Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5415 and GFF5416 are separated by 4 nucleotides GFF5416 and GFF5417 overlap by 4 nucleotides GFF5417 and GFF5418 are separated by 15 nucleotides
GFF5415 - Type IV fimbrial biogenesis protein PilV, at 39,046 to 39,537
GFF5415
GFF5416 - Type IV fimbrial biogenesis protein PilW, at 39,542 to 40,399
GFF5416
GFF5417 - hypothetical protein, at 40,396 to 40,965
GFF5417
GFF5418 - Type IV fimbrial biogenesis protein PilY1, at 40,981 to 45,978
GFF5418
Position (kb) 40
41 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 39.412 kb on - strand, within GFF5415 at 39.505 kb on + strand at 39.505 kb on + strand at 39.505 kb on + strand at 39.505 kb on + strand at 39.505 kb on + strand at 39.505 kb on + strand at 39.505 kb on + strand at 39.506 kb on - strand at 39.506 kb on - strand at 39.506 kb on - strand at 39.506 kb on - strand at 39.506 kb on - strand at 39.506 kb on - strand at 39.506 kb on - strand at 39.506 kb on - strand at 39.506 kb on - strand at 39.514 kb on + strand at 39.514 kb on + strand at 39.514 kb on + strand at 39.514 kb on + strand at 39.514 kb on + strand at 39.514 kb on + strand at 39.514 kb on + strand at 39.514 kb on + strand at 39.514 kb on + strand at 39.515 kb on - strand at 39.515 kb on - strand at 39.515 kb on - strand at 39.515 kb on - strand at 39.515 kb on - strand at 39.515 kb on - strand at 39.515 kb on - strand at 39.515 kb on - strand at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.697 kb on + strand, within GFF5416 at 39.697 kb on + strand, within GFF5416 at 39.697 kb on + strand, within GFF5416 at 39.697 kb on + strand, within GFF5416 at 39.698 kb on - strand, within GFF5416 at 39.698 kb on - strand, within GFF5416 at 39.698 kb on - strand, within GFF5416 at 39.698 kb on - strand, within GFF5416 at 39.788 kb on + strand, within GFF5416 at 39.884 kb on + strand, within GFF5416 at 39.884 kb on + strand, within GFF5416 at 39.884 kb on + strand, within GFF5416 at 39.884 kb on + strand, within GFF5416 at 39.884 kb on + strand, within GFF5416 at 39.884 kb on + strand, within GFF5416 at 39.884 kb on + strand, within GFF5416 at 39.884 kb on + strand, within GFF5416 at 39.885 kb on - strand, within GFF5416 at 39.885 kb on - strand, within GFF5416 at 39.885 kb on - strand, within GFF5416 at 39.885 kb on - strand, within GFF5416 at 39.885 kb on - strand, within GFF5416 at 39.885 kb on - strand, within GFF5416 at 39.885 kb on - strand, within GFF5416 at 39.885 kb on - strand, within GFF5416 at 39.885 kb on - strand, within GFF5416 at 39.986 kb on + strand, within GFF5416 at 39.986 kb on + strand, within GFF5416 at 39.987 kb on - strand, within GFF5416 at 39.987 kb on - strand, within GFF5416 at 40.037 kb on + strand, within GFF5416 at 40.037 kb on + strand, within GFF5416 at 40.037 kb on + strand, within GFF5416 at 40.037 kb on + strand, within GFF5416 at 40.037 kb on + strand, within GFF5416 at 40.038 kb on - strand, within GFF5416 at 40.038 kb on - strand, within GFF5416 at 40.229 kb on + strand, within GFF5416 at 40.230 kb on - strand, within GFF5416 at 40.352 kb on + strand at 40.352 kb on + strand at 40.352 kb on + strand at 40.352 kb on + strand at 40.352 kb on + strand at 40.353 kb on - strand at 40.353 kb on - strand at 40.490 kb on + strand, within GFF5417 at 40.490 kb on + strand, within GFF5417 at 40.490 kb on + strand, within GFF5417 at 40.490 kb on + strand, within GFF5417 at 40.491 kb on - strand, within GFF5417 at 40.618 kb on + strand, within GFF5417 at 40.618 kb on + strand, within GFF5417 at 40.618 kb on + strand, within GFF5417 at 40.619 kb on - strand, within GFF5417 at 40.625 kb on + strand, within GFF5417 at 40.625 kb on + strand, within GFF5417 at 40.625 kb on + strand, within GFF5417 at 40.625 kb on + strand, within GFF5417 at 40.625 kb on + strand, within GFF5417 at 40.625 kb on + strand, within GFF5417 at 40.625 kb on + strand, within GFF5417 at 40.625 kb on + strand, within GFF5417 at 40.626 kb on - strand, within GFF5417 at 40.626 kb on - strand, within GFF5417 at 40.626 kb on - strand, within GFF5417 at 40.626 kb on - strand, within GFF5417 at 40.626 kb on - strand, within GFF5417 at 40.626 kb on - strand, within GFF5417 at 40.687 kb on + strand, within GFF5417 at 40.687 kb on + strand, within GFF5417 at 40.687 kb on + strand, within GFF5417 at 40.687 kb on + strand, within GFF5417 at 40.687 kb on + strand, within GFF5417 at 40.687 kb on + strand, within GFF5417 at 40.687 kb on + strand, within GFF5417 at 40.687 kb on + strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.722 kb on + strand, within GFF5417 at 40.722 kb on + strand, within GFF5417 at 40.722 kb on + strand, within GFF5417 at 40.723 kb on - strand, within GFF5417 at 40.723 kb on - strand, within GFF5417 at 40.723 kb on - strand, within GFF5417 at 40.769 kb on - strand, within GFF5417 at 40.769 kb on - strand, within GFF5417 at 40.775 kb on - strand, within GFF5417 at 40.775 kb on - strand, within GFF5417 at 40.780 kb on + strand, within GFF5417 at 40.780 kb on + strand, within GFF5417 at 40.789 kb on + strand, within GFF5417 at 40.789 kb on + strand, within GFF5417 at 40.789 kb on + strand, within GFF5417 at 40.789 kb on + strand, within GFF5417 at 40.790 kb on - strand, within GFF5417 at 40.867 kb on + strand, within GFF5417 at 40.867 kb on + strand, within GFF5417 at 40.868 kb on - strand, within GFF5417 at 40.964 kb on - strand at 41.028 kb on + strand at 41.028 kb on + strand at 41.188 kb on + strand at 41.189 kb on - strand at 41.189 kb on - strand at 41.191 kb on + strand at 41.191 kb on + strand at 41.191 kb on + strand at 41.192 kb on - strand at 41.192 kb on - strand at 41.192 kb on - strand at 41.192 kb on - strand at 41.192 kb on - strand at 41.200 kb on + strand at 41.200 kb on + strand at 41.200 kb on + strand at 41.200 kb on + strand at 41.200 kb on + strand at 41.201 kb on - strand at 41.201 kb on - strand at 41.201 kb on - strand at 41.201 kb on - strand at 41.201 kb on - strand at 41.202 kb on + strand at 41.203 kb on - strand at 41.269 kb on + strand at 41.269 kb on + strand at 41.269 kb on + strand at 41.269 kb on + strand at 41.269 kb on + strand at 41.269 kb on + strand at 41.272 kb on + strand at 41.272 kb on + strand at 41.272 kb on + strand at 41.272 kb on + strand at 41.272 kb on + strand at 41.273 kb on - strand at 41.273 kb on - strand at 41.273 kb on - strand at 41.273 kb on - strand at 41.273 kb on - strand at 41.273 kb on - strand at 41.273 kb on - strand at 41.278 kb on + strand at 41.278 kb on + strand at 41.278 kb on + strand at 41.278 kb on + strand at 41.279 kb on - strand at 41.279 kb on - strand at 41.299 kb on + strand at 41.299 kb on + strand at 41.300 kb on - strand at 41.305 kb on + strand at 41.306 kb on - strand at 41.401 kb on + strand at 41.401 kb on + strand at 41.401 kb on + strand at 41.401 kb on + strand at 41.402 kb on - strand at 41.402 kb on - strand at 41.402 kb on - strand at 41.402 kb on - strand at 41.402 kb on - strand at 41.402 kb on - strand at 41.443 kb on + strand at 41.443 kb on + strand at 41.443 kb on + strand at 41.443 kb on + strand at 41.444 kb on - strand at 41.444 kb on - strand at 41.479 kb on - strand at 41.497 kb on + strand, within GFF5418 at 41.497 kb on + strand, within GFF5418 at 41.497 kb on + strand, within GFF5418 at 41.497 kb on + strand, within GFF5418 at 41.497 kb on + strand, within GFF5418 at 41.497 kb on + strand, within GFF5418 at 41.497 kb on + strand, within GFF5418 at 41.498 kb on - strand, within GFF5418 at 41.498 kb on - strand, within GFF5418 at 41.498 kb on - strand, within GFF5418 at 41.498 kb on - strand, within GFF5418 at 41.498 kb on - strand, within GFF5418 at 41.498 kb on - strand, within GFF5418 at 41.498 kb on - strand, within GFF5418 at 41.498 kb on - strand, within GFF5418 at 41.498 kb on - strand, within GFF5418 at 41.534 kb on - strand, within GFF5418 at 41.534 kb on - strand, within GFF5418 at 41.560 kb on + strand, within GFF5418 at 41.560 kb on + strand, within GFF5418 at 41.561 kb on - strand, within GFF5418 at 41.561 kb on - strand, within GFF5418 at 41.575 kb on + strand, within GFF5418 at 41.576 kb on - strand, within GFF5418 at 41.576 kb on - strand, within GFF5418 at 41.964 kb on + strand, within GFF5418 at 41.964 kb on + strand, within GFF5418 at 41.964 kb on + strand, within GFF5418 at 41.965 kb on - strand, within GFF5418 at 41.965 kb on - strand, within GFF5418 at 41.965 kb on - strand, within GFF5418 at 41.965 kb on - strand, within GFF5418
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 39,412 - GFF5415 0.74 +1.7 39,505 + +0.4 39,505 + +1.5 39,505 + +0.1 39,505 + +0.3 39,505 + +1.6 39,505 + +3.1 39,505 + +0.9 39,506 - +1.6 39,506 - +2.0 39,506 - -1.6 39,506 - -1.4 39,506 - +0.7 39,506 - +0.7 39,506 - -1.0 39,506 - +0.8 39,506 - -0.0 39,514 + +2.4 39,514 + +1.2 39,514 + +1.2 39,514 + -0.9 39,514 + -1.7 39,514 + +0.2 39,514 + +0.5 39,514 + -1.6 39,514 + +1.8 39,515 - -2.1 39,515 - +1.1 39,515 - +1.5 39,515 - +1.6 39,515 - +0.5 39,515 - +0.8 39,515 - -0.4 39,515 - -2.6 39,680 + GFF5416 0.16 -1.5 39,680 + GFF5416 0.16 +1.7 39,680 + GFF5416 0.16 +0.7 39,680 + GFF5416 0.16 +0.3 39,680 + GFF5416 0.16 -0.6 39,680 + GFF5416 0.16 -0.1 39,680 + GFF5416 0.16 -1.2 39,680 + GFF5416 0.16 -1.7 39,680 + GFF5416 0.16 +1.2 39,680 + GFF5416 0.16 +0.6 39,680 + GFF5416 0.16 -0.0 39,680 + GFF5416 0.16 -2.4 39,680 + GFF5416 0.16 -0.4 39,680 + GFF5416 0.16 +0.5 39,681 - GFF5416 0.16 +0.1 39,681 - GFF5416 0.16 +0.9 39,681 - GFF5416 0.16 -3.1 39,681 - GFF5416 0.16 +0.6 39,681 - GFF5416 0.16 +1.2 39,681 - GFF5416 0.16 +0.6 39,681 - GFF5416 0.16 +0.7 39,681 - GFF5416 0.16 +0.2 39,681 - GFF5416 0.16 +1.4 39,681 - GFF5416 0.16 +0.5 39,681 - GFF5416 0.16 -1.0 39,681 - GFF5416 0.16 -0.2 39,697 + GFF5416 0.18 +2.0 39,697 + GFF5416 0.18 -3.0 39,697 + GFF5416 0.18 +1.2 39,697 + GFF5416 0.18 -1.4 39,698 - GFF5416 0.18 +1.7 39,698 - GFF5416 0.18 +0.8 39,698 - GFF5416 0.18 -0.6 39,698 - GFF5416 0.18 +0.9 39,788 + GFF5416 0.29 +1.4 39,884 + GFF5416 0.40 +0.7 39,884 + GFF5416 0.40 -0.2 39,884 + GFF5416 0.40 -0.5 39,884 + GFF5416 0.40 -3.4 39,884 + GFF5416 0.40 -1.7 39,884 + GFF5416 0.40 -1.2 39,884 + GFF5416 0.40 +1.4 39,884 + GFF5416 0.40 +3.4 39,885 - GFF5416 0.40 +2.0 39,885 - GFF5416 0.40 +3.2 39,885 - GFF5416 0.40 -1.7 39,885 - GFF5416 0.40 +0.7 39,885 - GFF5416 0.40 -0.0 39,885 - GFF5416 0.40 +1.0 39,885 - GFF5416 0.40 +0.4 39,885 - GFF5416 0.40 +1.0 39,885 - GFF5416 0.40 -0.0 39,986 + GFF5416 0.52 +0.0 39,986 + GFF5416 0.52 +1.6 39,987 - GFF5416 0.52 -1.4 39,987 - GFF5416 0.52 +2.4 40,037 + GFF5416 0.58 +2.2 40,037 + GFF5416 0.58 -0.6 40,037 + GFF5416 0.58 +2.5 40,037 + GFF5416 0.58 +0.1 40,037 + GFF5416 0.58 -2.9 40,038 - GFF5416 0.58 +1.7 40,038 - GFF5416 0.58 +0.8 40,229 + GFF5416 0.80 +2.2 40,230 - GFF5416 0.80 -0.2 40,352 + +1.8 40,352 + -1.3 40,352 + -1.6 40,352 + +1.4 40,352 + -0.3 40,353 - +0.3 40,353 - +1.3 40,490 + GFF5417 0.16 +0.3 40,490 + GFF5417 0.16 +2.6 40,490 + GFF5417 0.16 -0.0 40,490 + GFF5417 0.16 -0.5 40,491 - GFF5417 0.17 -1.7 40,618 + GFF5417 0.39 +0.8 40,618 + GFF5417 0.39 +2.4 40,618 + GFF5417 0.39 -1.7 40,619 - GFF5417 0.39 -0.2 40,625 + GFF5417 0.40 +1.5 40,625 + GFF5417 0.40 +0.8 40,625 + GFF5417 0.40 +3.7 40,625 + GFF5417 0.40 -1.5 40,625 + GFF5417 0.40 -2.0 40,625 + GFF5417 0.40 +0.5 40,625 + GFF5417 0.40 +1.3 40,625 + GFF5417 0.40 -0.9 40,626 - GFF5417 0.40 -1.8 40,626 - GFF5417 0.40 +0.1 40,626 - GFF5417 0.40 +0.6 40,626 - GFF5417 0.40 -1.7 40,626 - GFF5417 0.40 +2.3 40,626 - GFF5417 0.40 +0.6 40,687 + GFF5417 0.51 +1.6 40,687 + GFF5417 0.51 -0.9 40,687 + GFF5417 0.51 +1.0 40,687 + GFF5417 0.51 -4.2 40,687 + GFF5417 0.51 +1.4 40,687 + GFF5417 0.51 +2.2 40,687 + GFF5417 0.51 +0.8 40,687 + GFF5417 0.51 +0.9 40,688 - GFF5417 0.51 +0.8 40,688 - GFF5417 0.51 +3.4 40,688 - GFF5417 0.51 -2.3 40,688 - GFF5417 0.51 +0.9 40,688 - GFF5417 0.51 -1.8 40,688 - GFF5417 0.51 +6.3 40,688 - GFF5417 0.51 +0.1 40,688 - GFF5417 0.51 -0.8 40,688 - GFF5417 0.51 -0.6 40,688 - GFF5417 0.51 +2.9 40,688 - GFF5417 0.51 -2.8 40,688 - GFF5417 0.51 -2.6 40,688 - GFF5417 0.51 -0.2 40,688 - GFF5417 0.51 +3.6 40,722 + GFF5417 0.57 +1.7 40,722 + GFF5417 0.57 -0.2 40,722 + GFF5417 0.57 -0.3 40,723 - GFF5417 0.57 -0.0 40,723 - GFF5417 0.57 +0.7 40,723 - GFF5417 0.57 +0.5 40,769 - GFF5417 0.65 +2.2 40,769 - GFF5417 0.65 -2.9 40,775 - GFF5417 0.66 +0.1 40,775 - GFF5417 0.66 -1.9 40,780 + GFF5417 0.67 +0.5 40,780 + GFF5417 0.67 +0.8 40,789 + GFF5417 0.69 +0.8 40,789 + GFF5417 0.69 +1.7 40,789 + GFF5417 0.69 -1.2 40,789 + GFF5417 0.69 -0.6 40,790 - GFF5417 0.69 -1.4 40,867 + GFF5417 0.83 +0.8 40,867 + GFF5417 0.83 +2.4 40,868 - GFF5417 0.83 -0.9 40,964 - -0.4 41,028 + -2.3 41,028 + +0.1 41,188 + +1.1 41,189 - +0.6 41,189 - -2.1 41,191 + -0.1 41,191 + +1.5 41,191 + -1.5 41,192 - -0.7 41,192 - +2.3 41,192 - -0.6 41,192 - +0.2 41,192 - +1.5 41,200 + +1.3 41,200 + +1.4 41,200 + -0.3 41,200 + -0.7 41,200 + -2.3 41,201 - +0.4 41,201 - +0.4 41,201 - +0.4 41,201 - +0.9 41,201 - +2.1 41,202 + +0.8 41,203 - +0.5 41,269 + -0.2 41,269 + +0.9 41,269 + +0.4 41,269 + +2.0 41,269 + +1.3 41,269 + +1.7 41,272 + +1.3 41,272 + -0.0 41,272 + +1.3 41,272 + -2.9 41,272 + +2.0 41,273 - -1.2 41,273 - -1.4 41,273 - -2.0 41,273 - +1.8 41,273 - +2.4 41,273 - +1.4 41,273 - -2.9 41,278 + -0.2 41,278 + +1.6 41,278 + -0.2 41,278 + +0.4 41,279 - +3.8 41,279 - -0.6 41,299 + +1.0 41,299 + +0.9 41,300 - -0.9 41,305 + +1.6 41,306 - -0.7 41,401 + +1.1 41,401 + -0.5 41,401 + +1.0 41,401 + +0.0 41,402 - -0.7 41,402 - +1.9 41,402 - +0.7 41,402 - +1.2 41,402 - -1.9 41,402 - -2.8 41,443 + +0.5 41,443 + +0.3 41,443 + +2.0 41,443 + +2.3 41,444 - +1.0 41,444 - +1.7 41,479 - +0.9 41,497 + GFF5418 0.10 -0.3 41,497 + GFF5418 0.10 +0.4 41,497 + GFF5418 0.10 -1.7 41,497 + GFF5418 0.10 +1.1 41,497 + GFF5418 0.10 +0.8 41,497 + GFF5418 0.10 +2.2 41,497 + GFF5418 0.10 -0.2 41,498 - GFF5418 0.10 +0.2 41,498 - GFF5418 0.10 +0.8 41,498 - GFF5418 0.10 +2.9 41,498 - GFF5418 0.10 +0.9 41,498 - GFF5418 0.10 +1.3 41,498 - GFF5418 0.10 +0.1 41,498 - GFF5418 0.10 -0.6 41,498 - GFF5418 0.10 +2.0 41,498 - GFF5418 0.10 +2.4 41,534 - GFF5418 0.11 +0.5 41,534 - GFF5418 0.11 +0.9 41,560 + GFF5418 0.12 -1.7 41,560 + GFF5418 0.12 +0.4 41,561 - GFF5418 0.12 +0.8 41,561 - GFF5418 0.12 +2.5 41,575 + GFF5418 0.12 -0.6 41,576 - GFF5418 0.12 +1.8 41,576 - GFF5418 0.12 +0.1 41,964 + GFF5418 0.20 -0.9 41,964 + GFF5418 0.20 +0.3 41,964 + GFF5418 0.20 +1.2 41,965 - GFF5418 0.20 +0.7 41,965 - GFF5418 0.20 +0.0 41,965 - GFF5418 0.20 -2.8 41,965 - GFF5418 0.20 +2.9
Or see this region's nucleotide sequence