Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5531 and GFF5532 are separated by 69 nucleotides GFF5532 and GFF5533 are separated by 113 nucleotides GFF5533 and GFF5534 are separated by 10 nucleotides
GFF5531 - hypothetical protein, at 160,763 to 161,158
GFF5531
GFF5532 - Putative oxidoreductase, at 161,228 to 162,010
GFF5532
GFF5533 - hypothetical protein, at 162,124 to 162,501
GFF5533
GFF5534 - Queuine tRNA-ribosyltransferase (EC 2.4.2.29), at 162,512 to 163,684
GFF5534
Position (kb) 162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 161.253 kb on + strand at 161.253 kb on + strand at 161.253 kb on + strand at 161.253 kb on + strand at 161.253 kb on + strand at 161.253 kb on + strand at 161.253 kb on + strand at 161.253 kb on + strand at 161.253 kb on + strand at 161.253 kb on + strand at 161.253 kb on + strand at 161.254 kb on - strand at 161.254 kb on - strand at 161.254 kb on - strand at 161.254 kb on - strand at 161.254 kb on - strand at 161.254 kb on - strand at 161.254 kb on - strand at 161.431 kb on - strand, within GFF5532 at 161.511 kb on + strand, within GFF5532 at 161.511 kb on + strand, within GFF5532 at 161.511 kb on + strand, within GFF5532 at 161.512 kb on - strand, within GFF5532 at 161.512 kb on - strand, within GFF5532 at 161.512 kb on - strand, within GFF5532 at 161.512 kb on - strand, within GFF5532 at 161.512 kb on - strand, within GFF5532 at 161.520 kb on + strand, within GFF5532 at 161.970 kb on + strand at 161.982 kb on + strand at 161.982 kb on + strand at 161.982 kb on + strand at 161.982 kb on + strand at 161.983 kb on - strand at 161.983 kb on - strand at 162.049 kb on + strand at 162.049 kb on + strand at 162.072 kb on + strand at 162.072 kb on + strand at 162.072 kb on + strand at 162.072 kb on + strand at 162.072 kb on + strand at 162.073 kb on - strand at 162.073 kb on - strand at 162.073 kb on - strand at 162.073 kb on - strand at 162.073 kb on - strand at 162.111 kb on + strand at 162.111 kb on + strand at 162.111 kb on + strand at 162.112 kb on - strand at 162.373 kb on + strand, within GFF5533 at 162.373 kb on + strand, within GFF5533 at 162.374 kb on - strand, within GFF5533 at 162.374 kb on - strand, within GFF5533 at 162.374 kb on - strand, within GFF5533 at 162.374 kb on - strand, within GFF5533 at 162.374 kb on - strand, within GFF5533 at 162.466 kb on + strand at 162.466 kb on + strand at 162.467 kb on - strand at 162.467 kb on - strand at 162.467 kb on - strand at 162.467 kb on - strand at 162.500 kb on - strand at 162.500 kb on - strand at 162.500 kb on - strand at 162.609 kb on + strand at 162.609 kb on + strand at 162.610 kb on - strand at 162.612 kb on + strand at 162.612 kb on + strand at 162.612 kb on + strand at 162.612 kb on + strand at 162.612 kb on + strand at 162.612 kb on + strand at 162.612 kb on + strand at 162.612 kb on + strand at 162.612 kb on + strand at 162.612 kb on + strand at 162.612 kb on + strand at 162.612 kb on + strand at 162.613 kb on - strand at 162.613 kb on - strand at 162.613 kb on - strand at 162.613 kb on - strand at 162.613 kb on - strand at 162.613 kb on - strand at 162.613 kb on - strand at 162.613 kb on - strand at 162.613 kb on - strand at 162.681 kb on + strand, within GFF5534 at 162.681 kb on + strand, within GFF5534 at 162.681 kb on + strand, within GFF5534 at 162.682 kb on - strand, within GFF5534 at 162.682 kb on - strand, within GFF5534 at 162.682 kb on - strand, within GFF5534 at 162.936 kb on + strand, within GFF5534 at 162.937 kb on - strand, within GFF5534 at 163.234 kb on - strand, within GFF5534 at 163.234 kb on - strand, within GFF5534
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 161,253 + -1.9 161,253 + -2.1 161,253 + -2.1 161,253 + -1.9 161,253 + -1.5 161,253 + +0.6 161,253 + +1.5 161,253 + -0.5 161,253 + -1.7 161,253 + -1.0 161,253 + -1.9 161,254 - -1.8 161,254 - -0.0 161,254 - -0.2 161,254 - +0.4 161,254 - +1.0 161,254 - +1.2 161,254 - +1.3 161,431 - GFF5532 0.26 +0.1 161,511 + GFF5532 0.36 -0.2 161,511 + GFF5532 0.36 +0.4 161,511 + GFF5532 0.36 -2.0 161,512 - GFF5532 0.36 -1.9 161,512 - GFF5532 0.36 -0.3 161,512 - GFF5532 0.36 +0.4 161,512 - GFF5532 0.36 -0.4 161,512 - GFF5532 0.36 +0.8 161,520 + GFF5532 0.37 -1.3 161,970 + -2.2 161,982 + -0.5 161,982 + -1.5 161,982 + -1.0 161,982 + -0.3 161,983 - +0.8 161,983 - -0.2 162,049 + +0.9 162,049 + +0.4 162,072 + -1.2 162,072 + +1.5 162,072 + +0.7 162,072 + -1.4 162,072 + -1.2 162,073 - -2.3 162,073 - +0.6 162,073 - +0.4 162,073 - -0.3 162,073 - -0.4 162,111 + +0.1 162,111 + +0.1 162,111 + -0.4 162,112 - -0.7 162,373 + GFF5533 0.66 +0.4 162,373 + GFF5533 0.66 +0.1 162,374 - GFF5533 0.66 -2.0 162,374 - GFF5533 0.66 +0.9 162,374 - GFF5533 0.66 +0.5 162,374 - GFF5533 0.66 +2.4 162,374 - GFF5533 0.66 -2.8 162,466 + +0.8 162,466 + -0.1 162,467 - -0.6 162,467 - -1.2 162,467 - +0.2 162,467 - +0.8 162,500 - -0.9 162,500 - -2.3 162,500 - -1.8 162,609 + -1.8 162,609 + -0.9 162,610 - -2.4 162,612 + +0.3 162,612 + -1.2 162,612 + +1.2 162,612 + -0.2 162,612 + +1.4 162,612 + +0.1 162,612 + -1.0 162,612 + -2.2 162,612 + +0.1 162,612 + +0.1 162,612 + +0.0 162,612 + -2.0 162,613 - -1.2 162,613 - +1.4 162,613 - +2.4 162,613 - +2.4 162,613 - +0.6 162,613 - +0.1 162,613 - -1.6 162,613 - -2.0 162,613 - +2.4 162,681 + GFF5534 0.14 +0.8 162,681 + GFF5534 0.14 -1.7 162,681 + GFF5534 0.14 +1.5 162,682 - GFF5534 0.14 -0.7 162,682 - GFF5534 0.14 -1.6 162,682 - GFF5534 0.14 +0.8 162,936 + GFF5534 0.36 +0.4 162,937 - GFF5534 0.36 +2.4 163,234 - GFF5534 0.62 -0.2 163,234 - GFF5534 0.62 -1.6
Or see this region's nucleotide sequence