Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5608 and GFF5609 are separated by 9 nucleotides GFF5609 and GFF5610 are separated by 192 nucleotides
GFF5608 - Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.2.8), at 227,461 to 229,575
GFF5608
GFF5609 - Transcriptional regulator, LuxR family, at 229,585 to 230,565
GFF5609
GFF5610 - hypothetical protein, at 230,758 to 232,878
GFF5610
Position (kb) 229
230
231 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 228.634 kb on + strand, within GFF5608 at 228.635 kb on - strand, within GFF5608 at 228.766 kb on + strand, within GFF5608 at 228.766 kb on + strand, within GFF5608 at 228.767 kb on - strand, within GFF5608 at 228.967 kb on + strand, within GFF5608 at 228.967 kb on + strand, within GFF5608 at 228.967 kb on + strand, within GFF5608 at 228.967 kb on + strand, within GFF5608 at 228.967 kb on + strand, within GFF5608 at 228.967 kb on + strand, within GFF5608 at 228.967 kb on + strand, within GFF5608 at 228.967 kb on + strand, within GFF5608 at 228.967 kb on + strand, within GFF5608 at 228.967 kb on + strand, within GFF5608 at 228.967 kb on + strand, within GFF5608 at 228.967 kb on + strand, within GFF5608 at 228.967 kb on + strand, within GFF5608 at 228.968 kb on - strand, within GFF5608 at 228.968 kb on - strand, within GFF5608 at 228.968 kb on - strand, within GFF5608 at 228.968 kb on - strand, within GFF5608 at 228.968 kb on - strand, within GFF5608 at 228.968 kb on - strand, within GFF5608 at 228.968 kb on - strand, within GFF5608 at 228.968 kb on - strand, within GFF5608 at 228.968 kb on - strand, within GFF5608 at 228.968 kb on - strand, within GFF5608 at 228.968 kb on - strand, within GFF5608 at 228.968 kb on - strand, within GFF5608 at 229.051 kb on + strand, within GFF5608 at 229.051 kb on + strand, within GFF5608 at 229.051 kb on + strand, within GFF5608 at 229.123 kb on + strand, within GFF5608 at 229.123 kb on + strand, within GFF5608 at 229.123 kb on + strand, within GFF5608 at 229.123 kb on + strand, within GFF5608 at 229.123 kb on + strand, within GFF5608 at 229.123 kb on + strand, within GFF5608 at 229.123 kb on + strand, within GFF5608 at 229.123 kb on + strand, within GFF5608 at 229.123 kb on + strand, within GFF5608 at 229.123 kb on + strand, within GFF5608 at 229.124 kb on - strand, within GFF5608 at 229.124 kb on - strand, within GFF5608 at 229.124 kb on - strand, within GFF5608 at 229.124 kb on - strand, within GFF5608 at 229.124 kb on - strand, within GFF5608 at 229.124 kb on - strand, within GFF5608 at 229.124 kb on - strand, within GFF5608 at 229.144 kb on + strand, within GFF5608 at 229.144 kb on + strand, within GFF5608 at 229.144 kb on + strand, within GFF5608 at 229.144 kb on + strand, within GFF5608 at 229.144 kb on + strand, within GFF5608 at 229.144 kb on + strand, within GFF5608 at 229.144 kb on + strand, within GFF5608 at 229.144 kb on + strand, within GFF5608 at 229.145 kb on - strand, within GFF5608 at 229.145 kb on - strand, within GFF5608 at 229.145 kb on - strand, within GFF5608 at 229.145 kb on - strand, within GFF5608 at 229.178 kb on - strand, within GFF5608 at 229.178 kb on - strand, within GFF5608 at 229.178 kb on - strand, within GFF5608 at 229.178 kb on - strand, within GFF5608 at 229.225 kb on + strand, within GFF5608 at 229.225 kb on + strand, within GFF5608 at 229.225 kb on + strand, within GFF5608 at 229.225 kb on - strand, within GFF5608 at 229.226 kb on - strand, within GFF5608 at 229.226 kb on - strand, within GFF5608 at 229.226 kb on - strand, within GFF5608 at 229.226 kb on - strand, within GFF5608 at 229.226 kb on - strand, within GFF5608 at 229.274 kb on - strand, within GFF5608 at 229.274 kb on - strand, within GFF5608 at 229.306 kb on + strand, within GFF5608 at 229.307 kb on - strand, within GFF5608 at 229.307 kb on - strand, within GFF5608 at 229.307 kb on - strand, within GFF5608 at 229.342 kb on + strand, within GFF5608 at 229.342 kb on + strand, within GFF5608 at 229.342 kb on + strand, within GFF5608 at 229.342 kb on + strand, within GFF5608 at 229.342 kb on + strand, within GFF5608 at 229.342 kb on + strand, within GFF5608 at 229.343 kb on - strand, within GFF5608 at 229.414 kb on + strand at 229.414 kb on + strand at 229.415 kb on - strand at 229.429 kb on + strand at 229.429 kb on + strand at 229.430 kb on - strand at 229.430 kb on - strand at 229.430 kb on - strand at 229.573 kb on + strand at 229.573 kb on + strand at 229.573 kb on + strand at 229.574 kb on - strand at 229.574 kb on - strand at 229.574 kb on - strand at 229.646 kb on + strand at 229.646 kb on + strand at 229.647 kb on - strand at 229.647 kb on - strand at 229.851 kb on - strand, within GFF5609 at 229.962 kb on - strand, within GFF5609 at 230.220 kb on - strand, within GFF5609 at 230.339 kb on + strand, within GFF5609 at 230.339 kb on + strand, within GFF5609 at 230.339 kb on + strand, within GFF5609 at 230.339 kb on + strand, within GFF5609 at 230.340 kb on - strand, within GFF5609 at 230.340 kb on - strand, within GFF5609 at 230.340 kb on - strand, within GFF5609 at 230.340 kb on - strand, within GFF5609 at 230.514 kb on - strand at 230.514 kb on - strand at 230.640 kb on + strand at 230.703 kb on + strand at 230.704 kb on - strand at 230.704 kb on - strand at 230.704 kb on - strand at 230.704 kb on - strand at 230.704 kb on - strand at 230.704 kb on - strand at 230.742 kb on + strand at 230.743 kb on - strand at 230.743 kb on - strand at 230.757 kb on + strand at 230.757 kb on + strand at 230.757 kb on + strand at 230.757 kb on + strand at 230.758 kb on - strand at 230.758 kb on - strand at 230.758 kb on - strand at 230.758 kb on - strand at 230.758 kb on - strand at 230.758 kb on - strand at 230.758 kb on - strand at 230.758 kb on - strand at 230.758 kb on - strand at 231.031 kb on + strand, within GFF5610 at 231.031 kb on + strand, within GFF5610 at 231.031 kb on + strand, within GFF5610 at 231.031 kb on + strand, within GFF5610 at 231.031 kb on + strand, within GFF5610 at 231.031 kb on + strand, within GFF5610 at 231.032 kb on - strand, within GFF5610 at 231.032 kb on - strand, within GFF5610 at 231.032 kb on - strand, within GFF5610 at 231.032 kb on - strand, within GFF5610 at 231.032 kb on - strand, within GFF5610 at 231.103 kb on + strand, within GFF5610 at 231.103 kb on + strand, within GFF5610 at 231.103 kb on + strand, within GFF5610
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 228,634 + GFF5608 0.55 +0.9 228,635 - GFF5608 0.56 +0.9 228,766 + GFF5608 0.62 -0.7 228,766 + GFF5608 0.62 -0.8 228,767 - GFF5608 0.62 +1.6 228,967 + GFF5608 0.71 +0.7 228,967 + GFF5608 0.71 -0.8 228,967 + GFF5608 0.71 -0.9 228,967 + GFF5608 0.71 +0.8 228,967 + GFF5608 0.71 +0.6 228,967 + GFF5608 0.71 -1.4 228,967 + GFF5608 0.71 +1.8 228,967 + GFF5608 0.71 -1.7 228,967 + GFF5608 0.71 -1.4 228,967 + GFF5608 0.71 -0.8 228,967 + GFF5608 0.71 -1.6 228,967 + GFF5608 0.71 -0.4 228,967 + GFF5608 0.71 -4.4 228,968 - GFF5608 0.71 -0.1 228,968 - GFF5608 0.71 -0.6 228,968 - GFF5608 0.71 +0.5 228,968 - GFF5608 0.71 +1.6 228,968 - GFF5608 0.71 -0.7 228,968 - GFF5608 0.71 -2.0 228,968 - GFF5608 0.71 -2.1 228,968 - GFF5608 0.71 -2.3 228,968 - GFF5608 0.71 +1.1 228,968 - GFF5608 0.71 +1.0 228,968 - GFF5608 0.71 -4.1 228,968 - GFF5608 0.71 +0.2 229,051 + GFF5608 0.75 -1.1 229,051 + GFF5608 0.75 +0.4 229,051 + GFF5608 0.75 +0.3 229,123 + GFF5608 0.79 -0.4 229,123 + GFF5608 0.79 +0.5 229,123 + GFF5608 0.79 -1.4 229,123 + GFF5608 0.79 +1.4 229,123 + GFF5608 0.79 -0.3 229,123 + GFF5608 0.79 -0.4 229,123 + GFF5608 0.79 -0.7 229,123 + GFF5608 0.79 -1.9 229,123 + GFF5608 0.79 +1.7 229,123 + GFF5608 0.79 -0.2 229,124 - GFF5608 0.79 -0.2 229,124 - GFF5608 0.79 -0.7 229,124 - GFF5608 0.79 -0.9 229,124 - GFF5608 0.79 -2.4 229,124 - GFF5608 0.79 -0.1 229,124 - GFF5608 0.79 +0.7 229,124 - GFF5608 0.79 +1.8 229,144 + GFF5608 0.80 -1.7 229,144 + GFF5608 0.80 -0.7 229,144 + GFF5608 0.80 +0.8 229,144 + GFF5608 0.80 -0.5 229,144 + GFF5608 0.80 +0.3 229,144 + GFF5608 0.80 -0.5 229,144 + GFF5608 0.80 -1.5 229,144 + GFF5608 0.80 +0.5 229,145 - GFF5608 0.80 +0.0 229,145 - GFF5608 0.80 -0.2 229,145 - GFF5608 0.80 -0.1 229,145 - GFF5608 0.80 -0.2 229,178 - GFF5608 0.81 -0.9 229,178 - GFF5608 0.81 -3.0 229,178 - GFF5608 0.81 -0.7 229,178 - GFF5608 0.81 -0.4 229,225 + GFF5608 0.83 -0.6 229,225 + GFF5608 0.83 -1.0 229,225 + GFF5608 0.83 -2.1 229,225 - GFF5608 0.83 -1.7 229,226 - GFF5608 0.83 -2.1 229,226 - GFF5608 0.83 +0.0 229,226 - GFF5608 0.83 +0.6 229,226 - GFF5608 0.83 -0.6 229,226 - GFF5608 0.83 +1.4 229,274 - GFF5608 0.86 -1.4 229,274 - GFF5608 0.86 -2.7 229,306 + GFF5608 0.87 -1.6 229,307 - GFF5608 0.87 -0.2 229,307 - GFF5608 0.87 +0.8 229,307 - GFF5608 0.87 -0.1 229,342 + GFF5608 0.89 -0.1 229,342 + GFF5608 0.89 -1.3 229,342 + GFF5608 0.89 +0.8 229,342 + GFF5608 0.89 +0.4 229,342 + GFF5608 0.89 -1.1 229,342 + GFF5608 0.89 +1.1 229,343 - GFF5608 0.89 -1.0 229,414 + -0.4 229,414 + -2.2 229,415 - +1.5 229,429 + -3.1 229,429 + -2.1 229,430 - -0.7 229,430 - -0.4 229,430 - -0.5 229,573 + -2.3 229,573 + +0.4 229,573 + -2.0 229,574 - +0.7 229,574 - +0.2 229,574 - +2.4 229,646 + +2.1 229,646 + -0.1 229,647 - +0.3 229,647 - -0.4 229,851 - GFF5609 0.27 -0.3 229,962 - GFF5609 0.38 -2.2 230,220 - GFF5609 0.65 +1.0 230,339 + GFF5609 0.77 -2.1 230,339 + GFF5609 0.77 +1.2 230,339 + GFF5609 0.77 +2.0 230,339 + GFF5609 0.77 +0.3 230,340 - GFF5609 0.77 -1.2 230,340 - GFF5609 0.77 -0.4 230,340 - GFF5609 0.77 -0.6 230,340 - GFF5609 0.77 -0.6 230,514 - -2.5 230,514 - -0.9 230,640 + +0.2 230,703 + -1.7 230,704 - -1.0 230,704 - -0.4 230,704 - -1.3 230,704 - +0.1 230,704 - -1.6 230,704 - +0.6 230,742 + +1.8 230,743 - +0.1 230,743 - -1.3 230,757 + -1.3 230,757 + +0.1 230,757 + -2.7 230,757 + +0.1 230,758 - -1.6 230,758 - -0.9 230,758 - +1.5 230,758 - -0.7 230,758 - +3.0 230,758 - -0.2 230,758 - +1.4 230,758 - -2.1 230,758 - +1.2 231,031 + GFF5610 0.13 -0.7 231,031 + GFF5610 0.13 +0.9 231,031 + GFF5610 0.13 -1.4 231,031 + GFF5610 0.13 -1.2 231,031 + GFF5610 0.13 -0.2 231,031 + GFF5610 0.13 -0.4 231,032 - GFF5610 0.13 -1.2 231,032 - GFF5610 0.13 -0.3 231,032 - GFF5610 0.13 -0.6 231,032 - GFF5610 0.13 +0.4 231,032 - GFF5610 0.13 +1.4 231,103 + GFF5610 0.16 -2.3 231,103 + GFF5610 0.16 +1.0 231,103 + GFF5610 0.16 -0.4
Or see this region's nucleotide sequence