Strain Fitness in Variovorax sp. SCN45 around GFF5253

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
116,529	+				-2.7
116,529	+				-3.3
116,529	+				-1.9
116,529	+				-0.6
116,529	+				-1.9
116,530	-				-0.7
116,530	-				+1.8
116,592	+				+1.3
116,592	+				-1.1
116,592	+				-1.2
116,592	+				-0.8
116,592	+				-2.3
116,600	+				+1.5
116,600	+				+2.1
116,600	+				+1.1
116,600	+				-1.9
116,600	+				+0.4
116,600	+				-1.4
116,600	+				+1.2
116,600	+				+2.5
116,600	+				+0.7
116,600	+				-1.0
116,601	-				-0.3
116,601	-				-1.1
116,601	-				-4.5
116,601	-				-0.5
116,601	-				-1.5
116,601	-				-1.2
116,601	-				-2.2
116,601	-				-3.7
116,867	+		GFF5252	0.36	+1.1
116,867	+		GFF5252	0.36	-0.0
116,867	+		GFF5252	0.36	-0.5
116,867	+		GFF5252	0.36	+1.3
116,867	+		GFF5252	0.36	-0.4
116,867	+		GFF5252	0.36	-1.4
116,868	-		GFF5252	0.36	-0.3
116,868	-		GFF5252	0.36	-3.1
117,170	+		GFF5252	0.67	-0.2
117,170	+		GFF5252	0.67	-0.7
117,170	+		GFF5252	0.67	+0.8
117,170	+		GFF5252	0.67	+2.5
117,170	+		GFF5252	0.67	+3.4
117,170	+		GFF5252	0.67	+0.3
117,170	+		GFF5252	0.67	+1.3
117,170	+		GFF5252	0.67	+0.3
117,171	-		GFF5252	0.67	+0.4
117,171	-		GFF5252	0.67	-1.2
117,171	-		GFF5252	0.67	+0.4
117,171	-		GFF5252	0.67	+0.9
117,171	-		GFF5252	0.67	-1.4
117,171	-		GFF5252	0.67	+1.3
117,171	-		GFF5252	0.67	-0.1
117,171	-		GFF5252	0.67	+0.9
117,171	-		GFF5252	0.67	+0.2
117,171	-		GFF5252	0.67	-2.5
117,389	+		GFF5252	0.89	+0.4
117,389	+		GFF5252	0.89	-2.2
117,390	-		GFF5252	0.89	-0.7
117,414	-				-3.0
117,446	+				-0.2
117,446	+				+0.2
117,446	+				-0.7
117,446	+				-1.1
117,446	+				+1.6
117,446	+				-1.2
117,446	+				-0.5
117,446	+				-1.7
117,446	+				-0.0
117,447	-				-1.1
117,447	-				+0.2
117,447	-				-0.4
117,447	-				+1.8
117,447	-				-1.8
117,447	-				+1.3
117,447	-				-1.9
117,447	-				+0.2
117,571	-				+0.5
117,636	+		GFF5253	0.11	+0.4
117,636	+		GFF5253	0.11	+0.3
117,636	+		GFF5253	0.11	-1.8
117,636	+		GFF5253	0.11	-1.8
117,636	+		GFF5253	0.11	-2.8
117,636	+		GFF5253	0.11	-2.4
117,636	+		GFF5253	0.11	-2.5
117,636	+		GFF5253	0.11	+0.5
117,636	+		GFF5253	0.11	-1.1
117,636	+		GFF5253	0.11	-0.3
117,637	-		GFF5253	0.11	-1.0
117,637	-		GFF5253	0.11	-1.2
117,637	-		GFF5253	0.11	+1.2
117,637	-		GFF5253	0.11	-0.8
117,637	-		GFF5253	0.11	-2.1
117,637	-		GFF5253	0.11	+0.1
117,637	-		GFF5253	0.11	-2.1
117,895	-		GFF5253	0.31	-0.2
118,084	-		GFF5253	0.46	-2.7
118,149	+		GFF5253	0.51	-0.6
118,150	-		GFF5253	0.51	+1.7
118,425	+		GFF5253	0.73	-1.4
118,425	+		GFF5253	0.73	-0.7
118,425	+		GFF5253	0.73	-0.2
118,425	+		GFF5253	0.73	-0.9
118,425	+		GFF5253	0.73	+0.8
118,426	-		GFF5253	0.73	-1.4
118,426	-		GFF5253	0.73	-0.7
118,426	-		GFF5253	0.73	-1.2
118,426	-		GFF5253	0.73	+3.5
118,426	-		GFF5253	0.73	-0.5
118,426	-		GFF5253	0.73	-0.1
118,437	+		GFF5253	0.74	-1.4
118,437	+		GFF5253	0.74	+0.8
118,437	+		GFF5253	0.74	+1.3
118,438	-		GFF5253	0.74	-1.7
118,438	-		GFF5253	0.74	-1.2
118,587	+		GFF5253	0.86	+0.9
118,588	-		GFF5253	0.86	-2.3
118,588	-		GFF5253	0.86	-0.7
118,641	+		GFF5253	0.90	+0.9
118,911	-				-2.8
118,969	+		GFF5254	0.11	+2.8
118,969	+		GFF5254	0.11	+0.7
118,969	+		GFF5254	0.11	-0.5
118,970	-		GFF5254	0.11	-0.5
118,970	-		GFF5254	0.11	+0.0
118,970	-		GFF5254	0.11	+0.5
118,970	-		GFF5254	0.11	-1.7
119,339	-		GFF5254	0.34	-1.0
119,434	+		GFF5254	0.40	-2.9
119,434	+		GFF5254	0.40	+0.6
119,434	+		GFF5254	0.40	+2.1
119,434	+		GFF5254	0.40	-0.2
119,434	+		GFF5254	0.40	+1.2
119,435	-		GFF5254	0.40	-4.0
119,659	+		GFF5254	0.54	-1.7
119,659	+		GFF5254	0.54	+1.7
119,660	-		GFF5254	0.54	-0.9
119,660	-		GFF5254	0.54	+0.8
119,716	+		GFF5254	0.58	+0.8
119,716	+		GFF5254	0.58	+1.3
119,717	-		GFF5254	0.58	+0.5
119,717	-		GFF5254	0.58	+0.6
119,717	-		GFF5254	0.58	+0.1
119,717	-		GFF5254	0.58	-2.1