Strain Fitness in Variovorax sp. SCN45 around GFF5185

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5185 and GFF5186 overlap by 4 nucleotidesGFF5186 and GFF5187 are separated by 27 nucleotides GFF5185 - FIG00732904: hypothetical protein, at 38,479 to 43,239 GFF5185 GFF5186 - hypothetical protein, at 43,236 to 44,177 GFF5186 GFF5187 - Aldose 1-epimerase (EC 5.1.3.3), at 44,205 to 45,284 GFF5187 Position (kb) 38 39 40 41 42 43 44Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 37.534 kb on - strandat 37.534 kb on - strandat 37.681 kb on + strandat 37.681 kb on + strandat 37.719 kb on + strandat 37.720 kb on - strandat 37.720 kb on - strandat 37.720 kb on - strandat 37.790 kb on + strandat 37.905 kb on + strandat 37.931 kb on - strandat 38.053 kb on + strandat 38.149 kb on + strandat 38.150 kb on - strandat 38.150 kb on - strandat 38.150 kb on - strandat 38.152 kb on + strandat 38.159 kb on + strandat 38.160 kb on - strandat 38.265 kb on + strandat 38.265 kb on + strandat 38.266 kb on - strandat 38.307 kb on + strandat 38.308 kb on - strandat 38.815 kb on + strandat 38.816 kb on - strandat 38.816 kb on - strandat 38.816 kb on - strandat 38.896 kb on + strandat 38.896 kb on + strandat 38.896 kb on + strandat 38.896 kb on + strandat 38.896 kb on + strandat 38.897 kb on - strandat 38.897 kb on - strandat 39.031 kb on + strand, within GFF5185at 39.031 kb on + strand, within GFF5185at 39.031 kb on + strand, within GFF5185at 39.031 kb on + strand, within GFF5185at 39.032 kb on - strand, within GFF5185at 39.032 kb on - strand, within GFF5185at 39.032 kb on - strand, within GFF5185at 39.148 kb on + strand, within GFF5185at 39.148 kb on + strand, within GFF5185at 39.148 kb on + strand, within GFF5185at 39.148 kb on + strand, within GFF5185at 39.149 kb on - strand, within GFF5185at 39.187 kb on + strand, within GFF5185at 39.187 kb on + strand, within GFF5185at 39.188 kb on - strand, within GFF5185at 39.188 kb on - strand, within GFF5185at 39.188 kb on - strand, within GFF5185at 39.226 kb on + strand, within GFF5185at 39.226 kb on + strand, within GFF5185at 39.226 kb on + strand, within GFF5185at 39.226 kb on + strand, within GFF5185at 39.226 kb on + strand, within GFF5185at 39.227 kb on - strand, within GFF5185at 39.256 kb on + strand, within GFF5185at 39.257 kb on - strand, within GFF5185at 39.257 kb on - strand, within GFF5185at 39.257 kb on - strand, within GFF5185at 39.385 kb on + strand, within GFF5185at 39.454 kb on + strand, within GFF5185at 39.454 kb on + strand, within GFF5185at 39.454 kb on + strand, within GFF5185at 39.454 kb on + strand, within GFF5185at 39.454 kb on + strand, within GFF5185at 39.455 kb on - strand, within GFF5185at 39.455 kb on - strand, within GFF5185at 39.455 kb on - strand, within GFF5185at 39.455 kb on - strand, within GFF5185at 39.455 kb on - strand, within GFF5185at 39.604 kb on + strand, within GFF5185at 39.604 kb on + strand, within GFF5185at 39.605 kb on - strand, within GFF5185at 39.605 kb on - strand, within GFF5185at 39.605 kb on - strand, within GFF5185at 39.605 kb on - strand, within GFF5185at 39.607 kb on + strand, within GFF5185at 39.608 kb on - strand, within GFF5185at 39.608 kb on - strand, within GFF5185at 39.644 kb on - strand, within GFF5185at 39.745 kb on + strand, within GFF5185at 39.787 kb on + strand, within GFF5185at 39.976 kb on + strand, within GFF5185at 39.977 kb on - strand, within GFF5185at 39.977 kb on - strand, within GFF5185at 39.977 kb on - strand, within GFF5185at 40.111 kb on + strand, within GFF5185at 40.111 kb on + strand, within GFF5185at 40.111 kb on + strand, within GFF5185at 40.112 kb on - strand, within GFF5185at 40.124 kb on - strand, within GFF5185at 40.124 kb on - strand, within GFF5185at 40.124 kb on - strand, within GFF5185at 40.132 kb on + strand, within GFF5185at 40.132 kb on + strand, within GFF5185at 40.381 kb on + strand, within GFF5185at 40.382 kb on - strand, within GFF5185at 40.382 kb on - strand, within GFF5185at 40.382 kb on - strand, within GFF5185at 40.382 kb on - strand, within GFF5185at 40.384 kb on + strand, within GFF5185at 40.384 kb on + strand, within GFF5185at 40.384 kb on + strand, within GFF5185at 40.385 kb on - strand, within GFF5185at 40.385 kb on - strand, within GFF5185at 40.472 kb on - strand, within GFF5185at 40.888 kb on + strand, within GFF5185at 41.545 kb on + strand, within GFF5185at 41.926 kb on + strand, within GFF5185at 41.927 kb on - strand, within GFF5185at 41.953 kb on + strand, within GFF5185at 41.954 kb on - strand, within GFF5185at 42.133 kb on + strand, within GFF5185at 42.134 kb on - strand, within GFF5185at 42.244 kb on + strand, within GFF5185at 42.244 kb on + strand, within GFF5185at 42.245 kb on - strand, within GFF5185at 42.245 kb on - strand, within GFF5185at 42.245 kb on - strand, within GFF5185at 42.245 kb on - strand, within GFF5185at 42.445 kb on + strand, within GFF5185at 42.446 kb on - strand, within GFF5185at 42.667 kb on + strand, within GFF5185at 43.138 kb on + strandat 43.235 kb on + strandat 43.235 kb on + strandat 43.235 kb on + strandat 43.235 kb on + strandat 43.236 kb on - strandat 43.236 kb on - strandat 43.236 kb on - strandat 43.236 kb on - strandat 43.236 kb on - strandat 43.236 kb on - strandat 43.236 kb on - strandat 43.419 kb on + strand, within GFF5186at 43.419 kb on + strand, within GFF5186at 43.420 kb on - strand, within GFF5186at 43.650 kb on + strand, within GFF5186at 43.650 kb on + strand, within GFF5186at 43.651 kb on - strand, within GFF5186at 43.651 kb on - strand, within GFF5186at 43.651 kb on - strand, within GFF5186at 43.929 kb on + strand, within GFF5186at 43.929 kb on + strand, within GFF5186at 43.930 kb on - strand, within GFF5186at 43.930 kb on - strand, within GFF5186at 44.106 kb on + strandat 44.200 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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37,534 - +0.2
37,534 - +0.5
37,681 + -3.3
37,681 + -1.5
37,719 + +3.4
37,720 - -1.8
37,720 - +1.8
37,720 - +0.4
37,790 + -1.0
37,905 + +0.1
37,931 - +0.7
38,053 + +1.1
38,149 + -1.2
38,150 - -0.9
38,150 - -2.7
38,150 - -3.0
38,152 + +0.9
38,159 + +1.3
38,160 - +0.9
38,265 + -1.2
38,265 + -1.0
38,266 - -0.5
38,307 + +1.3
38,308 - +1.2
38,815 + -0.7
38,816 - +2.3
38,816 - -0.1
38,816 - -0.8
38,896 + +1.2
38,896 + +1.8
38,896 + +1.9
38,896 + +0.1
38,896 + -1.3
38,897 - -3.7
38,897 - +1.0
39,031 + GFF5185 0.12 -0.4
39,031 + GFF5185 0.12 -1.5
39,031 + GFF5185 0.12 -1.2
39,031 + GFF5185 0.12 -0.5
39,032 - GFF5185 0.12 +0.8
39,032 - GFF5185 0.12 -2.6
39,032 - GFF5185 0.12 -0.3
39,148 + GFF5185 0.14 +0.6
39,148 + GFF5185 0.14 +0.0
39,148 + GFF5185 0.14 -2.3
39,148 + GFF5185 0.14 -0.4
39,149 - GFF5185 0.14 -3.1
39,187 + GFF5185 0.15 -2.7
39,187 + GFF5185 0.15 -2.0
39,188 - GFF5185 0.15 -0.4
39,188 - GFF5185 0.15 -0.0
39,188 - GFF5185 0.15 -0.2
39,226 + GFF5185 0.16 +0.8
39,226 + GFF5185 0.16 +0.4
39,226 + GFF5185 0.16 -0.3
39,226 + GFF5185 0.16 +0.6
39,226 + GFF5185 0.16 +0.5
39,227 - GFF5185 0.16 -0.4
39,256 + GFF5185 0.16 +0.1
39,257 - GFF5185 0.16 -0.5
39,257 - GFF5185 0.16 -1.8
39,257 - GFF5185 0.16 -0.3
39,385 + GFF5185 0.19 -0.1
39,454 + GFF5185 0.20 -1.4
39,454 + GFF5185 0.20 +0.5
39,454 + GFF5185 0.20 +1.1
39,454 + GFF5185 0.20 +0.3
39,454 + GFF5185 0.20 +0.3
39,455 - GFF5185 0.20 +1.0
39,455 - GFF5185 0.20 +1.6
39,455 - GFF5185 0.20 +0.4
39,455 - GFF5185 0.20 +0.6
39,455 - GFF5185 0.20 +1.8
39,604 + GFF5185 0.24 -1.8
39,604 + GFF5185 0.24 -0.2
39,605 - GFF5185 0.24 -2.1
39,605 - GFF5185 0.24 +0.7
39,605 - GFF5185 0.24 +1.6
39,605 - GFF5185 0.24 -1.1
39,607 + GFF5185 0.24 -0.7
39,608 - GFF5185 0.24 +1.2
39,608 - GFF5185 0.24 -0.2
39,644 - GFF5185 0.24 +2.1
39,745 + GFF5185 0.27 -0.7
39,787 + GFF5185 0.27 -1.1
39,976 + GFF5185 0.31 -0.3
39,977 - GFF5185 0.31 -0.7
39,977 - GFF5185 0.31 -1.5
39,977 - GFF5185 0.31 -2.6
40,111 + GFF5185 0.34 -0.6
40,111 + GFF5185 0.34 +0.7
40,111 + GFF5185 0.34 +1.1
40,112 - GFF5185 0.34 -0.9
40,124 - GFF5185 0.35 -0.7
40,124 - GFF5185 0.35 +0.2
40,124 - GFF5185 0.35 -1.3
40,132 + GFF5185 0.35 -2.4
40,132 + GFF5185 0.35 +0.2
40,381 + GFF5185 0.40 +0.6
40,382 - GFF5185 0.40 -2.8
40,382 - GFF5185 0.40 +0.3
40,382 - GFF5185 0.40 -0.9
40,382 - GFF5185 0.40 +0.1
40,384 + GFF5185 0.40 -2.3
40,384 + GFF5185 0.40 -2.1
40,384 + GFF5185 0.40 -1.1
40,385 - GFF5185 0.40 -0.3
40,385 - GFF5185 0.40 +1.2
40,472 - GFF5185 0.42 +1.5
40,888 + GFF5185 0.51 +1.1
41,545 + GFF5185 0.64 -2.6
41,926 + GFF5185 0.72 +0.1
41,927 - GFF5185 0.72 -2.4
41,953 + GFF5185 0.73 -2.3
41,954 - GFF5185 0.73 +0.9
42,133 + GFF5185 0.77 +0.9
42,134 - GFF5185 0.77 -0.5
42,244 + GFF5185 0.79 -1.8
42,244 + GFF5185 0.79 +0.1
42,245 - GFF5185 0.79 +0.5
42,245 - GFF5185 0.79 +0.3
42,245 - GFF5185 0.79 -2.5
42,245 - GFF5185 0.79 -0.8
42,445 + GFF5185 0.83 +0.3
42,446 - GFF5185 0.83 +0.8
42,667 + GFF5185 0.88 -1.6
43,138 + -0.2
43,235 + -2.3
43,235 + -0.1
43,235 + -3.8
43,235 + -2.5
43,236 - +0.2
43,236 - +1.2
43,236 - -0.5
43,236 - -2.8
43,236 - -0.4
43,236 - +0.1
43,236 - +0.7
43,419 + GFF5186 0.19 -1.8
43,419 + GFF5186 0.19 +0.1
43,420 - GFF5186 0.20 -1.0
43,650 + GFF5186 0.44 -1.9
43,650 + GFF5186 0.44 -0.2
43,651 - GFF5186 0.44 +1.0
43,651 - GFF5186 0.44 -1.3
43,651 - GFF5186 0.44 +0.4
43,929 + GFF5186 0.74 +1.0
43,929 + GFF5186 0.74 -2.6
43,930 - GFF5186 0.74 +0.6
43,930 - GFF5186 0.74 +0.5
44,106 + -0.6
44,200 + +0.9

Or see this region's nucleotide sequence