Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4839 and GFF4840 are separated by 582 nucleotides GFF4840 and GFF4841 overlap by 4 nucleotides GFF4841 and GFF4842 are separated by 2 nucleotides GFF4842 and GFF4843 overlap by 4 nucleotides
GFF4839 - Transcriptional regulator PA2737, MerR family, at 209,239 to 209,706
GFF4839
GFF4840 - FIG00956188: hypothetical protein, at 210,289 to 210,534
GFF4840
GFF4841 - Conjugative transfer protein TrbI, at 210,531 to 211,802
GFF4841
GFF4842 - Conjugative transfer protein TrbG, at 211,805 to 212,800
GFF4842
GFF4843 - Conjugative transfer protein TrbF, at 212,797 to 213,501
GFF4843
Position (kb) 210
211
212 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 209.714 kb on + strand at 209.714 kb on + strand at 209.715 kb on - strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.720 kb on + strand at 209.817 kb on + strand at 209.817 kb on + strand at 209.817 kb on + strand at 209.817 kb on + strand at 209.817 kb on + strand at 209.818 kb on - strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.936 kb on + strand at 209.936 kb on + strand at 209.936 kb on + strand at 209.936 kb on + strand at 209.936 kb on + strand at 209.937 kb on - strand at 209.937 kb on - strand at 209.937 kb on - strand at 209.950 kb on + strand at 209.951 kb on - strand at 209.951 kb on - strand at 209.951 kb on - strand at 209.951 kb on - strand at 210.065 kb on + strand at 210.065 kb on + strand at 210.065 kb on + strand at 210.066 kb on - strand at 210.066 kb on - strand at 210.066 kb on - strand at 210.072 kb on + strand at 210.073 kb on - strand at 210.073 kb on - strand at 210.073 kb on - strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.124 kb on + strand at 210.124 kb on + strand at 210.124 kb on + strand at 210.124 kb on + strand at 210.124 kb on + strand at 210.124 kb on + strand at 210.124 kb on + strand at 210.125 kb on - strand at 210.125 kb on - strand at 210.125 kb on - strand at 210.135 kb on + strand at 210.135 kb on + strand at 210.135 kb on + strand at 210.136 kb on - strand at 210.136 kb on - strand at 210.152 kb on + strand at 210.153 kb on - strand at 210.153 kb on - strand at 210.196 kb on + strand at 210.196 kb on + strand at 210.196 kb on + strand at 210.196 kb on + strand at 210.197 kb on - strand at 210.197 kb on - strand at 210.197 kb on - strand at 210.407 kb on + strand, within GFF4840 at 210.408 kb on - strand, within GFF4840 at 210.408 kb on - strand, within GFF4840 at 210.408 kb on - strand, within GFF4840 at 210.432 kb on - strand, within GFF4840 at 210.568 kb on + strand at 210.568 kb on + strand at 210.847 kb on + strand, within GFF4841 at 210.946 kb on + strand, within GFF4841 at 210.946 kb on + strand, within GFF4841 at 210.947 kb on - strand, within GFF4841 at 210.947 kb on - strand, within GFF4841 at 210.947 kb on - strand, within GFF4841 at 210.947 kb on - strand, within GFF4841 at 210.947 kb on - strand, within GFF4841 at 210.947 kb on - strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.965 kb on - strand, within GFF4841 at 210.965 kb on - strand, within GFF4841 at 210.965 kb on - strand, within GFF4841 at 210.965 kb on - strand, within GFF4841 at 210.965 kb on - strand, within GFF4841 at 210.965 kb on - strand, within GFF4841 at 211.024 kb on + strand, within GFF4841 at 211.024 kb on + strand, within GFF4841 at 211.024 kb on + strand, within GFF4841 at 211.024 kb on + strand, within GFF4841 at 211.024 kb on + strand, within GFF4841 at 211.025 kb on - strand, within GFF4841 at 211.123 kb on + strand, within GFF4841 at 211.124 kb on - strand, within GFF4841 at 211.435 kb on + strand, within GFF4841 at 211.435 kb on + strand, within GFF4841 at 211.435 kb on + strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.588 kb on + strand, within GFF4841 at 211.588 kb on + strand, within GFF4841 at 211.588 kb on + strand, within GFF4841 at 211.588 kb on + strand, within GFF4841 at 211.588 kb on + strand, within GFF4841 at 211.588 kb on + strand, within GFF4841 at 211.588 kb on + strand, within GFF4841 at 211.588 kb on + strand, within GFF4841 at 211.588 kb on + strand, within GFF4841 at 211.752 kb on + strand at 211.752 kb on + strand at 211.752 kb on + strand at 211.752 kb on + strand at 211.752 kb on + strand at 211.752 kb on + strand at 211.752 kb on + strand at 211.752 kb on + strand at 211.753 kb on - strand at 211.753 kb on - strand at 211.753 kb on - strand at 211.753 kb on - strand at 211.753 kb on - strand at 211.753 kb on - strand at 211.753 kb on - strand at 211.753 kb on - strand at 211.753 kb on - strand at 211.753 kb on - strand at 211.908 kb on + strand, within GFF4842 at 211.908 kb on + strand, within GFF4842 at 211.908 kb on + strand, within GFF4842 at 211.908 kb on + strand, within GFF4842 at 211.908 kb on + strand, within GFF4842 at 211.908 kb on + strand, within GFF4842 at 211.908 kb on + strand, within GFF4842 at 211.908 kb on + strand, within GFF4842 at 211.908 kb on + strand, within GFF4842 at 211.909 kb on - strand, within GFF4842 at 211.909 kb on - strand, within GFF4842 at 211.909 kb on - strand, within GFF4842 at 211.909 kb on - strand, within GFF4842 at 211.909 kb on - strand, within GFF4842 at 211.909 kb on - strand, within GFF4842 at 211.909 kb on - strand, within GFF4842 at 211.911 kb on + strand, within GFF4842 at 211.911 kb on + strand, within GFF4842 at 211.912 kb on - strand, within GFF4842 at 211.929 kb on + strand, within GFF4842 at 211.930 kb on - strand, within GFF4842 at 211.930 kb on - strand, within GFF4842 at 211.930 kb on - strand, within GFF4842 at 212.014 kb on + strand, within GFF4842 at 212.014 kb on + strand, within GFF4842 at 212.015 kb on - strand, within GFF4842 at 212.015 kb on - strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.016 kb on + strand, within GFF4842 at 212.017 kb on - strand, within GFF4842 at 212.017 kb on - strand, within GFF4842 at 212.017 kb on - strand, within GFF4842 at 212.017 kb on - strand, within GFF4842 at 212.017 kb on - strand, within GFF4842 at 212.017 kb on - strand, within GFF4842 at 212.184 kb on + strand, within GFF4842 at 212.184 kb on + strand, within GFF4842 at 212.185 kb on - strand, within GFF4842 at 212.241 kb on + strand, within GFF4842 at 212.241 kb on + strand, within GFF4842 at 212.241 kb on + strand, within GFF4842 at 212.241 kb on + strand, within GFF4842 at 212.242 kb on - strand, within GFF4842 at 212.363 kb on + strand, within GFF4842 at 212.364 kb on - strand, within GFF4842 at 212.432 kb on + strand, within GFF4842 at 212.442 kb on + strand, within GFF4842 at 212.442 kb on + strand, within GFF4842 at 212.443 kb on - strand, within GFF4842 at 212.443 kb on - strand, within GFF4842 at 212.451 kb on + strand, within GFF4842 at 212.451 kb on + strand, within GFF4842 at 212.452 kb on - strand, within GFF4842 at 212.496 kb on + strand, within GFF4842 at 212.496 kb on + strand, within GFF4842 at 212.496 kb on + strand, within GFF4842 at 212.497 kb on - strand, within GFF4842 at 212.497 kb on - strand, within GFF4842 at 212.682 kb on - strand, within GFF4842 at 212.682 kb on - strand, within GFF4842 at 212.783 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 209,714 + +0.2 209,714 + +0.5 209,715 - -0.2 209,718 + -0.9 209,718 + -1.4 209,718 + +0.0 209,718 + -1.9 209,718 + -1.9 209,718 + -1.7 209,718 + -1.2 209,718 + -0.5 209,719 - -1.0 209,719 - +1.0 209,719 - -1.8 209,719 - -2.1 209,719 - -0.5 209,719 - -3.1 209,719 - -2.1 209,719 - +0.1 209,719 - +1.5 209,719 - +1.0 209,719 - -0.2 209,719 - -0.8 209,720 + +0.8 209,817 + +0.4 209,817 + +0.2 209,817 + +0.1 209,817 + -3.3 209,817 + +0.8 209,818 - +1.8 209,821 + -1.5 209,821 + +0.8 209,821 + -0.9 209,821 + -0.5 209,821 + -0.8 209,821 + -0.1 209,821 + -2.7 209,821 + -1.0 209,821 + -2.1 209,821 + +1.2 209,821 + -0.5 209,821 + -0.4 209,821 + -1.5 209,821 + +0.9 209,821 + +2.0 209,822 - -1.7 209,822 - -1.0 209,822 - +0.5 209,822 - -0.5 209,822 - +0.4 209,822 - -0.5 209,822 - -1.0 209,822 - -0.4 209,936 + +0.2 209,936 + -1.7 209,936 + -1.1 209,936 + -2.2 209,936 + -0.9 209,937 - -0.2 209,937 - -2.7 209,937 - +0.2 209,950 + -1.0 209,951 - +1.3 209,951 - -4.2 209,951 - -0.9 209,951 - -1.4 210,065 + +2.3 210,065 + +0.9 210,065 + +1.0 210,066 - +1.4 210,066 - +1.1 210,066 - -0.5 210,072 + +0.4 210,073 - -1.5 210,073 - -0.2 210,073 - +0.7 210,075 + +1.1 210,075 + -1.1 210,075 + -0.0 210,075 + +1.0 210,075 + +0.7 210,075 + +0.6 210,075 + -0.2 210,075 + +0.7 210,075 + +0.1 210,075 + +1.8 210,075 + +0.8 210,075 + -0.5 210,075 + -2.5 210,075 + -3.0 210,075 + +2.0 210,075 + -3.5 210,075 + +0.4 210,075 + +0.1 210,076 - -1.2 210,076 - -1.5 210,076 - -2.3 210,076 - +0.6 210,076 - +0.4 210,076 - +4.5 210,076 - +0.5 210,076 - +0.4 210,076 - +0.3 210,076 - -0.2 210,076 - -1.2 210,076 - -2.4 210,124 + -0.3 210,124 + -2.5 210,124 + -0.8 210,124 + +0.4 210,124 + -0.1 210,124 + -0.4 210,124 + -0.8 210,125 - -2.6 210,125 - +1.0 210,125 - +0.7 210,135 + +1.2 210,135 + +1.4 210,135 + +0.4 210,136 - +2.0 210,136 - +0.2 210,152 + -0.9 210,153 - -1.2 210,153 - +0.4 210,196 + +1.1 210,196 + -0.2 210,196 + +0.1 210,196 + -4.3 210,197 - +0.0 210,197 - -0.7 210,197 - +2.2 210,407 + GFF4840 0.48 -0.5 210,408 - GFF4840 0.48 -0.0 210,408 - GFF4840 0.48 +1.0 210,408 - GFF4840 0.48 -2.5 210,432 - GFF4840 0.58 -2.3 210,568 + -1.1 210,568 + -2.5 210,847 + GFF4841 0.25 -0.3 210,946 + GFF4841 0.33 -2.2 210,946 + GFF4841 0.33 -0.9 210,947 - GFF4841 0.33 -0.5 210,947 - GFF4841 0.33 +0.1 210,947 - GFF4841 0.33 +1.7 210,947 - GFF4841 0.33 -2.0 210,947 - GFF4841 0.33 +0.4 210,947 - GFF4841 0.33 +0.5 210,964 + GFF4841 0.34 +0.2 210,964 + GFF4841 0.34 -0.3 210,964 + GFF4841 0.34 +0.8 210,964 + GFF4841 0.34 -1.0 210,964 + GFF4841 0.34 -1.9 210,964 + GFF4841 0.34 -1.9 210,964 + GFF4841 0.34 -2.1 210,965 - GFF4841 0.34 -2.3 210,965 - GFF4841 0.34 -1.8 210,965 - GFF4841 0.34 +0.4 210,965 - GFF4841 0.34 -0.5 210,965 - GFF4841 0.34 -2.1 210,965 - GFF4841 0.34 -0.8 211,024 + GFF4841 0.39 +0.0 211,024 + GFF4841 0.39 -0.1 211,024 + GFF4841 0.39 -2.5 211,024 + GFF4841 0.39 +0.6 211,024 + GFF4841 0.39 +1.8 211,025 - GFF4841 0.39 +2.6 211,123 + GFF4841 0.47 -1.7 211,124 - GFF4841 0.47 +0.1 211,435 + GFF4841 0.71 -1.0 211,435 + GFF4841 0.71 -2.2 211,435 + GFF4841 0.71 +0.9 211,436 - GFF4841 0.71 -1.5 211,436 - GFF4841 0.71 -0.2 211,436 - GFF4841 0.71 -2.1 211,436 - GFF4841 0.71 -0.2 211,436 - GFF4841 0.71 -2.8 211,436 - GFF4841 0.71 -0.5 211,436 - GFF4841 0.71 -2.5 211,436 - GFF4841 0.71 -1.7 211,588 + GFF4841 0.83 -0.3 211,588 + GFF4841 0.83 +0.8 211,588 + GFF4841 0.83 -1.8 211,588 + GFF4841 0.83 -1.2 211,588 + GFF4841 0.83 +1.8 211,588 + GFF4841 0.83 -2.4 211,588 + GFF4841 0.83 -1.0 211,588 + GFF4841 0.83 -3.2 211,588 + GFF4841 0.83 +0.5 211,752 + +0.3 211,752 + +0.3 211,752 + +3.1 211,752 + +0.9 211,752 + -0.8 211,752 + -1.0 211,752 + +0.2 211,752 + -1.0 211,753 - +0.1 211,753 - +1.7 211,753 - -0.3 211,753 - -2.3 211,753 - -0.8 211,753 - -2.3 211,753 - -1.0 211,753 - -2.8 211,753 - +0.2 211,753 - -1.0 211,908 + GFF4842 0.10 -0.6 211,908 + GFF4842 0.10 -1.4 211,908 + GFF4842 0.10 -1.9 211,908 + GFF4842 0.10 +0.9 211,908 + GFF4842 0.10 -1.0 211,908 + GFF4842 0.10 +0.4 211,908 + GFF4842 0.10 +1.6 211,908 + GFF4842 0.10 -2.1 211,908 + GFF4842 0.10 -1.7 211,909 - GFF4842 0.10 -2.2 211,909 - GFF4842 0.10 +0.2 211,909 - GFF4842 0.10 +0.1 211,909 - GFF4842 0.10 +1.3 211,909 - GFF4842 0.10 -1.2 211,909 - GFF4842 0.10 -1.2 211,909 - GFF4842 0.10 -0.1 211,911 + GFF4842 0.11 -1.7 211,911 + GFF4842 0.11 -0.0 211,912 - GFF4842 0.11 +0.3 211,929 + GFF4842 0.12 +0.2 211,930 - GFF4842 0.13 -1.0 211,930 - GFF4842 0.13 -1.4 211,930 - GFF4842 0.13 +0.1 212,014 + GFF4842 0.21 +0.2 212,014 + GFF4842 0.21 -0.2 212,015 - GFF4842 0.21 +1.0 212,015 - GFF4842 0.21 -1.8 212,016 + GFF4842 0.21 +0.8 212,016 + GFF4842 0.21 -0.8 212,016 + GFF4842 0.21 +0.3 212,016 + GFF4842 0.21 -0.2 212,016 + GFF4842 0.21 -0.4 212,016 + GFF4842 0.21 -0.5 212,016 + GFF4842 0.21 -2.9 212,016 + GFF4842 0.21 +0.3 212,016 + GFF4842 0.21 -1.8 212,016 + GFF4842 0.21 -0.1 212,016 + GFF4842 0.21 -3.3 212,017 - GFF4842 0.21 +0.8 212,017 - GFF4842 0.21 -2.8 212,017 - GFF4842 0.21 +0.7 212,017 - GFF4842 0.21 -0.9 212,017 - GFF4842 0.21 +2.2 212,017 - GFF4842 0.21 +0.6 212,184 + GFF4842 0.38 +0.7 212,184 + GFF4842 0.38 -0.5 212,185 - GFF4842 0.38 -0.0 212,241 + GFF4842 0.44 -2.2 212,241 + GFF4842 0.44 -0.5 212,241 + GFF4842 0.44 +2.3 212,241 + GFF4842 0.44 -3.8 212,242 - GFF4842 0.44 -0.5 212,363 + GFF4842 0.56 -2.6 212,364 - GFF4842 0.56 -0.2 212,432 + GFF4842 0.63 +0.8 212,442 + GFF4842 0.64 -0.1 212,442 + GFF4842 0.64 -0.8 212,443 - GFF4842 0.64 -0.1 212,443 - GFF4842 0.64 +0.4 212,451 + GFF4842 0.65 -1.5 212,451 + GFF4842 0.65 +0.5 212,452 - GFF4842 0.65 -0.2 212,496 + GFF4842 0.69 +1.6 212,496 + GFF4842 0.69 +0.8 212,496 + GFF4842 0.69 +0.5 212,497 - GFF4842 0.69 +1.1 212,497 - GFF4842 0.69 +0.6 212,682 - GFF4842 0.88 -1.4 212,682 - GFF4842 0.88 -0.5 212,783 - -3.5
Or see this region's nucleotide sequence