Strain Fitness in Variovorax sp. SCN45 around GFF5436

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
60,280	+		GFF5435	0.23	+1.2
60,280	+		GFF5435	0.23	-2.2
60,280	+		GFF5435	0.23	+0.3
60,280	+		GFF5435	0.23	-0.2
60,280	+		GFF5435	0.23	-0.2
60,280	+		GFF5435	0.23	+0.4
60,280	+		GFF5435	0.23	-2.7
60,280	+		GFF5435	0.23	-1.9
60,280	+		GFF5435	0.23	+0.2
60,280	+		GFF5435	0.23	-2.4
60,280	+		GFF5435	0.23	-1.9
60,280	+		GFF5435	0.23	-0.4
60,280	+		GFF5435	0.23	-0.9
60,280	+		GFF5435	0.23	-1.2
60,280	+		GFF5435	0.23	+1.0
60,280	+		GFF5435	0.23	+0.3
60,280	+		GFF5435	0.23	-0.2
60,280	+		GFF5435	0.23	-0.6
60,280	+		GFF5435	0.23	-0.7
60,280	+		GFF5435	0.23	-1.2
60,280	+		GFF5435	0.23	-0.2
60,280	+		GFF5435	0.23	+1.4
60,280	+		GFF5435	0.23	+0.8
60,280	+		GFF5435	0.23	-0.3
60,280	+		GFF5435	0.23	+0.5
60,280	+		GFF5435	0.23	+1.2
60,280	+		GFF5435	0.23	-1.5
60,280	+		GFF5435	0.23	+1.9
60,280	+		GFF5435	0.23	-2.7
60,280	+		GFF5435	0.23	-0.4
60,280	+		GFF5435	0.23	+0.6
60,280	+		GFF5435	0.23	-0.4
60,280	+		GFF5435	0.23	-2.4
60,280	+		GFF5435	0.23	-1.6
60,280	+		GFF5435	0.23	+0.4
60,280	+		GFF5435	0.23	-0.4
60,280	+		GFF5435	0.23	+0.3
60,280	+		GFF5435	0.23	-0.0
60,280	+		GFF5435	0.23	-0.9
60,280	+		GFF5435	0.23	-2.9
60,280	+		GFF5435	0.23	-2.7
60,280	+		GFF5435	0.23	+1.6
60,280	+		GFF5435	0.23	+2.4
60,280	+		GFF5435	0.23	-0.3
60,280	+		GFF5435	0.23	-1.3
60,280	+		GFF5435	0.23	-0.2
60,281	-		GFF5435	0.23	-0.4
60,281	-		GFF5435	0.23	-3.1
60,281	-		GFF5435	0.23	-0.9
60,281	-		GFF5435	0.23	-1.0
60,281	-		GFF5435	0.23	+0.2
60,281	-		GFF5435	0.23	-0.4
60,281	-		GFF5435	0.23	-0.2
60,281	-		GFF5435	0.23	+1.4
60,281	-		GFF5435	0.23	-2.3
60,281	-		GFF5435	0.23	+0.5
60,281	-		GFF5435	0.23	-0.5
60,281	-		GFF5435	0.23	-1.1
60,281	-		GFF5435	0.23	-1.2
60,281	-		GFF5435	0.23	+0.4
60,281	-		GFF5435	0.23	-0.7
60,281	-		GFF5435	0.23	-0.7
60,281	-		GFF5435	0.23	-0.6
60,281	-		GFF5435	0.23	+0.3
60,281	-		GFF5435	0.23	-0.7
60,281	-		GFF5435	0.23	+2.4
60,281	-		GFF5435	0.23	+0.1
60,281	-		GFF5435	0.23	+0.2
60,281	-		GFF5435	0.23	-0.9
60,281	-		GFF5435	0.23	+0.1
60,281	-		GFF5435	0.23	+0.1
60,281	-		GFF5435	0.23	-0.7
60,281	-		GFF5435	0.23	-0.1
60,281	-		GFF5435	0.23	-2.3
60,281	-		GFF5435	0.23	-0.8
60,281	-		GFF5435	0.23	-0.6
60,281	-		GFF5435	0.23	+1.1
60,281	-		GFF5435	0.23	+3.0
60,281	-		GFF5435	0.23	-3.2
60,310	+		GFF5435	0.25	-1.7
60,310	+		GFF5435	0.25	-1.6
60,310	+		GFF5435	0.25	-1.6
60,310	+		GFF5435	0.25	-0.2
60,310	+		GFF5435	0.25	+1.1
60,311	-		GFF5435	0.25	-2.3
60,311	-		GFF5435	0.25	-0.6
60,311	-		GFF5435	0.25	+0.1
60,397	+		GFF5435	0.32	-0.4
60,398	-		GFF5435	0.32	-3.3
60,398	-		GFF5435	0.32	+2.3
60,398	-		GFF5435	0.32	-2.1
60,398	-		GFF5435	0.32	-1.5
60,398	-		GFF5435	0.32	+0.3
60,398	-		GFF5435	0.32	+1.4
60,398	-		GFF5435	0.32	-1.9
60,398	-		GFF5435	0.32	+1.4
60,398	-		GFF5435	0.32	+0.0
60,398	-		GFF5435	0.32	+0.4
60,398	-		GFF5435	0.32	+0.1
60,409	+		GFF5435	0.33	+0.8
60,409	+		GFF5435	0.33	-0.2
60,481	+		GFF5435	0.39	-1.0
60,742	+		GFF5435	0.61	-0.4
60,742	+		GFF5435	0.61	-0.2
60,742	+		GFF5435	0.61	+2.4
60,742	+		GFF5435	0.61	+1.7
60,742	+		GFF5435	0.61	+0.0
60,742	+		GFF5435	0.61	-1.6
60,742	+		GFF5435	0.61	+0.8
60,742	+		GFF5435	0.61	-0.7
60,743	-		GFF5435	0.61	-1.3
60,743	-		GFF5435	0.61	+2.5
60,743	-		GFF5435	0.61	+0.4
60,743	-		GFF5435	0.61	-1.2
60,743	-		GFF5435	0.61	+0.3
60,743	-		GFF5435	0.61	-0.9
60,743	-		GFF5435	0.61	+2.4
60,743	-		GFF5435	0.61	-2.6
60,772	+		GFF5435	0.63	-2.0
60,772	+		GFF5435	0.63	+0.6
60,772	+		GFF5435	0.63	-2.8
60,772	+		GFF5435	0.63	+0.4
60,772	+		GFF5435	0.63	+1.6
60,773	-		GFF5435	0.63	-2.4
60,773	-		GFF5435	0.63	-3.5
60,773	-		GFF5435	0.63	-0.2
60,773	-		GFF5435	0.63	+0.1
60,773	-		GFF5435	0.63	-0.7
60,773	-		GFF5435	0.63	-2.1
60,773	-		GFF5435	0.63	-1.2
60,793	+		GFF5435	0.65	-0.8
60,793	+		GFF5435	0.65	-1.7
60,793	+		GFF5435	0.65	-1.9
60,793	+		GFF5435	0.65	-0.1
60,793	+		GFF5435	0.65	-1.5
60,793	+		GFF5435	0.65	+0.9
60,794	-		GFF5435	0.65	-0.4
60,794	-		GFF5435	0.65	-0.3
60,794	-		GFF5435	0.65	+0.9
60,794	-		GFF5435	0.65	-0.9
60,794	-		GFF5435	0.65	-0.3
60,794	-		GFF5435	0.65	+0.6
60,860	-		GFF5435	0.70	+1.1
60,886	+		GFF5435	0.72	-2.0
60,886	+		GFF5435	0.72	-1.2
60,886	+		GFF5435	0.72	+1.4
60,887	-		GFF5435	0.73	+0.3
60,887	-		GFF5435	0.73	-0.6
60,887	-		GFF5435	0.73	+0.3
60,887	-		GFF5435	0.73	-1.9
60,887	-		GFF5435	0.73	+0.8
60,887	-		GFF5435	0.73	-1.7
60,887	-		GFF5435	0.73	+0.7
60,973	+		GFF5435	0.80	-2.0
60,973	+		GFF5435	0.80	-1.9
60,973	+		GFF5435	0.80	-1.7
60,973	+		GFF5435	0.80	+0.8
60,973	+		GFF5435	0.80	-1.7
60,973	+		GFF5435	0.80	+1.1
60,973	+		GFF5435	0.80	+1.7
60,973	+		GFF5435	0.80	-0.4
60,973	+		GFF5435	0.80	-0.6
60,973	+		GFF5435	0.80	-0.6
60,973	+		GFF5435	0.80	-1.0
60,973	+		GFF5435	0.80	-1.5
60,973	+		GFF5435	0.80	+1.3
60,973	+		GFF5435	0.80	-2.0
60,973	+		GFF5435	0.80	+2.4
60,973	+		GFF5435	0.80	-0.6
60,973	+		GFF5435	0.80	-0.6
60,974	-		GFF5435	0.80	+0.1
60,974	-		GFF5435	0.80	+0.4
60,974	-		GFF5435	0.80	-0.2
60,974	-		GFF5435	0.80	+1.0
60,974	-		GFF5435	0.80	-0.4
60,974	-		GFF5435	0.80	-0.9
60,974	-		GFF5435	0.80	+0.3
60,974	-		GFF5435	0.80	-1.5
60,974	-		GFF5435	0.80	-0.4
60,974	-		GFF5435	0.80	-0.4
60,974	-		GFF5435	0.80	+0.4
60,974	-		GFF5435	0.80	+1.8
60,974	-		GFF5435	0.80	+0.4
60,974	-		GFF5435	0.80	-1.4
60,974	-		GFF5435	0.80	-0.5
60,974	-		GFF5435	0.80	+0.7
60,974	-		GFF5435	0.80	+0.5
60,974	-		GFF5435	0.80	-2.5
60,974	-		GFF5435	0.80	+1.0
60,974	-		GFF5435	0.80	-2.6
61,123	+				-0.6
61,123	+				-0.7
61,123	+				-1.4
61,124	-				-1.6
61,124	-				+0.4
61,575	+		GFF5436	0.45	-0.4
61,575	+		GFF5436	0.45	+1.3
61,576	-		GFF5436	0.45	-3.3
61,576	-		GFF5436	0.45	-0.7
61,596	+		GFF5436	0.47	-0.9
61,596	+		GFF5436	0.47	-3.0
61,596	+		GFF5436	0.47	+0.1
61,596	+		GFF5436	0.47	-0.1
61,596	+		GFF5436	0.47	-0.2
61,597	-		GFF5436	0.48	-2.4
61,597	-		GFF5436	0.48	-1.4
61,597	-		GFF5436	0.48	-1.4
61,597	-		GFF5436	0.48	-3.4
61,597	-		GFF5436	0.48	+0.6
61,597	-		GFF5436	0.48	+1.0
61,597	-		GFF5436	0.48	-2.4
61,646	+		GFF5436	0.54	-0.9
61,646	+		GFF5436	0.54	-0.6
61,647	-		GFF5436	0.54	+0.3
61,647	-		GFF5436	0.54	-0.0
61,647	-		GFF5436	0.54	-1.4
61,671	+		GFF5436	0.57	+0.3
61,698	+		GFF5436	0.60	+0.4
61,698	+		GFF5436	0.60	+2.6
61,698	+		GFF5436	0.60	-1.2
61,699	-		GFF5436	0.60	+0.4
61,699	-		GFF5436	0.60	-1.9
61,699	-		GFF5436	0.60	+1.1
61,699	-		GFF5436	0.60	-0.1
61,699	-		GFF5436	0.60	-2.3
61,699	-		GFF5436	0.60	-0.5
61,717	-		GFF5436	0.63	-2.5
61,920	+		GFF5436	0.88	-0.6
61,920	+		GFF5436	0.88	+0.5
61,920	+		GFF5436	0.88	-0.5
61,921	-		GFF5436	0.88	-1.1
61,921	-		GFF5436	0.88	+0.4
61,921	-		GFF5436	0.88	-1.2
61,929	+		GFF5436	0.89	-0.7
61,930	-		GFF5436	0.89	-2.7
61,930	-		GFF5436	0.89	+0.6
62,114	+				-1.6
62,114	+				+1.1
62,114	+				-0.6
62,115	-				+0.3
62,115	-				-1.2
62,115	-				+1.0
62,115	-				-3.4
62,216	+		GFF5437	0.15	+0.8
62,216	+		GFF5437	0.15	-0.2
62,216	+		GFF5437	0.15	-2.4
62,216	+		GFF5437	0.15	-1.1
62,217	-		GFF5437	0.15	-0.9
62,217	-		GFF5437	0.15	+0.8
62,217	-		GFF5437	0.15	+0.0
62,217	-		GFF5437	0.15	+0.9
62,217	-		GFF5437	0.15	+3.4
62,217	-		GFF5437	0.15	+1.3
62,217	-		GFF5437	0.15	+0.4
62,217	-		GFF5437	0.15	-0.9
62,217	-		GFF5437	0.15	-0.6
62,217	-		GFF5437	0.15	-2.3
62,217	-		GFF5437	0.15	-2.6
62,217	-		GFF5437	0.15	-0.0
62,217	-		GFF5437	0.15	-1.4
62,222	+		GFF5437	0.16	-0.7
62,222	+		GFF5437	0.16	-3.1
62,222	+		GFF5437	0.16	-0.7
62,223	-		GFF5437	0.16	-0.4
62,223	-		GFF5437	0.16	-1.4
62,223	-		GFF5437	0.16	+0.8
62,223	-		GFF5437	0.16	-2.1
62,241	+		GFF5437	0.17	-0.6
62,241	+		GFF5437	0.17	-1.6
62,242	-		GFF5437	0.17	-1.3
62,242	-		GFF5437	0.17	-1.7
62,242	-		GFF5437	0.17	+1.0
62,242	-		GFF5437	0.17	-2.3
62,242	-		GFF5437	0.17	-1.8
62,321	+		GFF5437	0.23	-0.7
62,321	+		GFF5437	0.23	-0.2
62,321	+		GFF5437	0.23	-1.3
62,321	+		GFF5437	0.23	-0.4
62,321	+		GFF5437	0.23	-1.1
62,321	+		GFF5437	0.23	-0.6
62,321	+		GFF5437	0.23	+0.0
62,321	+		GFF5437	0.23	+0.9
62,321	+		GFF5437	0.23	+0.5
62,321	+		GFF5437	0.23	+0.8
62,321	+		GFF5437	0.23	+0.0
62,321	+		GFF5437	0.23	-1.5
62,321	+		GFF5437	0.23	+0.8
62,321	+		GFF5437	0.23	-0.6
62,321	+		GFF5437	0.23	-1.3
62,321	+		GFF5437	0.23	-0.6
62,322	-		GFF5437	0.23	-1.5
62,322	-		GFF5437	0.23	+1.0
62,322	-		GFF5437	0.23	-0.5
62,322	-		GFF5437	0.23	+1.7
62,322	-		GFF5437	0.23	-2.4
62,372	+		GFF5437	0.27	-0.6
62,372	+		GFF5437	0.27	+0.2
62,372	+		GFF5437	0.27	+1.5
62,372	+		GFF5437	0.27	+0.8
62,372	+		GFF5437	0.27	-1.0
62,372	+		GFF5437	0.27	+2.0
62,372	+		GFF5437	0.27	-0.6
62,373	-		GFF5437	0.27	-2.8
62,373	-		GFF5437	0.27	-0.7
62,373	-		GFF5437	0.27	+0.4
62,373	-		GFF5437	0.27	+1.1
62,373	-		GFF5437	0.27	-0.0
62,373	-		GFF5437	0.27	-1.0
62,373	-		GFF5437	0.27	+0.2
62,660	+		GFF5437	0.49	+0.3
62,660	+		GFF5437	0.49	+0.1
62,660	+		GFF5437	0.49	-2.3
62,660	+		GFF5437	0.49	-0.7
62,660	+		GFF5437	0.49	+0.1
62,660	+		GFF5437	0.49	-1.2
62,660	+		GFF5437	0.49	-0.2
62,660	+		GFF5437	0.49	-0.9
62,660	+		GFF5437	0.49	-0.4
62,660	+		GFF5437	0.49	+2.1
62,660	+		GFF5437	0.49	+0.3
62,660	+		GFF5437	0.49	-0.4
62,660	+		GFF5437	0.49	-0.9
62,660	+		GFF5437	0.49	-2.0
62,660	+		GFF5437	0.49	+1.4
62,660	+		GFF5437	0.49	+1.4
62,660	+		GFF5437	0.49	-0.9
62,660	+		GFF5437	0.49	+0.8
62,660	+		GFF5437	0.49	-1.5
62,660	+		GFF5437	0.49	-0.6
62,660	+		GFF5437	0.49	-1.9
62,660	+		GFF5437	0.49	-1.4
62,660	+		GFF5437	0.49	-1.2
62,660	+		GFF5437	0.49	-0.1
62,660	+		GFF5437	0.49	+1.8
62,660	+		GFF5437	0.49	-2.2
62,660	+		GFF5437	0.49	-1.9
62,661	-		GFF5437	0.49	+0.1
62,661	-		GFF5437	0.49	+1.1
62,661	-		GFF5437	0.49	+1.2
62,661	-		GFF5437	0.49	-0.6
62,661	-		GFF5437	0.49	+0.9
62,661	-		GFF5437	0.49	-0.4
62,661	-		GFF5437	0.49	-0.2
62,661	-		GFF5437	0.49	+0.5
62,661	-		GFF5437	0.49	+1.4
62,661	-		GFF5437	0.49	-3.5
62,661	-		GFF5437	0.49	-0.2
62,661	-		GFF5437	0.49	+0.7
62,661	-		GFF5437	0.49	-1.9
62,661	-		GFF5437	0.49	-2.4
62,661	-		GFF5437	0.49	-1.2
62,661	-		GFF5437	0.49	-2.3
62,661	-		GFF5437	0.49	+0.0
62,661	-		GFF5437	0.49	-1.1
62,661	-		GFF5437	0.49	-2.6
62,661	-		GFF5437	0.49	-4.3
62,661	-		GFF5437	0.49	+0.8
62,661	-		GFF5437	0.49	-1.7
62,661	-		GFF5437	0.49	-0.7
62,661	-		GFF5437	0.49	-1.3
62,816	+		GFF5437	0.60	-0.7
62,816	+		GFF5437	0.60	-1.0
62,816	+		GFF5437	0.60	+0.8
62,816	+		GFF5437	0.60	+0.7
62,816	+		GFF5437	0.60	-1.0
62,816	+		GFF5437	0.60	-2.2
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62,953	+		GFF5437	0.71	+1.9
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