Strain Fitness in Variovorax sp. SCN45 around GFF5629

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
6,323	+		GFF5628	0.17	-1.7
6,323	+		GFF5628	0.17	-0.2
6,323	+		GFF5628	0.17	-3.5
6,323	+		GFF5628	0.17	-0.7
6,323	+		GFF5628	0.17	-1.7
6,324	-		GFF5628	0.17	-1.2
6,324	-		GFF5628	0.17	-0.1
6,324	-		GFF5628	0.17	+2.5
6,324	-		GFF5628	0.17	-0.2
6,324	-		GFF5628	0.17	+1.6
6,324	-		GFF5628	0.17	+1.0
6,599	+		GFF5628	0.46	+0.7
6,600	-		GFF5628	0.46	-1.5
6,662	+		GFF5628	0.53	-2.9
6,662	+		GFF5628	0.53	-0.2
6,662	+		GFF5628	0.53	-3.1
6,662	+		GFF5628	0.53	+0.5
6,662	+		GFF5628	0.53	-2.0
6,662	+		GFF5628	0.53	-1.0
6,662	+		GFF5628	0.53	+2.1
6,663	-		GFF5628	0.53	-2.5
6,663	-		GFF5628	0.53	+0.4
6,663	-		GFF5628	0.53	+0.5
6,663	-		GFF5628	0.53	-1.5
6,663	-		GFF5628	0.53	-0.9
7,106	+				+0.0
7,106	+				+1.2
7,210	+				-0.7
7,210	+				-1.2
7,210	+				+0.5
7,210	+				-1.1
7,210	+				+0.6
7,210	+				-0.7
7,211	-				-0.0
7,211	-				-0.4
7,223	+				-0.1
7,223	+				-0.2
7,223	+				-0.1
7,223	+				+2.1
7,224	-				+1.5
7,231	+				-2.0
7,235	+				-0.7
7,235	+				+1.2
7,235	+				-1.0
7,235	+				+0.2
7,235	+				-1.4
7,235	+				+0.5
7,235	+				+0.7
7,236	-				-0.4
7,236	-				+1.6
7,236	-				-1.2
7,236	-				+2.3
7,236	-				+1.6
7,404	+				+0.4
7,404	+				-0.1
7,404	+				-1.7
7,405	-				-0.8
7,405	-				-0.4
7,551	+		GFF5629	0.19	-0.2
7,551	+		GFF5629	0.19	+0.1
7,551	+		GFF5629	0.19	-0.7
7,551	+		GFF5629	0.19	+1.5
7,551	+		GFF5629	0.19	-0.6
7,551	+		GFF5629	0.19	-3.0
7,551	+		GFF5629	0.19	-0.7
7,551	+		GFF5629	0.19	-1.9
7,551	+		GFF5629	0.19	-0.5
7,551	+		GFF5629	0.19	-1.1
7,551	+		GFF5629	0.19	+0.8
7,551	+		GFF5629	0.19	-0.5
7,551	+		GFF5629	0.19	+0.5
7,551	+		GFF5629	0.19	+1.1
7,551	+		GFF5629	0.19	-2.3
7,551	+		GFF5629	0.19	-3.3
7,551	+		GFF5629	0.19	-1.2
7,551	+		GFF5629	0.19	-2.1
7,551	+		GFF5629	0.19	-2.4
7,551	+		GFF5629	0.19	+2.8
7,552	-		GFF5629	0.19	-0.5
7,552	-		GFF5629	0.19	-4.2
7,552	-		GFF5629	0.19	-0.0
7,552	-		GFF5629	0.19	-2.0
7,552	-		GFF5629	0.19	-0.3
7,552	-		GFF5629	0.19	+2.1
7,552	-		GFF5629	0.19	-1.8
7,552	-		GFF5629	0.19	+0.5
7,552	-		GFF5629	0.19	-0.6
7,552	-		GFF5629	0.19	-0.7
7,552	-		GFF5629	0.19	-0.0
7,552	-		GFF5629	0.19	+1.1
7,552	-		GFF5629	0.19	-1.2
7,758	+		GFF5629	0.31	-0.7
7,758	+		GFF5629	0.31	-0.1
7,758	+		GFF5629	0.31	-0.6
7,758	+		GFF5629	0.31	-2.1
7,758	+		GFF5629	0.31	+0.2
7,758	+		GFF5629	0.31	-1.2
7,758	+		GFF5629	0.31	+0.1
7,758	+		GFF5629	0.31	-2.1
7,759	-		GFF5629	0.31	-0.2
7,759	-		GFF5629	0.31	-1.8
7,759	-		GFF5629	0.31	-1.6
7,759	-		GFF5629	0.31	-2.8
7,759	-		GFF5629	0.31	-0.5
7,759	-		GFF5629	0.31	+0.7
7,759	-		GFF5629	0.31	-1.5
7,759	-		GFF5629	0.31	+1.5
7,947	+		GFF5629	0.42	-2.3
7,947	+		GFF5629	0.42	+0.6
7,947	+		GFF5629	0.42	-1.6
7,948	-		GFF5629	0.42	-2.3
7,948	-		GFF5629	0.42	-3.3
8,220	+		GFF5629	0.58	+1.3
8,220	+		GFF5629	0.58	-0.4
8,220	+		GFF5629	0.58	-0.5
8,220	+		GFF5629	0.58	+0.6
8,220	+		GFF5629	0.58	-1.4
8,221	-		GFF5629	0.58	+0.7
8,221	-		GFF5629	0.58	-0.5
8,358	+		GFF5629	0.66	-3.2
8,358	+		GFF5629	0.66	-1.4
8,358	+		GFF5629	0.66	+1.3
8,358	+		GFF5629	0.66	+0.3
8,358	+		GFF5629	0.66	-2.4
8,358	+		GFF5629	0.66	+0.7
8,358	+		GFF5629	0.66	+1.3
8,358	+		GFF5629	0.66	-3.1
8,358	+		GFF5629	0.66	-0.2
8,358	+		GFF5629	0.66	-1.6
8,359	-		GFF5629	0.66	-0.3
8,359	-		GFF5629	0.66	-0.3
8,359	-		GFF5629	0.66	+0.6
8,359	-		GFF5629	0.66	+1.1
8,359	-		GFF5629	0.66	+0.8
8,359	-		GFF5629	0.66	-1.7
8,391	+		GFF5629	0.68	-2.1
8,391	+		GFF5629	0.68	-2.1
8,391	+		GFF5629	0.68	+0.7
8,392	-		GFF5629	0.68	-2.7
8,392	-		GFF5629	0.68	-0.1
8,469	+		GFF5629	0.73	+1.1
8,469	+		GFF5629	0.73	-0.9
8,469	+		GFF5629	0.73	-0.2
8,469	+		GFF5629	0.73	+0.9
8,469	+		GFF5629	0.73	+0.6
8,469	+		GFF5629	0.73	-1.8
8,469	+		GFF5629	0.73	+0.1
8,470	-		GFF5629	0.73	+1.0
8,470	-		GFF5629	0.73	-1.7
8,470	-		GFF5629	0.73	-0.0
8,470	-		GFF5629	0.73	-1.3
8,470	-		GFF5629	0.73	+1.2
8,470	-		GFF5629	0.73	-0.2
8,470	-		GFF5629	0.73	-1.3
8,499	+		GFF5629	0.74	+0.3
8,499	+		GFF5629	0.74	-0.4
8,500	-		GFF5629	0.74	-0.6
8,500	-		GFF5629	0.74	-1.5
8,500	-		GFF5629	0.74	+2.1
8,601	+		GFF5629	0.80	-0.3
8,601	+		GFF5629	0.80	-1.9
8,601	+		GFF5629	0.80	+1.0
8,601	+		GFF5629	0.80	-0.1
8,601	+		GFF5629	0.80	-2.0
8,601	+		GFF5629	0.80	-1.1
8,601	+		GFF5629	0.80	-2.7
8,601	+		GFF5629	0.80	+0.3
8,601	+		GFF5629	0.80	-0.5
8,601	+		GFF5629	0.80	-1.2
8,601	+		GFF5629	0.80	-1.5
8,602	-		GFF5629	0.80	-0.1
8,602	-		GFF5629	0.80	-0.7
8,602	-		GFF5629	0.80	-0.6
8,602	-		GFF5629	0.80	+0.3
8,602	-		GFF5629	0.80	+1.2
8,602	-		GFF5629	0.80	-1.8
8,602	-		GFF5629	0.80	-1.8
8,602	-		GFF5629	0.80	+0.1
8,602	-		GFF5629	0.80	-2.9
8,614	-		GFF5629	0.81	-2.1
8,649	+		GFF5629	0.83	-2.2
8,650	-		GFF5629	0.83	+0.1
8,650	-		GFF5629	0.83	-0.8
8,650	-		GFF5629	0.83	-0.2
8,650	-		GFF5629	0.83	-2.5
8,650	-		GFF5629	0.83	+0.6
8,664	+		GFF5629	0.84	-0.6
8,664	+		GFF5629	0.84	+1.7
8,664	+		GFF5629	0.84	-0.7
8,664	+		GFF5629	0.84	+0.0
8,664	+		GFF5629	0.84	+0.5
8,664	+		GFF5629	0.84	-0.5
8,664	+		GFF5629	0.84	-1.2
8,664	+		GFF5629	0.84	-0.9
8,664	+		GFF5629	0.84	-1.3
8,664	+		GFF5629	0.84	-0.4
8,664	+		GFF5629	0.84	+2.5
8,664	+		GFF5629	0.84	+1.0
8,664	+		GFF5629	0.84	-1.7
8,664	+		GFF5629	0.84	+0.4
8,664	+		GFF5629	0.84	-0.4
8,664	+		GFF5629	0.84	+0.9
8,664	+		GFF5629	0.84	+0.8
8,664	+		GFF5629	0.84	-1.8
8,664	+		GFF5629	0.84	-1.5
8,664	+		GFF5629	0.84	+0.5
8,664	+		GFF5629	0.84	+1.3
8,665	-		GFF5629	0.84	+0.1
8,665	-		GFF5629	0.84	-1.9
8,665	-		GFF5629	0.84	+1.1
8,665	-		GFF5629	0.84	+0.1
8,665	-		GFF5629	0.84	+0.5
8,665	-		GFF5629	0.84	-3.0
8,665	-		GFF5629	0.84	-0.5
8,665	-		GFF5629	0.84	-0.6
8,665	-		GFF5629	0.84	-2.5
8,665	-		GFF5629	0.84	+3.0
8,665	-		GFF5629	0.84	-1.4
8,665	-		GFF5629	0.84	-1.4
8,665	-		GFF5629	0.84	-1.1
8,665	-		GFF5629	0.84	-1.6
8,665	-		GFF5629	0.84	-1.2
8,665	-		GFF5629	0.84	-2.9
8,665	-		GFF5629	0.84	-0.8
8,665	-		GFF5629	0.84	-0.4
8,665	-		GFF5629	0.84	-0.5
8,665	-		GFF5629	0.84	-0.7
8,665	-		GFF5629	0.84	-0.8
8,665	-		GFF5629	0.84	-1.2
8,665	-		GFF5629	0.84	+0.7
8,665	-		GFF5629	0.84	-3.0
8,665	-		GFF5629	0.84	-0.3
8,665	-		GFF5629	0.84	-2.1
8,665	-		GFF5629	0.84	-4.3
8,665	-		GFF5629	0.84	+0.2
8,665	-		GFF5629	0.84	-0.5
8,665	-		GFF5629	0.84	-0.3
8,665	-		GFF5629	0.84	+0.5
8,665	-		GFF5629	0.84	-1.3
8,895	+				+0.2
8,895	+				-0.8
8,896	-				-0.7
8,896	-				+2.1
8,896	-				-0.2
8,896	-				-0.9
8,896	-				-2.4
9,083	+		GFF5630	0.23	+0.5
9,083	+		GFF5630	0.23	-1.0
9,084	-		GFF5630	0.23	-2.2
9,084	-		GFF5630	0.23	-2.7
9,176	+		GFF5630	0.39	-0.5
9,176	+		GFF5630	0.39	-0.1
9,176	+		GFF5630	0.39	-1.9
9,176	+		GFF5630	0.39	+0.1
9,176	+		GFF5630	0.39	+0.1
9,177	-		GFF5630	0.39	+1.1
9,177	-		GFF5630	0.39	-0.6
9,177	-		GFF5630	0.39	-2.1
9,177	-		GFF5630	0.39	+0.6
9,177	-		GFF5630	0.39	+1.3
9,177	-		GFF5630	0.39	+0.7
9,177	-		GFF5630	0.39	+2.1
9,177	-		GFF5630	0.39	+0.1
9,177	-		GFF5630	0.39	-1.1
9,177	-		GFF5630	0.39	-1.9
9,177	-		GFF5630	0.39	+0.9
9,266	+		GFF5630	0.55	-0.2
9,266	+		GFF5630	0.55	-1.5
9,266	+		GFF5630	0.55	-1.8
9,266	+		GFF5630	0.55	-3.1
9,266	+		GFF5630	0.55	+0.9
9,266	+		GFF5630	0.55	+1.0
9,266	+		GFF5630	0.55	-0.4
9,266	+		GFF5630	0.55	+1.0
9,266	+		GFF5630	0.55	-1.4
9,266	+		GFF5630	0.55	-0.7
9,267	-		GFF5630	0.55	-0.4
9,267	-		GFF5630	0.55	+1.1
9,267	-		GFF5630	0.55	+2.9
9,267	-		GFF5630	0.55	-2.4
9,267	-		GFF5630	0.55	+0.1
9,267	-		GFF5630	0.55	-1.4
9,267	-		GFF5630	0.55	+0.5
9,267	-		GFF5630	0.55	-0.5
9,267	-		GFF5630	0.55	+0.1
9,563	+				-0.6
9,563	+				-0.1
9,564	-				-1.2
9,564	-				-2.6
9,564	-				-1.8
9,564	-				-3.1
9,625	+				-0.5
9,625	+				-2.1
9,626	-				-0.9
9,626	-				-1.1
9,674	+				+3.0
9,675	-				-0.1
9,779	+		GFF5631	0.40	+0.1
9,779	+		GFF5631	0.40	+0.2
9,780	-		GFF5631	0.40	+0.7