Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5196 and GFF5197 are separated by 13 nucleotides GFF5197 and GFF5198 are separated by 139 nucleotides
GFF5196 - L-arabinose ABC transporter, permease protein AraH, at 55,308 to 56,522
GFF5196
GFF5197 - Galactofuranose ABC transporter, ATP-binding protein, at 56,536 to 58,050
GFF5197
GFF5198 - ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose), at 58,190 to 59,224
GFF5198
Position (kb) 56
57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 55.633 kb on - strand, within GFF5196 at 55.983 kb on + strand, within GFF5196 at 56.041 kb on - strand, within GFF5196 at 56.055 kb on + strand, within GFF5196 at 56.148 kb on + strand, within GFF5196 at 56.411 kb on - strand at 56.505 kb on + strand at 56.506 kb on - strand at 56.594 kb on + strand at 56.626 kb on + strand at 56.978 kb on - strand, within GFF5197 at 56.978 kb on - strand, within GFF5197 at 57.166 kb on + strand, within GFF5197 at 57.167 kb on - strand, within GFF5197 at 57.167 kb on - strand, within GFF5197 at 57.167 kb on - strand, within GFF5197 at 57.191 kb on + strand, within GFF5197 at 58.027 kb on + strand at 58.028 kb on - strand at 58.028 kb on - strand at 58.028 kb on - strand at 58.189 kb on + strand at 58.189 kb on + strand at 58.189 kb on + strand at 58.189 kb on + strand at 58.190 kb on - strand at 58.190 kb on - strand at 58.190 kb on - strand at 58.431 kb on + strand, within GFF5198 at 58.670 kb on + strand, within GFF5198 at 58.671 kb on - strand, within GFF5198 at 58.674 kb on - strand, within GFF5198 at 58.674 kb on - strand, within GFF5198 at 58.674 kb on - strand, within GFF5198 at 58.871 kb on + strand, within GFF5198 at 58.872 kb on - strand, within GFF5198
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 55,633 - GFF5196 0.27 -0.2 55,983 + GFF5196 0.56 -3.0 56,041 - GFF5196 0.60 +0.6 56,055 + GFF5196 0.61 -2.9 56,148 + GFF5196 0.69 -3.5 56,411 - +0.1 56,505 + +0.1 56,506 - +0.1 56,594 + +2.3 56,626 + +2.4 56,978 - GFF5197 0.29 -1.6 56,978 - GFF5197 0.29 +0.5 57,166 + GFF5197 0.42 -3.2 57,167 - GFF5197 0.42 -0.2 57,167 - GFF5197 0.42 -0.4 57,167 - GFF5197 0.42 +0.5 57,191 + GFF5197 0.43 -1.2 58,027 + -0.2 58,028 - +1.3 58,028 - -1.8 58,028 - +0.6 58,189 + +1.4 58,189 + -0.2 58,189 + -1.7 58,189 + -2.5 58,190 - -1.2 58,190 - -0.9 58,190 - -0.7 58,431 + GFF5198 0.23 +0.1 58,670 + GFF5198 0.46 +0.9 58,671 - GFF5198 0.46 -0.9 58,674 - GFF5198 0.47 -2.6 58,674 - GFF5198 0.47 +1.1 58,674 - GFF5198 0.47 -2.2 58,871 + GFF5198 0.66 -2.2 58,872 - GFF5198 0.66 -0.5
Or see this region's nucleotide sequence