Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5195 and GFF5196 overlap by 14 nucleotides GFF5196 and GFF5197 are separated by 13 nucleotides
GFF5195 - L-arabinose ABC transporter, ATP-binding protein AraG, at 53,750 to 55,321
GFF5195
GFF5196 - L-arabinose ABC transporter, permease protein AraH, at 55,308 to 56,522
GFF5196
GFF5197 - Galactofuranose ABC transporter, ATP-binding protein, at 56,536 to 58,050
GFF5197
Position (kb) 55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 55.106 kb on + strand, within GFF5195 at 55.107 kb on - strand, within GFF5195 at 55.115 kb on + strand, within GFF5195 at 55.116 kb on - strand, within GFF5195 at 55.209 kb on - strand at 55.209 kb on - strand at 55.515 kb on + strand, within GFF5196 at 55.515 kb on + strand, within GFF5196 at 55.515 kb on + strand, within GFF5196 at 55.516 kb on - strand, within GFF5196 at 55.633 kb on - strand, within GFF5196 at 55.983 kb on + strand, within GFF5196 at 56.041 kb on - strand, within GFF5196 at 56.055 kb on + strand, within GFF5196 at 56.148 kb on + strand, within GFF5196 at 56.411 kb on - strand at 56.505 kb on + strand at 56.506 kb on - strand at 56.594 kb on + strand at 56.626 kb on + strand at 56.978 kb on - strand, within GFF5197 at 56.978 kb on - strand, within GFF5197 at 57.166 kb on + strand, within GFF5197 at 57.167 kb on - strand, within GFF5197 at 57.167 kb on - strand, within GFF5197 at 57.167 kb on - strand, within GFF5197 at 57.191 kb on + strand, within GFF5197
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 55,106 + GFF5195 0.86 -1.8 55,107 - GFF5195 0.86 -0.3 55,115 + GFF5195 0.87 +0.8 55,116 - GFF5195 0.87 -1.6 55,209 - -1.2 55,209 - -0.6 55,515 + GFF5196 0.17 -2.1 55,515 + GFF5196 0.17 -0.2 55,515 + GFF5196 0.17 +0.3 55,516 - GFF5196 0.17 -0.9 55,633 - GFF5196 0.27 -0.2 55,983 + GFF5196 0.56 -3.0 56,041 - GFF5196 0.60 +0.6 56,055 + GFF5196 0.61 -2.9 56,148 + GFF5196 0.69 -3.5 56,411 - +0.1 56,505 + +0.1 56,506 - +0.1 56,594 + +2.3 56,626 + +2.4 56,978 - GFF5197 0.29 -1.6 56,978 - GFF5197 0.29 +0.5 57,166 + GFF5197 0.42 -3.2 57,167 - GFF5197 0.42 -0.2 57,167 - GFF5197 0.42 -0.4 57,167 - GFF5197 0.42 +0.5 57,191 + GFF5197 0.43 -1.2
Or see this region's nucleotide sequence