Strain Fitness in Variovorax sp. SCN45 around GFF4647

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
2,581	+				+2.0
2,581	+				-0.3
2,581	+				-0.8
2,581	+				+0.1
2,581	+				+0.1
2,581	+				+0.7
2,581	+				-1.7
2,581	+				-2.3
2,581	+				+0.2
2,581	+				-0.9
2,582	-				-0.5
2,582	-				-0.2
2,582	-				-0.7
2,582	-				+1.0
2,728	+		GFF4646	0.22	-0.7
2,729	-		GFF4646	0.22	-1.4
2,750	+		GFF4646	0.25	-0.5
2,750	+		GFF4646	0.25	-0.6
2,750	+		GFF4646	0.25	-1.7
2,750	+		GFF4646	0.25	+0.8
2,751	-		GFF4646	0.25	-1.5
2,830	+		GFF4646	0.33	+0.6
2,830	+		GFF4646	0.33	-0.7
2,830	+		GFF4646	0.33	+1.5
2,830	+		GFF4646	0.33	+0.6
2,830	+		GFF4646	0.33	+0.5
2,830	+		GFF4646	0.33	+0.4
2,830	+		GFF4646	0.33	-0.6
2,830	+		GFF4646	0.33	-2.7
2,830	+		GFF4646	0.33	-0.3
2,831	-		GFF4646	0.33	+0.1
2,831	-		GFF4646	0.33	-0.1
2,831	-		GFF4646	0.33	-0.2
2,831	-		GFF4646	0.33	-1.0
2,831	-		GFF4646	0.33	+0.5
2,831	-		GFF4646	0.33	-1.8
2,935	+		GFF4646	0.44	-1.7
2,936	-		GFF4646	0.44	-2.6
2,936	-		GFF4646	0.44	-1.9
2,936	-		GFF4646	0.44	-0.3
2,965	+		GFF4646	0.47	-1.0
3,064	+		GFF4646	0.57	-1.2
3,064	+		GFF4646	0.57	-0.5
3,064	+		GFF4646	0.57	-1.4
3,065	-		GFF4646	0.57	-1.8
3,178	+		GFF4646	0.68	-1.6
3,178	+		GFF4646	0.68	-0.4
3,179	-		GFF4646	0.69	+1.7
3,410	-				+2.6
3,449	-				-2.5
3,454	+				+0.7
3,454	+				+0.1
3,454	+				+0.1
3,454	+				-0.5
3,454	+				-2.2
3,454	+				-1.7
3,454	+				-1.8
3,454	+				+0.1
3,454	+				-2.9
3,454	+				-1.7
3,454	+				-1.5
3,454	+				-0.2
3,454	+				+1.4
3,455	-				+4.5
3,455	-				+0.2
3,455	-				-0.7
3,455	-				-2.6
3,455	-				+0.6
3,455	-				-0.1
3,455	-				+0.0
3,455	-				-1.0
3,455	-				-0.8
3,455	-				+0.6
3,458	-				+1.1
3,458	-				-0.8
3,501	-				+0.2
3,514	+				-1.4
3,515	-				-1.7
3,522	+				+1.9
3,523	-				-0.4
3,523	-				+0.8
3,523	-				-2.4
3,526	+				-1.9
3,526	+				-1.0
3,527	-				-0.5
3,532	-				-0.5
3,597	+		GFF4647	0.12	-1.2
3,598	-		GFF4647	0.12	-0.1
3,598	-		GFF4647	0.12	-0.3
4,187	+		GFF4648	0.11	+0.5
4,187	+		GFF4648	0.11	+0.2
4,187	+		GFF4648	0.11	+0.2
4,187	+		GFF4648	0.11	-2.2
4,187	+		GFF4648	0.11	+0.4
4,187	+		GFF4648	0.11	+0.6
4,187	+		GFF4648	0.11	-0.8
4,187	+		GFF4648	0.11	+0.6
4,187	+		GFF4648	0.11	+0.3
4,188	-		GFF4648	0.11	+0.8
4,188	-		GFF4648	0.11	-3.3
4,188	-		GFF4648	0.11	-0.7
4,188	-		GFF4648	0.11	-0.5
4,188	-		GFF4648	0.11	+1.1
4,188	-		GFF4648	0.11	-0.6
4,577	+		GFF4648	0.37	-0.2
4,577	+		GFF4648	0.37	+0.3
4,578	-		GFF4648	0.37	-0.8
4,762	+		GFF4648	0.49	-0.4
4,762	+		GFF4648	0.49	-1.6
4,763	-		GFF4648	0.49	-2.5
4,763	-		GFF4648	0.49	-0.8
4,925	+		GFF4648	0.59	-1.0
4,926	-		GFF4648	0.59	-1.7
4,926	-		GFF4648	0.59	+1.6
4,926	-		GFF4648	0.59	+0.2