Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5575 and GFF5576 are separated by 5 nucleotides GFF5576 and GFF5577 are separated by 4 nucleotides GFF5577 and GFF5578 overlap by 4 nucleotides
GFF5575 - Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, at 194,802 to 196,424
GFF5575
GFF5576 - Acyl-CoA dehydrogenase, at 196,430 to 197,623
GFF5576
GFF5577 - Enoyl-CoA hydratase (EC 4.2.1.17), at 197,628 to 198,482
GFF5577
GFF5578 - Transcriptional regulator, MarR family, at 198,479 to 198,958
GFF5578
Position (kb) 196
197
198 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 195.541 kb on + strand, within GFF5575 at 195.542 kb on - strand, within GFF5575 at 195.542 kb on - strand, within GFF5575 at 195.559 kb on + strand, within GFF5575 at 195.559 kb on + strand, within GFF5575 at 195.559 kb on + strand, within GFF5575 at 195.560 kb on - strand, within GFF5575 at 195.631 kb on + strand, within GFF5575 at 195.631 kb on + strand, within GFF5575 at 195.631 kb on + strand, within GFF5575 at 195.632 kb on - strand, within GFF5575 at 195.632 kb on - strand, within GFF5575 at 196.231 kb on + strand, within GFF5575 at 196.231 kb on + strand, within GFF5575 at 196.232 kb on - strand, within GFF5575 at 196.427 kb on + strand at 196.427 kb on + strand at 196.427 kb on + strand at 196.428 kb on - strand at 196.428 kb on - strand at 196.428 kb on - strand at 196.428 kb on - strand at 196.431 kb on + strand at 196.432 kb on - strand at 196.432 kb on - strand at 196.488 kb on + strand at 196.488 kb on + strand at 196.488 kb on + strand at 196.489 kb on - strand at 196.516 kb on - strand at 196.698 kb on + strand, within GFF5576 at 196.698 kb on + strand, within GFF5576 at 196.702 kb on + strand, within GFF5576 at 196.702 kb on + strand, within GFF5576 at 196.702 kb on + strand, within GFF5576 at 196.702 kb on + strand, within GFF5576 at 196.703 kb on - strand, within GFF5576 at 196.703 kb on - strand, within GFF5576 at 196.703 kb on - strand, within GFF5576 at 196.703 kb on - strand, within GFF5576 at 196.703 kb on - strand, within GFF5576 at 196.703 kb on - strand, within GFF5576 at 197.094 kb on + strand, within GFF5576 at 197.095 kb on - strand, within GFF5576 at 197.095 kb on - strand, within GFF5576 at 197.095 kb on - strand, within GFF5576 at 197.095 kb on - strand, within GFF5576 at 197.263 kb on - strand, within GFF5576 at 197.263 kb on - strand, within GFF5576 at 197.299 kb on + strand, within GFF5576 at 197.355 kb on + strand, within GFF5576 at 197.356 kb on - strand, within GFF5576 at 197.437 kb on - strand, within GFF5576 at 197.674 kb on + strand at 198.046 kb on + strand, within GFF5577 at 198.289 kb on + strand, within GFF5577 at 198.289 kb on + strand, within GFF5577 at 198.289 kb on + strand, within GFF5577 at 198.290 kb on - strand, within GFF5577 at 198.394 kb on + strand, within GFF5577 at 198.395 kb on - strand, within GFF5577 at 198.421 kb on + strand at 198.422 kb on - strand at 198.422 kb on - strand at 198.422 kb on - strand at 198.472 kb on + strand at 198.472 kb on + strand at 198.473 kb on - strand at 198.473 kb on - strand at 198.473 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 195,541 + GFF5575 0.46 -2.1 195,542 - GFF5575 0.46 +1.0 195,542 - GFF5575 0.46 -1.2 195,559 + GFF5575 0.47 +0.8 195,559 + GFF5575 0.47 -0.7 195,559 + GFF5575 0.47 +2.0 195,560 - GFF5575 0.47 -1.5 195,631 + GFF5575 0.51 -1.8 195,631 + GFF5575 0.51 -0.2 195,631 + GFF5575 0.51 +1.0 195,632 - GFF5575 0.51 +0.1 195,632 - GFF5575 0.51 +0.3 196,231 + GFF5575 0.88 +2.4 196,231 + GFF5575 0.88 +1.5 196,232 - GFF5575 0.88 -1.0 196,427 + +1.3 196,427 + -2.0 196,427 + -4.3 196,428 - +0.7 196,428 - -1.8 196,428 - +1.6 196,428 - +1.4 196,431 + +1.0 196,432 - -2.6 196,432 - -2.2 196,488 + -1.3 196,488 + -0.2 196,488 + +0.3 196,489 - -0.2 196,516 - +0.1 196,698 + GFF5576 0.22 +0.5 196,698 + GFF5576 0.22 +1.7 196,702 + GFF5576 0.23 -1.0 196,702 + GFF5576 0.23 -2.6 196,702 + GFF5576 0.23 +0.1 196,702 + GFF5576 0.23 +3.1 196,703 - GFF5576 0.23 -1.5 196,703 - GFF5576 0.23 -2.7 196,703 - GFF5576 0.23 -2.0 196,703 - GFF5576 0.23 -1.7 196,703 - GFF5576 0.23 -0.9 196,703 - GFF5576 0.23 -2.5 197,094 + GFF5576 0.56 +1.1 197,095 - GFF5576 0.56 +2.7 197,095 - GFF5576 0.56 +0.7 197,095 - GFF5576 0.56 +0.0 197,095 - GFF5576 0.56 -0.1 197,263 - GFF5576 0.70 -3.8 197,263 - GFF5576 0.70 -1.7 197,299 + GFF5576 0.73 +0.4 197,355 + GFF5576 0.77 -0.6 197,356 - GFF5576 0.78 -0.7 197,437 - GFF5576 0.84 -1.2 197,674 + +2.3 198,046 + GFF5577 0.49 +1.7 198,289 + GFF5577 0.77 +0.9 198,289 + GFF5577 0.77 -0.6 198,289 + GFF5577 0.77 -1.8 198,290 - GFF5577 0.77 -0.2 198,394 + GFF5577 0.90 +0.8 198,395 - GFF5577 0.90 -0.1 198,421 + -1.0 198,422 - +0.6 198,422 - +1.1 198,422 - -0.4 198,472 + -0.8 198,472 + -0.2 198,473 - -0.2 198,473 - -0.6 198,473 - -0.7
Or see this region's nucleotide sequence