Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5263 and GFF5264 overlap by 4 nucleotides GFF5264 and GFF5265 are separated by 620 nucleotides
GFF5263 - Ferric iron ABC transporter, permease protein, at 128,991 to 131,264
GFF5263
GFF5264 - Spermidine/putrescine import ABC transporter ATP-binding protein PotA (TC 3.A.1.11.1), at 131,261 to 132,310
GFF5264
GFF5265 - Outer membrane lipoprotein, at 132,931 to 133,599
GFF5265
Position (kb) 131
132
133 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 130.350 kb on + strand, within GFF5263 at 130.351 kb on - strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.464 kb on + strand, within GFF5263 at 130.464 kb on + strand, within GFF5263 at 130.465 kb on - strand, within GFF5263 at 130.512 kb on + strand, within GFF5263 at 130.513 kb on - strand, within GFF5263 at 130.513 kb on - strand, within GFF5263 at 130.513 kb on - strand, within GFF5263 at 130.767 kb on + strand, within GFF5263 at 130.767 kb on + strand, within GFF5263 at 130.767 kb on + strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 131.001 kb on + strand, within GFF5263 at 131.002 kb on - strand, within GFF5263 at 131.002 kb on - strand, within GFF5263 at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.109 kb on + strand at 131.127 kb on + strand at 131.127 kb on + strand at 131.284 kb on + strand at 131.285 kb on - strand at 131.285 kb on - strand at 131.285 kb on - strand at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.523 kb on - strand, within GFF5264 at 131.523 kb on - strand, within GFF5264 at 131.523 kb on - strand, within GFF5264 at 131.523 kb on - strand, within GFF5264 at 131.523 kb on - strand, within GFF5264 at 131.565 kb on - strand, within GFF5264 at 131.837 kb on + strand, within GFF5264 at 131.837 kb on + strand, within GFF5264 at 131.837 kb on + strand, within GFF5264 at 131.838 kb on - strand, within GFF5264 at 131.838 kb on - strand, within GFF5264 at 131.838 kb on - strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.937 kb on - strand, within GFF5264 at 131.937 kb on - strand, within GFF5264 at 131.937 kb on - strand, within GFF5264 at 132.161 kb on + strand, within GFF5264 at 132.162 kb on - strand, within GFF5264 at 132.176 kb on + strand, within GFF5264 at 132.177 kb on - strand, within GFF5264 at 132.182 kb on + strand, within GFF5264 at 132.182 kb on + strand, within GFF5264 at 132.183 kb on - strand, within GFF5264 at 132.183 kb on - strand, within GFF5264 at 132.183 kb on - strand, within GFF5264 at 132.183 kb on - strand, within GFF5264 at 132.381 kb on + strand at 132.656 kb on + strand at 132.656 kb on + strand at 132.656 kb on + strand at 132.656 kb on + strand at 132.656 kb on + strand at 132.656 kb on + strand at 132.656 kb on + strand at 132.657 kb on - strand at 132.657 kb on - strand at 132.659 kb on + strand at 132.659 kb on + strand at 132.659 kb on + strand at 132.659 kb on + strand at 132.659 kb on + strand at 132.659 kb on + strand at 132.659 kb on + strand at 132.659 kb on + strand at 132.660 kb on - strand at 132.660 kb on - strand at 132.660 kb on - strand at 132.660 kb on - strand at 132.660 kb on - strand at 132.660 kb on - strand at 132.660 kb on - strand at 132.660 kb on - strand at 132.782 kb on + strand at 132.782 kb on + strand at 132.782 kb on + strand at 132.782 kb on + strand at 132.782 kb on + strand at 132.782 kb on + strand at 132.782 kb on + strand at 132.783 kb on - strand at 132.783 kb on - strand at 132.783 kb on - strand at 132.932 kb on + strand at 132.946 kb on + strand at 132.947 kb on - strand at 132.947 kb on - strand at 132.947 kb on - strand at 132.947 kb on - strand at 132.947 kb on - strand at 132.947 kb on - strand at 132.947 kb on - strand at 132.984 kb on - strand at 133.082 kb on + strand, within GFF5265 at 133.082 kb on + strand, within GFF5265 at 133.109 kb on + strand, within GFF5265 at 133.109 kb on + strand, within GFF5265 at 133.109 kb on + strand, within GFF5265 at 133.292 kb on + strand, within GFF5265 at 133.293 kb on - strand, within GFF5265 at 133.293 kb on - strand, within GFF5265 at 133.293 kb on - strand, within GFF5265
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 130,350 + GFF5263 0.60 -0.1 130,351 - GFF5263 0.60 -2.0 130,422 + GFF5263 0.63 +0.8 130,422 + GFF5263 0.63 -1.5 130,422 + GFF5263 0.63 +0.1 130,422 + GFF5263 0.63 -3.2 130,422 + GFF5263 0.63 +0.1 130,422 + GFF5263 0.63 -1.9 130,422 + GFF5263 0.63 -3.3 130,423 - GFF5263 0.63 +0.9 130,423 - GFF5263 0.63 -0.1 130,423 - GFF5263 0.63 +0.1 130,423 - GFF5263 0.63 -3.1 130,423 - GFF5263 0.63 -0.1 130,423 - GFF5263 0.63 +0.9 130,423 - GFF5263 0.63 +1.6 130,423 - GFF5263 0.63 +0.8 130,423 - GFF5263 0.63 -2.8 130,464 + GFF5263 0.65 -1.9 130,464 + GFF5263 0.65 +2.2 130,465 - GFF5263 0.65 -0.4 130,512 + GFF5263 0.67 -0.2 130,513 - GFF5263 0.67 +0.6 130,513 - GFF5263 0.67 -0.1 130,513 - GFF5263 0.67 +2.1 130,767 + GFF5263 0.78 -0.0 130,767 + GFF5263 0.78 -3.5 130,767 + GFF5263 0.78 +0.8 130,768 - GFF5263 0.78 -0.3 130,768 - GFF5263 0.78 -0.9 130,768 - GFF5263 0.78 -0.9 130,768 - GFF5263 0.78 -0.4 130,768 - GFF5263 0.78 -3.0 130,768 - GFF5263 0.78 -0.0 130,768 - GFF5263 0.78 -0.2 130,768 - GFF5263 0.78 +1.1 131,001 + GFF5263 0.88 +1.3 131,002 - GFF5263 0.88 +0.5 131,002 - GFF5263 0.88 -0.2 131,079 + -1.2 131,079 + -1.7 131,079 + +1.4 131,079 + -0.4 131,079 + -1.6 131,079 + +1.7 131,079 + -1.5 131,079 + +0.5 131,079 + -0.8 131,079 + +1.5 131,079 + -0.5 131,080 - -1.4 131,080 - -1.2 131,080 - -0.0 131,080 - -0.2 131,080 - -0.8 131,080 - -2.1 131,080 - -1.1 131,080 - -0.9 131,080 - +0.9 131,080 - -0.0 131,109 + +0.3 131,127 + -1.2 131,127 + -0.6 131,284 + +1.8 131,285 - +0.1 131,285 - -0.5 131,285 - -1.8 131,522 + GFF5264 0.25 +0.7 131,522 + GFF5264 0.25 -0.8 131,522 + GFF5264 0.25 -1.4 131,522 + GFF5264 0.25 +0.2 131,522 + GFF5264 0.25 -1.1 131,522 + GFF5264 0.25 -0.9 131,522 + GFF5264 0.25 -2.0 131,522 + GFF5264 0.25 -0.4 131,522 + GFF5264 0.25 -2.1 131,522 + GFF5264 0.25 -0.2 131,522 + GFF5264 0.25 -1.6 131,522 + GFF5264 0.25 +0.5 131,522 + GFF5264 0.25 -0.6 131,523 - GFF5264 0.25 +0.1 131,523 - GFF5264 0.25 -1.4 131,523 - GFF5264 0.25 -2.9 131,523 - GFF5264 0.25 +0.0 131,523 - GFF5264 0.25 -3.2 131,565 - GFF5264 0.29 -0.5 131,837 + GFF5264 0.55 -1.2 131,837 + GFF5264 0.55 +0.2 131,837 + GFF5264 0.55 -0.2 131,838 - GFF5264 0.55 +0.7 131,838 - GFF5264 0.55 -3.8 131,838 - GFF5264 0.55 -0.4 131,936 + GFF5264 0.64 -0.5 131,936 + GFF5264 0.64 +0.5 131,936 + GFF5264 0.64 -0.9 131,936 + GFF5264 0.64 -2.7 131,936 + GFF5264 0.64 +0.0 131,936 + GFF5264 0.64 -1.2 131,936 + GFF5264 0.64 -1.1 131,936 + GFF5264 0.64 +0.5 131,937 - GFF5264 0.64 -2.5 131,937 - GFF5264 0.64 +1.9 131,937 - GFF5264 0.64 -0.5 132,161 + GFF5264 0.86 +0.3 132,162 - GFF5264 0.86 +1.1 132,176 + GFF5264 0.87 -1.6 132,177 - GFF5264 0.87 +1.1 132,182 + GFF5264 0.88 -0.5 132,182 + GFF5264 0.88 -1.4 132,183 - GFF5264 0.88 +2.2 132,183 - GFF5264 0.88 -2.1 132,183 - GFF5264 0.88 -0.3 132,183 - GFF5264 0.88 +0.1 132,381 + -2.8 132,656 + -0.3 132,656 + +0.7 132,656 + -0.5 132,656 + -0.7 132,656 + +2.1 132,656 + +0.2 132,656 + +0.8 132,657 - -1.9 132,657 - +0.3 132,659 + -0.6 132,659 + -0.5 132,659 + -0.4 132,659 + -2.1 132,659 + +0.0 132,659 + -1.9 132,659 + +1.3 132,659 + -0.2 132,660 - -0.9 132,660 - +0.9 132,660 - +1.8 132,660 - +1.8 132,660 - -1.4 132,660 - +1.1 132,660 - -0.7 132,660 - -1.5 132,782 + +1.4 132,782 + -0.9 132,782 + +0.7 132,782 + -1.2 132,782 + -0.7 132,782 + +0.8 132,782 + -0.7 132,783 - +2.2 132,783 - -0.7 132,783 - -0.2 132,932 + -0.8 132,946 + -2.1 132,947 - -1.8 132,947 - -0.2 132,947 - -0.2 132,947 - +2.4 132,947 - -0.4 132,947 - +0.6 132,947 - -0.2 132,984 - -1.6 133,082 + GFF5265 0.23 -2.5 133,082 + GFF5265 0.23 -0.8 133,109 + GFF5265 0.27 -0.5 133,109 + GFF5265 0.27 -0.2 133,109 + GFF5265 0.27 -1.5 133,292 + GFF5265 0.54 -3.0 133,293 - GFF5265 0.54 -1.7 133,293 - GFF5265 0.54 -2.0 133,293 - GFF5265 0.54 -1.1
Or see this region's nucleotide sequence