Strain Fitness in Variovorax sp. SCN45 around GFF5328

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5327 and GFF5328 overlap by 4 nucleotidesGFF5328 and GFF5329 overlap by 4 nucleotidesGFF5329 and GFF5330 are separated by 16 nucleotides GFF5327 - Uncharacterized MFS-type transporter, at 204,680 to 205,936 GFF5327 GFF5328 - FIG00537720: hypothetical protein, at 205,933 to 206,508 GFF5328 GFF5329 - SAM-dependent methyltransferase, at 206,505 to 207,389 GFF5329 GFF5330 - no description, at 207,406 to 208,113 GFF5330 Position (kb) 205 206 207Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.009 kb on - strand, within GFF5327at 205.009 kb on - strand, within GFF5327at 205.009 kb on - strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.379 kb on + strand, within GFF5327at 205.379 kb on + strand, within GFF5327at 205.379 kb on + strand, within GFF5327at 205.379 kb on + strand, within GFF5327at 205.380 kb on - strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.425 kb on - strand, within GFF5327at 205.425 kb on - strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.650 kb on - strand, within GFF5327at 205.650 kb on - strand, within GFF5327at 205.650 kb on - strand, within GFF5327at 206.062 kb on + strand, within GFF5328at 206.062 kb on + strand, within GFF5328at 206.071 kb on + strand, within GFF5328at 206.071 kb on + strand, within GFF5328at 206.071 kb on + strand, within GFF5328at 206.072 kb on - strand, within GFF5328at 206.347 kb on + strand, within GFF5328at 206.348 kb on - strand, within GFF5328at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.772 kb on + strand, within GFF5329at 206.772 kb on + strand, within GFF5329at 206.772 kb on + strand, within GFF5329at 206.773 kb on - strand, within GFF5329at 206.773 kb on - strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.829 kb on + strand, within GFF5329at 206.829 kb on + strand, within GFF5329at 206.829 kb on + strand, within GFF5329at 206.829 kb on + strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 207.201 kb on + strand, within GFF5329at 207.201 kb on + strand, within GFF5329at 207.201 kb on + strand, within GFF5329at 207.202 kb on - strand, within GFF5329at 207.202 kb on - strand, within GFF5329at 207.202 kb on - strand, within GFF5329at 207.202 kb on - strand, within GFF5329at 207.219 kb on + strand, within GFF5329at 207.219 kb on + strand, within GFF5329at 207.220 kb on - strand, within GFF5329at 207.220 kb on - strand, within GFF5329at 207.288 kb on + strand, within GFF5329at 207.288 kb on + strand, within GFF5329at 207.288 kb on + strand, within GFF5329at 207.289 kb on - strand, within GFF5329at 207.289 kb on - strand, within GFF5329

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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205,008 + GFF5327 0.26 -1.6
205,008 + GFF5327 0.26 +1.0
205,008 + GFF5327 0.26 +0.3
205,008 + GFF5327 0.26 +0.1
205,008 + GFF5327 0.26 -1.4
205,008 + GFF5327 0.26 +0.8
205,009 - GFF5327 0.26 -3.1
205,009 - GFF5327 0.26 -0.7
205,009 - GFF5327 0.26 -2.2
205,130 + GFF5327 0.36 +2.7
205,130 + GFF5327 0.36 +0.5
205,130 + GFF5327 0.36 -2.3
205,130 + GFF5327 0.36 -0.3
205,130 + GFF5327 0.36 -0.2
205,130 + GFF5327 0.36 +0.6
205,130 + GFF5327 0.36 -0.7
205,130 + GFF5327 0.36 -1.6
205,130 + GFF5327 0.36 +0.5
205,130 + GFF5327 0.36 -1.2
205,130 + GFF5327 0.36 -0.0
205,130 + GFF5327 0.36 -2.2
205,130 + GFF5327 0.36 +0.3
205,130 + GFF5327 0.36 -1.4
205,130 + GFF5327 0.36 +0.1
205,130 + GFF5327 0.36 -0.5
205,130 + GFF5327 0.36 -1.9
205,130 + GFF5327 0.36 +0.1
205,130 + GFF5327 0.36 -0.7
205,130 + GFF5327 0.36 -2.9
205,130 + GFF5327 0.36 +0.3
205,130 + GFF5327 0.36 -0.1
205,130 + GFF5327 0.36 -0.2
205,130 + GFF5327 0.36 +1.8
205,130 + GFF5327 0.36 -0.9
205,130 + GFF5327 0.36 +2.4
205,130 + GFF5327 0.36 -1.6
205,131 - GFF5327 0.36 +2.1
205,131 - GFF5327 0.36 +1.2
205,131 - GFF5327 0.36 +1.2
205,131 - GFF5327 0.36 -0.1
205,131 - GFF5327 0.36 -0.2
205,131 - GFF5327 0.36 -1.6
205,131 - GFF5327 0.36 -0.1
205,131 - GFF5327 0.36 +0.5
205,131 - GFF5327 0.36 -1.2
205,131 - GFF5327 0.36 +1.3
205,131 - GFF5327 0.36 +0.5
205,131 - GFF5327 0.36 +0.1
205,131 - GFF5327 0.36 +1.0
205,131 - GFF5327 0.36 +2.1
205,131 - GFF5327 0.36 -3.3
205,131 - GFF5327 0.36 +0.6
205,131 - GFF5327 0.36 -0.5
205,131 - GFF5327 0.36 +0.0
205,131 - GFF5327 0.36 -0.7
205,131 - GFF5327 0.36 +0.4
205,131 - GFF5327 0.36 -0.9
205,379 + GFF5327 0.56 -0.5
205,379 + GFF5327 0.56 -0.3
205,379 + GFF5327 0.56 +0.5
205,379 + GFF5327 0.56 +3.7
205,380 - GFF5327 0.56 -0.5
205,424 + GFF5327 0.59 -3.3
205,424 + GFF5327 0.59 -2.0
205,424 + GFF5327 0.59 -2.2
205,424 + GFF5327 0.59 +0.8
205,424 + GFF5327 0.59 -2.2
205,424 + GFF5327 0.59 -2.0
205,424 + GFF5327 0.59 -1.7
205,424 + GFF5327 0.59 +0.5
205,424 + GFF5327 0.59 -1.1
205,424 + GFF5327 0.59 +0.1
205,425 - GFF5327 0.59 -2.7
205,425 - GFF5327 0.59 +1.1
205,649 + GFF5327 0.77 -0.2
205,649 + GFF5327 0.77 +0.8
205,649 + GFF5327 0.77 -0.5
205,649 + GFF5327 0.77 -0.1
205,649 + GFF5327 0.77 -0.3
205,650 - GFF5327 0.77 -1.1
205,650 - GFF5327 0.77 -1.5
205,650 - GFF5327 0.77 -1.8
206,062 + GFF5328 0.22 -0.7
206,062 + GFF5328 0.22 +0.1
206,071 + GFF5328 0.24 -0.5
206,071 + GFF5328 0.24 +1.3
206,071 + GFF5328 0.24 -0.0
206,072 - GFF5328 0.24 +0.3
206,347 + GFF5328 0.72 +1.0
206,348 - GFF5328 0.72 -0.2
206,679 + GFF5329 0.20 +1.7
206,679 + GFF5329 0.20 -2.3
206,679 + GFF5329 0.20 -0.2
206,679 + GFF5329 0.20 -2.1
206,679 + GFF5329 0.20 -1.0
206,679 + GFF5329 0.20 +1.0
206,679 + GFF5329 0.20 +1.8
206,679 + GFF5329 0.20 -2.4
206,679 + GFF5329 0.20 -0.6
206,679 + GFF5329 0.20 -1.7
206,679 + GFF5329 0.20 +0.3
206,679 + GFF5329 0.20 -2.4
206,679 + GFF5329 0.20 +1.1
206,679 + GFF5329 0.20 -0.2
206,680 - GFF5329 0.20 -1.6
206,680 - GFF5329 0.20 -2.5
206,680 - GFF5329 0.20 -3.0
206,680 - GFF5329 0.20 +0.5
206,680 - GFF5329 0.20 -1.2
206,680 - GFF5329 0.20 -0.4
206,680 - GFF5329 0.20 -0.5
206,680 - GFF5329 0.20 -0.8
206,680 - GFF5329 0.20 -1.4
206,680 - GFF5329 0.20 +0.1
206,680 - GFF5329 0.20 +0.3
206,680 - GFF5329 0.20 -1.5
206,772 + GFF5329 0.30 +0.5
206,772 + GFF5329 0.30 +0.1
206,772 + GFF5329 0.30 -0.0
206,773 - GFF5329 0.30 -3.1
206,773 - GFF5329 0.30 +0.9
206,790 + GFF5329 0.32 +1.3
206,790 + GFF5329 0.32 -3.9
206,790 + GFF5329 0.32 +0.5
206,790 + GFF5329 0.32 +0.1
206,790 + GFF5329 0.32 +2.6
206,790 + GFF5329 0.32 +0.0
206,790 + GFF5329 0.32 -1.2
206,790 + GFF5329 0.32 -1.4
206,790 + GFF5329 0.32 -0.2
206,790 + GFF5329 0.32 -0.7
206,790 + GFF5329 0.32 +0.1
206,790 + GFF5329 0.32 -0.5
206,790 + GFF5329 0.32 -0.5
206,790 + GFF5329 0.32 -2.2
206,790 + GFF5329 0.32 -1.2
206,790 + GFF5329 0.32 +1.4
206,790 + GFF5329 0.32 -1.1
206,790 + GFF5329 0.32 +1.7
206,790 + GFF5329 0.32 -0.3
206,790 + GFF5329 0.32 +0.7
206,791 - GFF5329 0.32 -1.7
206,791 - GFF5329 0.32 -1.2
206,791 - GFF5329 0.32 +0.0
206,791 - GFF5329 0.32 -0.1
206,791 - GFF5329 0.32 +0.7
206,791 - GFF5329 0.32 -0.2
206,791 - GFF5329 0.32 +2.1
206,791 - GFF5329 0.32 -1.6
206,791 - GFF5329 0.32 -1.0
206,791 - GFF5329 0.32 +0.1
206,791 - GFF5329 0.32 -2.3
206,791 - GFF5329 0.32 +1.2
206,791 - GFF5329 0.32 -0.0
206,791 - GFF5329 0.32 +1.1
206,791 - GFF5329 0.32 -1.1
206,791 - GFF5329 0.32 -0.5
206,791 - GFF5329 0.32 +0.8
206,791 - GFF5329 0.32 -1.6
206,791 - GFF5329 0.32 -1.6
206,791 - GFF5329 0.32 +1.1
206,791 - GFF5329 0.32 -2.9
206,791 - GFF5329 0.32 +3.3
206,791 - GFF5329 0.32 +1.1
206,791 - GFF5329 0.32 -1.6
206,829 + GFF5329 0.37 -1.5
206,829 + GFF5329 0.37 -1.6
206,829 + GFF5329 0.37 +0.8
206,829 + GFF5329 0.37 -0.5
206,830 - GFF5329 0.37 +2.0
206,830 - GFF5329 0.37 -1.2
206,830 - GFF5329 0.37 -1.4
206,830 - GFF5329 0.37 +2.2
206,830 - GFF5329 0.37 -1.9
206,830 - GFF5329 0.37 -0.7
206,830 - GFF5329 0.37 -1.8
207,201 + GFF5329 0.79 -1.6
207,201 + GFF5329 0.79 +0.5
207,201 + GFF5329 0.79 -2.9
207,202 - GFF5329 0.79 +1.1
207,202 - GFF5329 0.79 +0.1
207,202 - GFF5329 0.79 +0.3
207,202 - GFF5329 0.79 -0.2
207,219 + GFF5329 0.81 -1.5
207,219 + GFF5329 0.81 -2.8
207,220 - GFF5329 0.81 -0.2
207,220 - GFF5329 0.81 -0.6
207,288 + GFF5329 0.88 +0.5
207,288 + GFF5329 0.88 -0.9
207,288 + GFF5329 0.88 -0.1
207,289 - GFF5329 0.89 -2.2
207,289 - GFF5329 0.89 -0.7

Or see this region's nucleotide sequence