Strain Fitness in Variovorax sp. SCN45 around GFF5466

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5465 and GFF5466 are separated by 45 nucleotidesGFF5466 and GFF5467 are separated by 140 nucleotides GFF5465 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 94,916 to 95,884 GFF5465 GFF5466 - NAD(P)H oxidoreductase YrkL @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2, at 95,930 to 96,520 GFF5466 GFF5467 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 96,661 to 97,689 GFF5467 Position (kb) 95 96 97Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 95.037 kb on - strand, within GFF5465at 95.082 kb on + strand, within GFF5465at 95.215 kb on - strand, within GFF5465at 95.215 kb on - strand, within GFF5465at 95.215 kb on - strand, within GFF5465at 95.270 kb on + strand, within GFF5465at 95.270 kb on + strand, within GFF5465at 95.270 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.302 kb on - strand, within GFF5465at 95.302 kb on - strand, within GFF5465at 95.302 kb on - strand, within GFF5465at 95.302 kb on - strand, within GFF5465at 95.682 kb on + strand, within GFF5465at 95.683 kb on - strand, within GFF5465at 95.721 kb on + strand, within GFF5465at 95.775 kb on + strand, within GFF5465at 95.775 kb on + strand, within GFF5465at 95.775 kb on + strand, within GFF5465at 95.776 kb on - strand, within GFF5465at 95.923 kb on + strandat 95.923 kb on + strandat 95.923 kb on + strandat 95.923 kb on + strandat 95.923 kb on + strandat 95.924 kb on - strandat 95.924 kb on - strandat 95.924 kb on - strandat 95.924 kb on - strandat 95.924 kb on - strandat 95.924 kb on - strandat 95.927 kb on + strandat 95.928 kb on - strandat 95.928 kb on - strandat 95.930 kb on + strandat 96.274 kb on - strand, within GFF5466at 96.274 kb on - strand, within GFF5466at 96.274 kb on - strand, within GFF5466at 96.357 kb on + strand, within GFF5466at 96.357 kb on + strand, within GFF5466at 96.406 kb on - strand, within GFF5466at 96.406 kb on - strand, within GFF5466at 96.462 kb on + strandat 96.590 kb on - strandat 96.590 kb on - strandat 96.662 kb on + strandat 96.662 kb on + strandat 96.662 kb on + strandat 96.662 kb on + strandat 96.662 kb on + strandat 96.662 kb on + strandat 96.662 kb on + strandat 96.663 kb on - strandat 96.758 kb on + strandat 96.758 kb on + strandat 96.759 kb on - strandat 96.759 kb on - strandat 96.759 kb on - strandat 96.759 kb on - strandat 96.759 kb on - strandat 96.759 kb on - strandat 96.759 kb on - strandat 96.759 kb on - strandat 96.785 kb on + strand, within GFF5467at 96.786 kb on - strand, within GFF5467at 96.957 kb on - strand, within GFF5467at 96.957 kb on - strand, within GFF5467at 96.962 kb on + strand, within GFF5467at 96.962 kb on + strand, within GFF5467at 96.962 kb on + strand, within GFF5467at 96.962 kb on + strand, within GFF5467at 96.962 kb on + strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 96.963 kb on - strand, within GFF5467at 97.058 kb on + strand, within GFF5467at 97.059 kb on - strand, within GFF5467at 97.145 kb on + strand, within GFF5467at 97.145 kb on + strand, within GFF5467at 97.145 kb on + strand, within GFF5467at 97.146 kb on - strand, within GFF5467at 97.146 kb on - strand, within GFF5467at 97.199 kb on + strand, within GFF5467at 97.199 kb on + strand, within GFF5467at 97.199 kb on + strand, within GFF5467at 97.199 kb on + strand, within GFF5467at 97.199 kb on + strand, within GFF5467at 97.200 kb on - strand, within GFF5467at 97.200 kb on - strand, within GFF5467

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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95,037 - GFF5465 0.12 +2.4
95,082 + GFF5465 0.17 +0.3
95,215 - GFF5465 0.31 -0.4
95,215 - GFF5465 0.31 -1.1
95,215 - GFF5465 0.31 -1.3
95,270 + GFF5465 0.37 +0.6
95,270 + GFF5465 0.37 +2.8
95,270 + GFF5465 0.37 +0.3
95,301 + GFF5465 0.40 +0.5
95,301 + GFF5465 0.40 -2.4
95,301 + GFF5465 0.40 -1.0
95,301 + GFF5465 0.40 -2.1
95,301 + GFF5465 0.40 -2.4
95,301 + GFF5465 0.40 +2.0
95,301 + GFF5465 0.40 -1.0
95,301 + GFF5465 0.40 -1.2
95,301 + GFF5465 0.40 -1.2
95,301 + GFF5465 0.40 +0.2
95,301 + GFF5465 0.40 -1.0
95,301 + GFF5465 0.40 -0.1
95,302 - GFF5465 0.40 -0.0
95,302 - GFF5465 0.40 +1.3
95,302 - GFF5465 0.40 -0.4
95,302 - GFF5465 0.40 -0.3
95,682 + GFF5465 0.79 +0.5
95,683 - GFF5465 0.79 -0.9
95,721 + GFF5465 0.83 -1.1
95,775 + GFF5465 0.89 -0.6
95,775 + GFF5465 0.89 -2.5
95,775 + GFF5465 0.89 +0.8
95,776 - GFF5465 0.89 -2.2
95,923 + +0.1
95,923 + +1.4
95,923 + -0.6
95,923 + -0.7
95,923 + -1.0
95,924 - -0.1
95,924 - -0.0
95,924 - -1.8
95,924 - -0.2
95,924 - -3.8
95,924 - +1.6
95,927 + +0.2
95,928 - -1.9
95,928 - -0.3
95,930 + -1.0
96,274 - GFF5466 0.58 -2.4
96,274 - GFF5466 0.58 -0.7
96,274 - GFF5466 0.58 -3.1
96,357 + GFF5466 0.72 -2.2
96,357 + GFF5466 0.72 -0.5
96,406 - GFF5466 0.81 -0.3
96,406 - GFF5466 0.81 -0.2
96,462 + -0.6
96,590 - -0.6
96,590 - -0.4
96,662 + -0.4
96,662 + +1.3
96,662 + -0.0
96,662 + -0.7
96,662 + +0.7
96,662 + +0.4
96,662 + -0.7
96,663 - +0.5
96,758 + -0.6
96,758 + -1.5
96,759 - -0.5
96,759 - -0.4
96,759 - -1.5
96,759 - -0.9
96,759 - +0.1
96,759 - +0.6
96,759 - -0.6
96,759 - +0.9
96,785 + GFF5467 0.12 -2.6
96,786 - GFF5467 0.12 -1.9
96,957 - GFF5467 0.29 +1.1
96,957 - GFF5467 0.29 -0.1
96,962 + GFF5467 0.29 +0.4
96,962 + GFF5467 0.29 -1.7
96,962 + GFF5467 0.29 -0.5
96,962 + GFF5467 0.29 -1.2
96,962 + GFF5467 0.29 -1.2
96,963 - GFF5467 0.29 -0.3
96,963 - GFF5467 0.29 +0.2
96,963 - GFF5467 0.29 +0.5
96,963 - GFF5467 0.29 +0.2
96,963 - GFF5467 0.29 -1.5
96,963 - GFF5467 0.29 +0.4
96,963 - GFF5467 0.29 +0.6
96,963 - GFF5467 0.29 +0.8
97,058 + GFF5467 0.39 -1.3
97,059 - GFF5467 0.39 +0.4
97,145 + GFF5467 0.47 +0.7
97,145 + GFF5467 0.47 -2.5
97,145 + GFF5467 0.47 -1.2
97,146 - GFF5467 0.47 -0.7
97,146 - GFF5467 0.47 -1.0
97,199 + GFF5467 0.52 -1.7
97,199 + GFF5467 0.52 +1.8
97,199 + GFF5467 0.52 -1.7
97,199 + GFF5467 0.52 -1.8
97,199 + GFF5467 0.52 -2.6
97,200 - GFF5467 0.52 +2.3
97,200 - GFF5467 0.52 -0.5

Or see this region's nucleotide sequence