on + strand, within GFF5746at 119.211 kb on - strand, within GFF5746at 119.222 kb on + strand, within GFF5746at 119.506 kb on + strand, within GFF5747at 119.506 kb on + strand, within GFF5747at 119.692 kb on + strand, within GFF5747at 119.803 kb on + strand, within GFF5747at 119.803 kb on + strand, within GFF5747at 119.804 kb on - strand, within GFF5747at 120.017 kb on - strand, within GFF5747at 120.038 kb on - strand, within GFF5747

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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118,220 + GFF5745 0.54 -0.4
119,210 + GFF5746 0.68 -1.7
119,211 - GFF5746 0.68 -0.2
119,222 + GFF5746 0.71 +2.1
119,506 + GFF5747 0.10 -2.1
119,506 + GFF5747 0.10 -1.1
119,692 + GFF5747 0.23 -0.1
119,803 + GFF5747 0.31 +0.0
119,803 + GFF5747 0.31 +0.2
119,804 - GFF5747 0.31 -2.7
120,017 - GFF5747 0.45 +0.6
120,038 - GFF5747 0.47 +0.6

Or see this region's nucleotide sequence