Strain Fitness in Variovorax sp. SCN45 around GFF5135

Experiment: Community=Locust bean gum; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5134 and GFF5135 overlap by 1 nucleotidesGFF5135 and GFF5136 are separated by 87 nucleotides GFF5134 - Chromosome partition protein smc, at 233,683 to 237,153 GFF5134 GFF5135 - DNA repair exonuclease family protein YhaO, at 237,153 to 238,409 GFF5135 GFF5136 - Putative DNA helicase, at 238,497 to 243,143 GFF5136 Position (kb) 237 238 239Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 236.246 kb on - strand, within GFF5134at 236.545 kb on + strand, within GFF5134at 236.545 kb on + strand, within GFF5134at 236.545 kb on + strand, within GFF5134at 236.546 kb on - strand, within GFF5134at 236.546 kb on - strand, within GFF5134at 236.546 kb on - strand, within GFF5134at 236.546 kb on - strand, within GFF5134at 236.844 kb on - strandat 237.028 kb on + strandat 237.306 kb on + strand, within GFF5135at 237.306 kb on + strand, within GFF5135at 237.306 kb on + strand, within GFF5135at 237.306 kb on + strand, within GFF5135at 237.307 kb on - strand, within GFF5135at 237.307 kb on - strand, within GFF5135at 237.307 kb on - strand, within GFF5135at 237.307 kb on - strand, within GFF5135at 237.307 kb on - strand, within GFF5135at 237.307 kb on - strand, within GFF5135at 237.680 kb on - strand, within GFF5135at 237.680 kb on - strand, within GFF5135at 237.814 kb on + strand, within GFF5135at 237.815 kb on - strand, within GFF5135at 237.815 kb on - strand, within GFF5135at 237.841 kb on + strand, within GFF5135at 237.848 kb on - strand, within GFF5135at 237.904 kb on + strand, within GFF5135at 237.904 kb on + strand, within GFF5135at 237.904 kb on + strand, within GFF5135at 237.904 kb on + strand, within GFF5135at 237.904 kb on + strand, within GFF5135at 237.904 kb on + strand, within GFF5135at 237.904 kb on + strand, within GFF5135at 237.904 kb on + strand, within GFF5135at 237.905 kb on - strand, within GFF5135at 237.905 kb on - strand, within GFF5135at 237.921 kb on - strand, within GFF5135at 237.940 kb on + strand, within GFF5135at 237.940 kb on + strand, within GFF5135at 237.940 kb on + strand, within GFF5135at 237.940 kb on + strand, within GFF5135at 237.941 kb on - strand, within GFF5135at 237.943 kb on + strand, within GFF5135at 238.207 kb on + strand, within GFF5135at 238.207 kb on + strand, within GFF5135at 238.207 kb on + strand, within GFF5135at 238.342 kb on + strandat 238.342 kb on + strandat 238.438 kb on + strandat 238.438 kb on + strandat 238.439 kb on - strandat 238.439 kb on - strandat 238.442 kb on + strandat 238.442 kb on + strandat 238.442 kb on + strandat 238.443 kb on - strandat 238.443 kb on - strandat 238.443 kb on - strandat 238.512 kb on + strandat 238.551 kb on - strandat 238.837 kb on + strandat 238.838 kb on - strandat 238.838 kb on - strandat 238.940 kb on - strandat 238.963 kb on + strand, within GFF5136at 238.963 kb on + strand, within GFF5136at 238.963 kb on + strand, within GFF5136at 238.964 kb on - strand, within GFF5136at 238.964 kb on - strand, within GFF5136at 238.964 kb on - strand, within GFF5136at 239.119 kb on + strand, within GFF5136at 239.119 kb on + strand, within GFF5136at 239.120 kb on - strand, within GFF5136at 239.120 kb on - strand, within GFF5136at 239.120 kb on - strand, within GFF5136at 239.120 kb on - strand, within GFF5136at 239.120 kb on - strand, within GFF5136

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
remove
236,246 - GFF5134 0.74 -0.8
236,545 + GFF5134 0.82 +0.2
236,545 + GFF5134 0.82 +1.5
236,545 + GFF5134 0.82 +1.7
236,546 - GFF5134 0.82 +2.3
236,546 - GFF5134 0.82 -1.5
236,546 - GFF5134 0.82 +0.0
236,546 - GFF5134 0.82 +1.2
236,844 - -2.6
237,028 + -0.8
237,306 + GFF5135 0.12 +0.3
237,306 + GFF5135 0.12 +0.8
237,306 + GFF5135 0.12 +1.1
237,306 + GFF5135 0.12 +1.1
237,307 - GFF5135 0.12 +0.7
237,307 - GFF5135 0.12 +0.3
237,307 - GFF5135 0.12 +1.7
237,307 - GFF5135 0.12 -1.9
237,307 - GFF5135 0.12 +2.1
237,307 - GFF5135 0.12 +1.6
237,680 - GFF5135 0.42 +0.5
237,680 - GFF5135 0.42 +1.1
237,814 + GFF5135 0.53 -0.0
237,815 - GFF5135 0.53 +0.7
237,815 - GFF5135 0.53 +0.8
237,841 + GFF5135 0.55 +0.7
237,848 - GFF5135 0.55 -0.2
237,904 + GFF5135 0.60 -0.6
237,904 + GFF5135 0.60 +0.3
237,904 + GFF5135 0.60 +2.3
237,904 + GFF5135 0.60 -1.5
237,904 + GFF5135 0.60 -3.1
237,904 + GFF5135 0.60 -2.0
237,904 + GFF5135 0.60 +1.2
237,904 + GFF5135 0.60 -1.5
237,905 - GFF5135 0.60 -0.2
237,905 - GFF5135 0.60 -0.7
237,921 - GFF5135 0.61 +0.7
237,940 + GFF5135 0.63 -0.6
237,940 + GFF5135 0.63 -1.0
237,940 + GFF5135 0.63 -0.5
237,940 + GFF5135 0.63 -2.8
237,941 - GFF5135 0.63 -1.9
237,943 + GFF5135 0.63 -2.2
238,207 + GFF5135 0.84 -0.7
238,207 + GFF5135 0.84 -0.2
238,207 + GFF5135 0.84 -0.7
238,342 + -1.7
238,342 + -1.9
238,438 + -2.2
238,438 + -0.3
238,439 - -1.1
238,439 - -0.1
238,442 + -0.2
238,442 + +0.1
238,442 + +1.5
238,443 - -0.2
238,443 - +2.8
238,443 - -1.8
238,512 + -3.0
238,551 - -1.9
238,837 + -1.1
238,838 - -3.2
238,838 - -2.1
238,940 - -3.6
238,963 + GFF5136 0.10 -0.2
238,963 + GFF5136 0.10 -2.4
238,963 + GFF5136 0.10 -0.2
238,964 - GFF5136 0.10 +2.1
238,964 - GFF5136 0.10 -1.6
238,964 - GFF5136 0.10 -0.9
239,119 + GFF5136 0.13 +1.2
239,119 + GFF5136 0.13 +0.9
239,120 - GFF5136 0.13 +0.6
239,120 - GFF5136 0.13 -0.8
239,120 - GFF5136 0.13 +0.3
239,120 - GFF5136 0.13 -0.8
239,120 - GFF5136 0.13 +0.6

Or see this region's nucleotide sequence