Strain Fitness in Variovorax sp. SCN45 around GFF5119

Experiment: Community=Locust bean gum; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5118 and GFF5119 are separated by 175 nucleotidesGFF5119 and GFF5120 are separated by 29 nucleotidesGFF5120 and GFF5121 are separated by 67 nucleotides GFF5118 - gluconolactonase family protein, at 219,775 to 220,707 GFF5118 GFF5119 - Ammonium transporter, at 220,883 to 222,322 GFF5119 GFF5120 - Nitrogen regulatory protein P-II, GlnK, at 222,352 to 222,690 GFF5120 GFF5121 - Probable signal peptide protein, at 222,758 to 223,624 GFF5121 Position (kb) 220 221 222 223Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 220.028 kb on + strand, within GFF5118at 220.074 kb on - strand, within GFF5118at 220.209 kb on - strand, within GFF5118at 220.209 kb on - strand, within GFF5118at 220.319 kb on + strand, within GFF5118at 220.319 kb on + strand, within GFF5118at 220.320 kb on - strand, within GFF5118at 220.476 kb on - strand, within GFF5118at 220.476 kb on - strand, within GFF5118at 220.476 kb on - strand, within GFF5118at 220.632 kb on - strandat 220.632 kb on - strandat 220.885 kb on - strandat 220.885 kb on - strandat 220.885 kb on - strandat 220.893 kb on + strandat 220.893 kb on + strandat 220.893 kb on + strandat 220.894 kb on - strandat 220.894 kb on - strandat 220.894 kb on - strandat 220.894 kb on - strandat 220.894 kb on - strandat 220.894 kb on - strandat 220.894 kb on - strandat 220.984 kb on - strandat 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.691 kb on + strand, within GFF5119at 221.691 kb on + strand, within GFF5119at 221.691 kb on + strand, within GFF5119at 221.691 kb on + strand, within GFF5119at 221.691 kb on + strand, within GFF5119at 221.691 kb on + strand, within GFF5119at 221.691 kb on + strand, within GFF5119at 221.691 kb on + strand, within GFF5119at 221.692 kb on - strand, within GFF5119at 221.692 kb on - strand, within GFF5119at 221.692 kb on - strand, within GFF5119at 221.692 kb on - strand, within GFF5119at 221.692 kb on - strand, within GFF5119at 221.692 kb on - strand, within GFF5119at 221.692 kb on - strand, within GFF5119at 221.692 kb on - strand, within GFF5119at 221.692 kb on - strand, within GFF5119at 221.692 kb on - strand, within GFF5119at 221.818 kb on - strand, within GFF5119at 221.818 kb on - strand, within GFF5119at 221.818 kb on - strand, within GFF5119at 221.925 kb on + strand, within GFF5119at 221.931 kb on + strand, within GFF5119at 221.931 kb on + strand, within GFF5119at 221.932 kb on - strand, within GFF5119at 222.021 kb on + strand, within GFF5119at 222.022 kb on - strand, within GFF5119at 222.268 kb on + strandat 222.269 kb on - strandat 222.269 kb on - strandat 222.269 kb on - strandat 222.323 kb on - strandat 222.323 kb on - strandat 222.410 kb on + strand, within GFF5120at 222.410 kb on + strand, within GFF5120at 222.410 kb on + strand, within GFF5120at 222.411 kb on - strand, within GFF5120at 222.539 kb on + strand, within GFF5120at 222.539 kb on + strand, within GFF5120at 222.539 kb on + strand, within GFF5120at 222.539 kb on + strand, within GFF5120at 222.539 kb on + strand, within GFF5120at 222.540 kb on - strand, within GFF5120at 222.540 kb on - strand, within GFF5120at 222.540 kb on - strand, within GFF5120at 222.759 kb on + strandat 222.760 kb on - strandat 222.760 kb on - strandat 222.807 kb on + strandat 222.807 kb on + strandat 222.807 kb on + strandat 222.808 kb on - strandat 222.808 kb on - strandat 222.808 kb on - strandat 222.867 kb on + strand, within GFF5121at 222.868 kb on - strand, within GFF5121at 222.868 kb on - strand, within GFF5121at 222.931 kb on - strand, within GFF5121at 222.948 kb on + strand, within GFF5121at 222.948 kb on + strand, within GFF5121at 222.948 kb on + strand, within GFF5121at 222.948 kb on + strand, within GFF5121at 222.948 kb on + strand, within GFF5121at 222.957 kb on + strand, within GFF5121at 222.957 kb on + strand, within GFF5121at 222.957 kb on + strand, within GFF5121at 222.957 kb on + strand, within GFF5121at 223.002 kb on + strand, within GFF5121at 223.050 kb on + strand, within GFF5121at 223.051 kb on - strand, within GFF5121at 223.051 kb on - strand, within GFF5121at 223.051 kb on - strand, within GFF5121at 223.122 kb on + strand, within GFF5121at 223.123 kb on - strand, within GFF5121at 223.123 kb on - strand, within GFF5121at 223.123 kb on - strand, within GFF5121at 223.123 kb on - strand, within GFF5121at 223.123 kb on - strand, within GFF5121at 223.146 kb on + strand, within GFF5121at 223.146 kb on + strand, within GFF5121at 223.146 kb on + strand, within GFF5121at 223.146 kb on + strand, within GFF5121at 223.146 kb on + strand, within GFF5121at 223.146 kb on + strand, within GFF5121at 223.182 kb on + strand, within GFF5121at 223.182 kb on + strand, within GFF5121at 223.182 kb on + strand, within GFF5121at 223.183 kb on - strand, within GFF5121at 223.183 kb on - strand, within GFF5121at 223.183 kb on - strand, within GFF5121at 223.183 kb on - strand, within GFF5121at 223.197 kb on + strand, within GFF5121at 223.197 kb on + strand, within GFF5121at 223.197 kb on + strand, within GFF5121at 223.198 kb on - strand, within GFF5121at 223.198 kb on - strand, within GFF5121at 223.198 kb on - strand, within GFF5121at 223.233 kb on + strand, within GFF5121at 223.234 kb on - strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.287 kb on + strand, within GFF5121at 223.296 kb on + strand, within GFF5121

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
remove
220,028 + GFF5118 0.27 -2.6
220,074 - GFF5118 0.32 +0.8
220,209 - GFF5118 0.47 -2.6
220,209 - GFF5118 0.47 +0.1
220,319 + GFF5118 0.58 -0.7
220,319 + GFF5118 0.58 -2.3
220,320 - GFF5118 0.58 +0.0
220,476 - GFF5118 0.75 -1.1
220,476 - GFF5118 0.75 +0.5
220,476 - GFF5118 0.75 -1.0
220,632 - -0.5
220,632 - +0.8
220,885 - -0.8
220,885 - +0.5
220,885 - +4.4
220,893 + -2.8
220,893 + +1.4
220,893 + -1.9
220,894 - +0.5
220,894 - -0.6
220,894 - +0.2
220,894 - -0.6
220,894 - +0.3
220,894 - -1.2
220,894 - +0.2
220,984 - +1.4
221,571 + GFF5119 0.48 -2.1
221,571 + GFF5119 0.48 +0.6
221,571 + GFF5119 0.48 +2.3
221,571 + GFF5119 0.48 -1.9
221,571 + GFF5119 0.48 +0.4
221,571 + GFF5119 0.48 -1.0
221,571 + GFF5119 0.48 -0.1
221,571 + GFF5119 0.48 -0.4
221,571 + GFF5119 0.48 -3.0
221,571 + GFF5119 0.48 +0.0
221,571 + GFF5119 0.48 -0.5
221,571 + GFF5119 0.48 +0.6
221,571 + GFF5119 0.48 +0.5
221,572 - GFF5119 0.48 -0.7
221,572 - GFF5119 0.48 -2.3
221,572 - GFF5119 0.48 -3.2
221,572 - GFF5119 0.48 -2.4
221,572 - GFF5119 0.48 +1.0
221,572 - GFF5119 0.48 -0.5
221,572 - GFF5119 0.48 -2.4
221,572 - GFF5119 0.48 -1.6
221,572 - GFF5119 0.48 +0.2
221,572 - GFF5119 0.48 +1.0
221,572 - GFF5119 0.48 -2.7
221,691 + GFF5119 0.56 +0.8
221,691 + GFF5119 0.56 +0.3
221,691 + GFF5119 0.56 +0.5
221,691 + GFF5119 0.56 +2.1
221,691 + GFF5119 0.56 +2.8
221,691 + GFF5119 0.56 -0.3
221,691 + GFF5119 0.56 -0.2
221,691 + GFF5119 0.56 -0.1
221,692 - GFF5119 0.56 +1.2
221,692 - GFF5119 0.56 +0.9
221,692 - GFF5119 0.56 -1.0
221,692 - GFF5119 0.56 +0.0
221,692 - GFF5119 0.56 +1.2
221,692 - GFF5119 0.56 -2.6
221,692 - GFF5119 0.56 +0.1
221,692 - GFF5119 0.56 -3.5
221,692 - GFF5119 0.56 -0.5
221,692 - GFF5119 0.56 +1.3
221,818 - GFF5119 0.65 +1.1
221,818 - GFF5119 0.65 -1.1
221,818 - GFF5119 0.65 +1.2
221,925 + GFF5119 0.72 -3.3
221,931 + GFF5119 0.73 -0.1
221,931 + GFF5119 0.73 -0.4
221,932 - GFF5119 0.73 +1.2
222,021 + GFF5119 0.79 +1.1
222,022 - GFF5119 0.79 +0.6
222,268 + -0.7
222,269 - +1.1
222,269 - +0.4
222,269 - +0.3
222,323 - +0.8
222,323 - +4.1
222,410 + GFF5120 0.17 -0.5
222,410 + GFF5120 0.17 -1.2
222,410 + GFF5120 0.17 -1.9
222,411 - GFF5120 0.17 +0.8
222,539 + GFF5120 0.55 -0.8
222,539 + GFF5120 0.55 -1.7
222,539 + GFF5120 0.55 -2.7
222,539 + GFF5120 0.55 +0.8
222,539 + GFF5120 0.55 +1.1
222,540 - GFF5120 0.55 -2.2
222,540 - GFF5120 0.55 -1.7
222,540 - GFF5120 0.55 +1.3
222,759 + -1.6
222,760 - +0.8
222,760 - +0.3
222,807 + +0.0
222,807 + +0.3
222,807 + +0.8
222,808 - +1.1
222,808 - -3.6
222,808 - +0.3
222,867 + GFF5121 0.13 -1.7
222,868 - GFF5121 0.13 +1.3
222,868 - GFF5121 0.13 -0.5
222,931 - GFF5121 0.20 +0.3
222,948 + GFF5121 0.22 +1.2
222,948 + GFF5121 0.22 +2.0
222,948 + GFF5121 0.22 +0.3
222,948 + GFF5121 0.22 -0.9
222,948 + GFF5121 0.22 +2.2
222,957 + GFF5121 0.23 -0.5
222,957 + GFF5121 0.23 -3.0
222,957 + GFF5121 0.23 -0.5
222,957 + GFF5121 0.23 +1.6
223,002 + GFF5121 0.28 -0.4
223,050 + GFF5121 0.34 +0.5
223,051 - GFF5121 0.34 -1.5
223,051 - GFF5121 0.34 -2.9
223,051 - GFF5121 0.34 -1.4
223,122 + GFF5121 0.42 -0.2
223,123 - GFF5121 0.42 +0.3
223,123 - GFF5121 0.42 +0.6
223,123 - GFF5121 0.42 -0.8
223,123 - GFF5121 0.42 +0.7
223,123 - GFF5121 0.42 -0.2
223,146 + GFF5121 0.45 -1.6
223,146 + GFF5121 0.45 -2.1
223,146 + GFF5121 0.45 +0.3
223,146 + GFF5121 0.45 +1.3
223,146 + GFF5121 0.45 -0.1
223,146 + GFF5121 0.45 -0.5
223,182 + GFF5121 0.49 -2.1
223,182 + GFF5121 0.49 -1.0
223,182 + GFF5121 0.49 -1.2
223,183 - GFF5121 0.49 +0.8
223,183 - GFF5121 0.49 +1.5
223,183 - GFF5121 0.49 +1.5
223,183 - GFF5121 0.49 +1.1
223,197 + GFF5121 0.51 +0.3
223,197 + GFF5121 0.51 -0.2
223,197 + GFF5121 0.51 +1.1
223,198 - GFF5121 0.51 -1.7
223,198 - GFF5121 0.51 +0.4
223,198 - GFF5121 0.51 -1.7
223,233 + GFF5121 0.55 -1.4
223,234 - GFF5121 0.55 -2.1
223,239 + GFF5121 0.55 +0.9
223,239 + GFF5121 0.55 +0.8
223,239 + GFF5121 0.55 -1.5
223,239 + GFF5121 0.55 -0.2
223,239 + GFF5121 0.55 +0.7
223,239 + GFF5121 0.55 +1.1
223,239 + GFF5121 0.55 -2.2
223,239 + GFF5121 0.55 -0.3
223,239 + GFF5121 0.55 -1.2
223,239 + GFF5121 0.55 +0.3
223,239 + GFF5121 0.55 +2.5
223,240 - GFF5121 0.56 -2.4
223,240 - GFF5121 0.56 -2.3
223,240 - GFF5121 0.56 +0.3
223,240 - GFF5121 0.56 -2.1
223,240 - GFF5121 0.56 -1.0
223,240 - GFF5121 0.56 -1.7
223,240 - GFF5121 0.56 -1.7
223,240 - GFF5121 0.56 -0.6
223,240 - GFF5121 0.56 +2.3
223,240 - GFF5121 0.56 +2.3
223,240 - GFF5121 0.56 +0.0
223,240 - GFF5121 0.56 -0.2
223,240 - GFF5121 0.56 -0.8
223,240 - GFF5121 0.56 -1.1
223,240 - GFF5121 0.56 -0.2
223,240 - GFF5121 0.56 -2.0
223,240 - GFF5121 0.56 -1.0
223,287 + GFF5121 0.61 +1.0
223,296 + GFF5121 0.62 -2.4

Or see this region's nucleotide sequence