Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5723 and GFF5724 are separated by 85 nucleotides GFF5724 and GFF5725 are separated by 57 nucleotides GFF5725 and GFF5726 are separated by 4 nucleotides GFF5726 and GFF5727 are separated by 7 nucleotides
GFF5723 - Flagellar protein FlgJ [peptidoglycan hydrolase], at 92,342 to 93,358
GFF5723
GFF5724 - Positive regulator of CheA protein activity (CheW), at 93,444 to 93,959
GFF5724
GFF5725 - Methyl-accepting chemotaxis sensor/transducer protein, at 94,017 to 95,576
GFF5725
GFF5726 - no description, at 95,581 to 95,868
GFF5726
GFF5727 - Methyl-accepting chemotaxis sensor/transducer protein, at 95,876 to 97,612
GFF5727
Position (kb) 94
95
96 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 93.131 kb on + strand, within GFF5723 at 93.132 kb on - strand, within GFF5723 at 93.132 kb on - strand, within GFF5723 at 93.177 kb on - strand, within GFF5723 at 93.185 kb on + strand, within GFF5723 at 93.186 kb on - strand, within GFF5723 at 93.300 kb on - strand at 93.317 kb on + strand at 93.980 kb on - strand at 94.031 kb on + strand at 94.258 kb on - strand, within GFF5725 at 94.581 kb on + strand, within GFF5725 at 95.127 kb on - strand, within GFF5725 at 96.431 kb on + strand, within GFF5727 at 96.431 kb on + strand, within GFF5727 at 96.432 kb on - strand, within GFF5727
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 93,131 + GFF5723 0.78 -3.3 93,132 - GFF5723 0.78 -2.9 93,132 - GFF5723 0.78 +0.1 93,177 - GFF5723 0.82 -0.3 93,185 + GFF5723 0.83 -1.2 93,186 - GFF5723 0.83 +0.2 93,300 - +1.6 93,317 + -1.0 93,980 - -0.5 94,031 + -2.0 94,258 - GFF5725 0.15 -2.9 94,581 + GFF5725 0.36 +0.7 95,127 - GFF5725 0.71 -0.1 96,431 + GFF5727 0.32 -3.3 96,431 + GFF5727 0.32 +1.9 96,432 - GFF5727 0.32 -2.3
Or see this region's nucleotide sequence