Strain Fitness in Variovorax sp. SCN45 around GFF4980

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
78,848	+				-1.3
78,848	+				-2.4
78,848	+				-2.9
78,848	+				-0.1
78,848	+				-0.1
78,848	+				-0.2
78,848	+				-2.7
78,848	+				-2.5
78,848	+				-1.8
78,848	+				-2.1
78,848	+				-1.8
78,849	-				+0.0
78,849	-				-1.7
78,849	-				+0.8
78,849	-				+0.8
78,849	-				-2.2
78,849	-				-1.4
78,849	-				-0.2
78,849	-				+0.7
78,965	+				-0.5
78,965	+				+0.8
78,965	+				-3.0
78,965	+				-0.5
78,966	-				+0.3
78,966	-				-0.5
78,966	-				-0.7
78,966	-				+0.0
78,967	-				+0.3
79,031	+				+0.3
79,031	+				+0.9
79,031	+				-0.2
79,031	+				+0.5
79,031	+				+1.9
79,031	+				+1.2
79,031	+				+0.2
79,031	+				-1.0
79,031	+				-0.5
79,031	+				-3.2
79,031	+				+0.4
79,031	+				-0.8
79,031	+				-2.9
79,031	+				-2.7
79,031	+				-0.1
79,031	+				-2.2
79,032	-				+0.9
79,032	-				-1.5
79,032	-				-0.2
79,032	-				-1.0
79,032	-				+0.6
79,032	-				+0.4
79,032	-				+0.8
79,032	-				-0.8
79,032	-				-0.0
79,032	-				-1.9
79,032	-				-0.6
79,032	-				-1.9
79,032	-				-0.7
79,032	-				+1.8
79,032	-				+1.2
79,032	-				-1.0
79,032	-				-0.2
79,032	-				-0.1
79,037	+				-0.5
79,037	+				+0.3
79,037	+				+0.3
79,037	+				+1.4
79,037	+				-0.7
79,037	+				-1.0
79,038	-				-1.0
79,038	-				-1.8
79,038	-				-0.7
79,038	-				+1.0
79,038	-				-0.6
79,038	-				-2.0
79,038	-				+0.8
79,038	-				+0.8
79,073	+				+0.6
79,073	+				-1.1
79,073	+				+0.3
79,073	+				+2.3
79,073	+				+1.4
79,073	+				-0.9
79,074	-				-0.5
79,074	-				-1.7
79,074	-				+0.8
79,074	-				-1.0
79,074	-				+0.3
79,139	+		GFF4979	0.16	-2.6
79,139	+		GFF4979	0.16	+1.5
79,139	+		GFF4979	0.16	-1.6
79,139	+		GFF4979	0.16	-2.7
79,139	+		GFF4979	0.16	-1.8
79,140	-		GFF4979	0.16	-0.8
79,140	-		GFF4979	0.16	+0.0
79,140	-		GFF4979	0.16	+1.4
79,140	-		GFF4979	0.16	-1.0
79,140	-		GFF4979	0.16	+1.7
79,140	-		GFF4979	0.16	+0.2
79,140	-		GFF4979	0.16	+1.2
79,140	-		GFF4979	0.16	-0.6
79,199	+		GFF4979	0.24	-0.9
79,199	+		GFF4979	0.24	+0.0
79,199	+		GFF4979	0.24	-0.5
79,199	+		GFF4979	0.24	+1.2
79,199	+		GFF4979	0.24	-1.6
79,199	+		GFF4979	0.24	-0.5
79,200	-		GFF4979	0.25	+2.6
79,200	-		GFF4979	0.25	-1.5
79,200	-		GFF4979	0.25	-0.9
79,200	-		GFF4979	0.25	-0.1
79,200	-		GFF4979	0.25	-3.7
79,200	-		GFF4979	0.25	-0.5
79,200	-		GFF4979	0.25	-1.8
79,200	-		GFF4979	0.25	+0.4
79,208	+		GFF4979	0.26	-3.2
79,208	+		GFF4979	0.26	-0.6
79,208	+		GFF4979	0.26	-0.9
79,208	+		GFF4979	0.26	+0.9
79,209	-		GFF4979	0.26	+0.8
79,209	-		GFF4979	0.26	+0.3
79,209	-		GFF4979	0.26	+0.8
79,209	-		GFF4979	0.26	-3.2
79,262	+		GFF4979	0.34	-0.6
79,262	+		GFF4979	0.34	-0.5
79,263	-		GFF4979	0.34	-1.2
79,275	-		GFF4979	0.36	-2.5
79,289	+		GFF4979	0.38	+0.2
79,289	+		GFF4979	0.38	+0.2
79,289	+		GFF4979	0.38	-1.4
79,289	+		GFF4979	0.38	-0.2
79,290	-		GFF4979	0.38	-1.6
79,319	+		GFF4979	0.42	+2.9
79,319	+		GFF4979	0.42	+0.1
79,319	+		GFF4979	0.42	-0.7
79,320	-		GFF4979	0.42	+0.7
79,320	-		GFF4979	0.42	-4.1
79,406	+		GFF4979	0.54	-1.5
79,406	+		GFF4979	0.54	-1.4
79,406	+		GFF4979	0.54	-1.3
79,406	+		GFF4979	0.54	-3.6
79,406	+		GFF4979	0.54	+0.5
79,406	+		GFF4979	0.54	-1.0
79,407	-		GFF4979	0.55	-0.6
79,407	-		GFF4979	0.55	-1.9
79,407	-		GFF4979	0.55	+1.8
79,407	-		GFF4979	0.55	-3.4
79,407	-		GFF4979	0.55	-1.4
79,407	-		GFF4979	0.55	-0.8
79,407	-		GFF4979	0.55	-1.0
79,407	-		GFF4979	0.55	-1.2
79,526	+		GFF4979	0.72	+0.5
79,526	+		GFF4979	0.72	-1.4
79,526	+		GFF4979	0.72	-1.9
79,526	+		GFF4979	0.72	+0.9
79,526	+		GFF4979	0.72	-0.3
79,526	+		GFF4979	0.72	+0.3
79,526	+		GFF4979	0.72	+0.8
79,526	+		GFF4979	0.72	-4.4
79,526	+		GFF4979	0.72	-0.4
79,526	+		GFF4979	0.72	-0.3
79,526	+		GFF4979	0.72	-0.5
79,527	-		GFF4979	0.72	-1.3
79,527	-		GFF4979	0.72	-0.5
79,527	-		GFF4979	0.72	-2.1
79,527	-		GFF4979	0.72	-2.7
79,527	-		GFF4979	0.72	+0.1
79,527	-		GFF4979	0.72	-0.1
79,527	-		GFF4979	0.72	-0.1
79,527	-		GFF4979	0.72	-1.9
79,527	-		GFF4979	0.72	+0.3
79,527	-		GFF4979	0.72	+1.5
79,527	-		GFF4979	0.72	-1.1
79,527	-		GFF4979	0.72	+0.7
79,527	-		GFF4979	0.72	-1.7
79,527	-		GFF4979	0.72	+1.2
79,527	-		GFF4979	0.72	-0.2
79,527	-		GFF4979	0.72	+2.5
79,527	-		GFF4979	0.72	-3.8
79,532	+		GFF4979	0.73	-2.2
79,532	+		GFF4979	0.73	-1.9
79,532	+		GFF4979	0.73	+0.6
79,532	+		GFF4979	0.73	-0.2
79,532	+		GFF4979	0.73	-0.4
79,532	+		GFF4979	0.73	-1.9
79,532	+		GFF4979	0.73	+0.8
79,532	+		GFF4979	0.73	-1.7
79,533	-		GFF4979	0.73	-1.0
79,533	-		GFF4979	0.73	+0.4
79,533	-		GFF4979	0.73	-0.1
79,533	-		GFF4979	0.73	-0.2
79,533	-		GFF4979	0.73	-0.8
79,533	-		GFF4979	0.73	+1.0
79,533	-		GFF4979	0.73	-2.6
79,533	-		GFF4979	0.73	+1.8
79,626	+		GFF4979	0.86	+1.1
79,627	-		GFF4979	0.87	+1.7
79,627	-		GFF4979	0.87	+0.3
79,759	-				-2.1
79,774	+				+1.1
79,774	+				-0.2
79,774	+				-0.2
79,775	-				+1.8
79,775	-				-1.9
79,783	+				-3.1
79,783	+				+0.1
79,784	-				-0.5
79,876	+		GFF4980	0.22	-0.2
79,876	+		GFF4980	0.22	+0.4
79,877	-		GFF4980	0.22	-1.2
79,877	-		GFF4980	0.22	-1.1
79,877	-		GFF4980	0.22	-1.4
79,877	-		GFF4980	0.22	-0.9
79,877	-		GFF4980	0.22	-0.1
79,877	-		GFF4980	0.22	-2.3
79,877	-		GFF4980	0.22	+0.8
79,877	-		GFF4980	0.22	-0.7
79,877	-		GFF4980	0.22	+2.1
79,888	+		GFF4980	0.24	+1.3
79,889	-		GFF4980	0.24	-0.1
79,924	+		GFF4980	0.32	-0.1
79,924	+		GFF4980	0.32	-2.1
79,924	+		GFF4980	0.32	-1.7
79,924	+		GFF4980	0.32	+0.9
79,924	+		GFF4980	0.32	-0.6
79,924	+		GFF4980	0.32	-2.6
79,925	-		GFF4980	0.32	-0.8
79,925	-		GFF4980	0.32	-0.9
79,925	-		GFF4980	0.32	-2.8
79,925	-		GFF4980	0.32	+1.3
79,925	-		GFF4980	0.32	+0.8
79,948	+		GFF4980	0.37	+0.7
79,949	-		GFF4980	0.37	-1.8
79,949	-		GFF4980	0.37	-3.2
79,949	-		GFF4980	0.37	-0.9
79,949	-		GFF4980	0.37	+0.1
80,292	+				+1.9
80,292	+				-0.7
80,293	-				-1.7
80,293	-				+0.0
80,293	-				-1.7
80,295	+				-0.9
80,295	+				-0.4
80,295	+				-3.5
80,295	+				-0.4
80,295	+				-2.4
80,295	+				-0.1
80,295	+				-0.2
80,295	+				-2.1
80,295	+				-1.7
80,295	+				-0.5
80,296	-				-1.6
80,296	-				+1.0
80,296	-				-0.2
80,296	-				+1.1
80,310	+				-0.8
80,310	+				+0.3
80,310	+				-2.6
80,310	+				+0.0
80,310	+				-0.0
80,311	-				+0.8
80,311	-				-2.7
80,340	-				-2.2
80,346	-				-0.1
80,346	-				-0.4
80,349	+				-1.4
80,349	+				-3.4
80,349	+				-0.2
80,349	+				+1.9
80,349	+				+0.9
80,349	+				-2.2
80,350	-				-0.8
80,350	-				-1.2
80,350	-				-0.1
80,350	-				+0.2
80,350	-				-2.3
80,636	+		GFF4981	0.13	-0.7
80,636	+		GFF4981	0.13	-1.4
80,636	+		GFF4981	0.13	+0.2
80,637	-		GFF4981	0.13	+0.5
80,637	-		GFF4981	0.13	-0.6
80,637	-		GFF4981	0.13	-2.6
80,637	-		GFF4981	0.13	-0.7
80,942	+		GFF4981	0.27	-1.1
80,943	-		GFF4981	0.27	-0.2
80,943	-		GFF4981	0.27	+0.1
80,969	+		GFF4981	0.28	+0.5
80,969	+		GFF4981	0.28	-0.9
80,969	+		GFF4981	0.28	-0.0
80,970	-		GFF4981	0.28	-0.4
80,970	-		GFF4981	0.28	-0.0
80,996	+		GFF4981	0.29	-2.8
80,996	+		GFF4981	0.29	+0.7
80,996	+		GFF4981	0.29	+0.7
80,996	+		GFF4981	0.29	-0.4
80,996	+		GFF4981	0.29	-1.6
80,996	+		GFF4981	0.29	-0.3
80,996	+		GFF4981	0.29	+1.3
80,996	+		GFF4981	0.29	-2.2
80,996	+		GFF4981	0.29	-2.5
80,996	+		GFF4981	0.29	-0.1
80,996	+		GFF4981	0.29	+1.9
80,996	+		GFF4981	0.29	+0.2
80,996	+		GFF4981	0.29	+0.6
80,996	+		GFF4981	0.29	+0.7
80,996	+		GFF4981	0.29	+2.7
80,996	+		GFF4981	0.29	-0.2
80,996	+		GFF4981	0.29	-0.2
80,996	+		GFF4981	0.29	+1.3
80,996	+		GFF4981	0.29	-1.1
80,996	+		GFF4981	0.29	-0.5
80,996	+		GFF4981	0.29	+1.3
80,996	+		GFF4981	0.29	-0.5
80,996	+		GFF4981	0.29	+2.8
80,997	-		GFF4981	0.29	+0.5
80,997	-		GFF4981	0.29	+0.3
80,997	-		GFF4981	0.29	+0.8
80,997	-		GFF4981	0.29	-1.8
80,997	-		GFF4981	0.29	-0.4
80,997	-		GFF4981	0.29	-0.8
80,997	-		GFF4981	0.29	+0.3
80,997	-		GFF4981	0.29	+0.8
80,997	-		GFF4981	0.29	-1.5
80,997	-		GFF4981	0.29	-2.5
80,997	-		GFF4981	0.29	-1.2
80,997	-		GFF4981	0.29	+0.0
80,997	-		GFF4981	0.29	-0.4
80,997	-		GFF4981	0.29	+2.3
80,997	-		GFF4981	0.29	+1.5
80,997	-		GFF4981	0.29	+3.0
80,997	-		GFF4981	0.29	-1.1
80,997	-		GFF4981	0.29	+1.3