Strain Fitness in Variovorax sp. SCN45 around GFF4643

Experiment: Community=Locust bean gum; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4641 and GFF4642 overlap by 4 nucleotidesGFF4642 and GFF4643 are separated by 13 nucleotides GFF4641 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 283,312 to 285,027 GFF4641 GFF4642 - no description, at 285,024 to 285,434 GFF4642 GFF4643 - no description, at 285,448 to 285,663 GFF4643 Position (kb) 285 286Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 284.473 kb on + strand, within GFF4641at 284.473 kb on + strand, within GFF4641at 284.474 kb on - strand, within GFF4641at 284.474 kb on - strand, within GFF4641at 284.474 kb on - strand, within GFF4641at 284.474 kb on - strand, within GFF4641at 284.474 kb on - strand, within GFF4641at 284.603 kb on + strand, within GFF4641at 284.603 kb on + strand, within GFF4641at 284.603 kb on + strand, within GFF4641at 284.603 kb on + strand, within GFF4641at 284.603 kb on + strand, within GFF4641at 284.604 kb on - strand, within GFF4641at 284.604 kb on - strand, within GFF4641at 284.604 kb on - strand, within GFF4641at 284.604 kb on - strand, within GFF4641at 284.633 kb on + strand, within GFF4641at 284.633 kb on + strand, within GFF4641at 284.784 kb on + strand, within GFF4641at 284.784 kb on + strand, within GFF4641at 284.785 kb on - strand, within GFF4641at 284.811 kb on + strand, within GFF4641at 284.811 kb on + strand, within GFF4641at 284.812 kb on - strand, within GFF4641at 284.812 kb on - strand, within GFF4641at 284.812 kb on - strand, within GFF4641at 284.812 kb on - strand, within GFF4641at 284.834 kb on + strand, within GFF4641at 284.834 kb on + strand, within GFF4641at 284.834 kb on + strand, within GFF4641at 284.834 kb on + strand, within GFF4641at 284.834 kb on + strand, within GFF4641at 284.835 kb on - strand, within GFF4641at 284.835 kb on - strand, within GFF4641at 284.835 kb on - strand, within GFF4641at 284.873 kb on + strandat 284.873 kb on + strandat 284.873 kb on + strandat 284.873 kb on + strandat 284.873 kb on + strandat 284.873 kb on + strandat 284.873 kb on + strandat 284.873 kb on + strandat 284.874 kb on - strandat 284.874 kb on - strandat 284.874 kb on - strandat 284.874 kb on - strandat 284.874 kb on - strandat 284.874 kb on - strandat 284.874 kb on - strandat 284.876 kb on + strandat 284.876 kb on + strandat 284.877 kb on - strandat 284.889 kb on + strandat 284.908 kb on + strandat 284.909 kb on - strandat 284.909 kb on - strandat 284.924 kb on + strandat 284.925 kb on - strandat 284.925 kb on - strandat 284.947 kb on + strandat 284.947 kb on + strandat 284.947 kb on + strandat 284.956 kb on + strandat 284.957 kb on - strandat 284.957 kb on - strandat 284.957 kb on - strandat 284.957 kb on - strandat 285.119 kb on - strand, within GFF4642at 285.119 kb on - strand, within GFF4642at 285.119 kb on - strand, within GFF4642at 285.119 kb on - strand, within GFF4642at 285.119 kb on - strand, within GFF4642at 285.131 kb on + strand, within GFF4642at 285.132 kb on - strand, within GFF4642at 285.132 kb on - strand, within GFF4642at 285.202 kb on + strand, within GFF4642at 285.202 kb on + strand, within GFF4642at 285.202 kb on + strand, within GFF4642at 285.203 kb on - strand, within GFF4642at 285.203 kb on - strand, within GFF4642at 285.203 kb on - strand, within GFF4642at 285.271 kb on + strand, within GFF4642at 285.271 kb on + strand, within GFF4642at 285.271 kb on + strand, within GFF4642at 285.271 kb on + strand, within GFF4642at 285.271 kb on + strand, within GFF4642at 285.271 kb on + strand, within GFF4642at 285.271 kb on + strand, within GFF4642at 285.271 kb on + strand, within GFF4642at 285.271 kb on + strand, within GFF4642at 285.271 kb on + strand, within GFF4642at 285.271 kb on + strand, within GFF4642at 285.271 kb on + strand, within GFF4642at 285.271 kb on + strand, within GFF4642at 285.271 kb on + strand, within GFF4642at 285.272 kb on - strand, within GFF4642at 285.272 kb on - strand, within GFF4642at 285.272 kb on - strand, within GFF4642at 285.272 kb on - strand, within GFF4642at 285.272 kb on - strand, within GFF4642at 285.272 kb on - strand, within GFF4642at 285.272 kb on - strand, within GFF4642at 285.272 kb on - strand, within GFF4642at 285.272 kb on - strand, within GFF4642at 285.272 kb on - strand, within GFF4642at 285.272 kb on - strand, within GFF4642at 285.272 kb on - strand, within GFF4642at 285.272 kb on - strand, within GFF4642at 285.272 kb on - strand, within GFF4642at 285.272 kb on - strand, within GFF4642at 285.272 kb on - strand, within GFF4642at 285.272 kb on - strand, within GFF4642at 285.275 kb on + strand, within GFF4642at 285.275 kb on + strand, within GFF4642at 285.275 kb on + strand, within GFF4642at 285.275 kb on + strand, within GFF4642at 285.275 kb on + strand, within GFF4642at 285.275 kb on + strand, within GFF4642at 285.275 kb on + strand, within GFF4642at 285.275 kb on + strand, within GFF4642at 285.275 kb on + strand, within GFF4642at 285.275 kb on + strand, within GFF4642at 285.275 kb on + strand, within GFF4642at 285.276 kb on - strand, within GFF4642at 285.276 kb on - strand, within GFF4642at 285.276 kb on - strand, within GFF4642at 285.276 kb on - strand, within GFF4642at 285.276 kb on - strand, within GFF4642at 285.276 kb on - strand, within GFF4642at 285.334 kb on - strand, within GFF4642at 285.334 kb on - strand, within GFF4642at 285.349 kb on + strand, within GFF4642at 285.350 kb on - strand, within GFF4642at 285.350 kb on - strand, within GFF4642at 285.470 kb on + strand, within GFF4643at 285.470 kb on + strand, within GFF4643at 285.470 kb on + strand, within GFF4643at 285.470 kb on + strand, within GFF4643at 285.470 kb on + strand, within GFF4643at 285.470 kb on + strand, within GFF4643at 285.470 kb on + strand, within GFF4643at 285.470 kb on + strand, within GFF4643at 285.470 kb on + strand, within GFF4643at 285.470 kb on + strand, within GFF4643at 285.470 kb on + strand, within GFF4643at 285.471 kb on - strand, within GFF4643at 285.471 kb on - strand, within GFF4643at 285.512 kb on + strand, within GFF4643at 285.512 kb on + strand, within GFF4643at 285.512 kb on + strand, within GFF4643at 285.512 kb on + strand, within GFF4643at 285.512 kb on + strand, within GFF4643at 285.513 kb on - strand, within GFF4643at 285.513 kb on - strand, within GFF4643at 285.513 kb on - strand, within GFF4643at 285.513 kb on - strand, within GFF4643at 285.513 kb on - strand, within GFF4643at 285.513 kb on - strand, within GFF4643at 285.622 kb on + strand, within GFF4643at 285.622 kb on + strand, within GFF4643at 285.622 kb on + strand, within GFF4643at 285.622 kb on + strand, within GFF4643at 285.622 kb on + strand, within GFF4643at 285.622 kb on + strand, within GFF4643at 285.622 kb on + strand, within GFF4643at 285.622 kb on + strand, within GFF4643at 285.622 kb on + strand, within GFF4643at 285.622 kb on + strand, within GFF4643at 285.622 kb on + strand, within GFF4643at 285.623 kb on - strand, within GFF4643at 285.623 kb on - strand, within GFF4643at 285.623 kb on - strand, within GFF4643at 285.638 kb on + strand, within GFF4643at 285.638 kb on + strand, within GFF4643at 285.638 kb on + strand, within GFF4643at 285.638 kb on + strand, within GFF4643at 285.638 kb on + strand, within GFF4643at 285.638 kb on + strand, within GFF4643at 285.638 kb on + strand, within GFF4643at 285.638 kb on + strand, within GFF4643at 285.639 kb on - strand, within GFF4643at 285.639 kb on - strand, within GFF4643at 285.722 kb on - strandat 285.722 kb on - strandat 285.722 kb on - strandat 285.722 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
remove
284,473 + GFF4641 0.68 -2.4
284,473 + GFF4641 0.68 -2.4
284,474 - GFF4641 0.68 -1.3
284,474 - GFF4641 0.68 -0.5
284,474 - GFF4641 0.68 +2.0
284,474 - GFF4641 0.68 +0.7
284,474 - GFF4641 0.68 +1.0
284,603 + GFF4641 0.75 -1.5
284,603 + GFF4641 0.75 -0.5
284,603 + GFF4641 0.75 +1.2
284,603 + GFF4641 0.75 -2.3
284,603 + GFF4641 0.75 -2.5
284,604 - GFF4641 0.75 +2.2
284,604 - GFF4641 0.75 -0.7
284,604 - GFF4641 0.75 -2.4
284,604 - GFF4641 0.75 +0.2
284,633 + GFF4641 0.77 -0.6
284,633 + GFF4641 0.77 -0.3
284,784 + GFF4641 0.86 -0.2
284,784 + GFF4641 0.86 -2.0
284,785 - GFF4641 0.86 -0.6
284,811 + GFF4641 0.87 -1.7
284,811 + GFF4641 0.87 +2.1
284,812 - GFF4641 0.87 +3.2
284,812 - GFF4641 0.87 -1.8
284,812 - GFF4641 0.87 -1.3
284,812 - GFF4641 0.87 +0.2
284,834 + GFF4641 0.89 +0.7
284,834 + GFF4641 0.89 -1.8
284,834 + GFF4641 0.89 -0.5
284,834 + GFF4641 0.89 -1.8
284,834 + GFF4641 0.89 -1.1
284,835 - GFF4641 0.89 +1.8
284,835 - GFF4641 0.89 -0.6
284,835 - GFF4641 0.89 +1.2
284,873 + -0.4
284,873 + -0.8
284,873 + +0.6
284,873 + +0.4
284,873 + -0.9
284,873 + -1.0
284,873 + -1.8
284,873 + -1.8
284,874 - -2.8
284,874 - -1.9
284,874 - -1.9
284,874 - -0.3
284,874 - +1.1
284,874 - +0.4
284,874 - -0.3
284,876 + +1.0
284,876 + +0.9
284,877 - -3.2
284,889 + +0.0
284,908 + +0.2
284,909 - +1.5
284,909 - +1.5
284,924 + -1.3
284,925 - -0.1
284,925 - +0.6
284,947 + -1.0
284,947 + +0.5
284,947 + -1.3
284,956 + +1.9
284,957 - +1.7
284,957 - +1.3
284,957 - -2.1
284,957 - +1.8
285,119 - GFF4642 0.23 -0.6
285,119 - GFF4642 0.23 +1.1
285,119 - GFF4642 0.23 -0.7
285,119 - GFF4642 0.23 +3.0
285,119 - GFF4642 0.23 -2.2
285,131 + GFF4642 0.26 +0.5
285,132 - GFF4642 0.26 +1.6
285,132 - GFF4642 0.26 -0.2
285,202 + GFF4642 0.43 +1.2
285,202 + GFF4642 0.43 +1.2
285,202 + GFF4642 0.43 +0.9
285,203 - GFF4642 0.44 -1.8
285,203 - GFF4642 0.44 -2.0
285,203 - GFF4642 0.44 -2.5
285,271 + GFF4642 0.60 -0.1
285,271 + GFF4642 0.60 +1.5
285,271 + GFF4642 0.60 -2.4
285,271 + GFF4642 0.60 +0.6
285,271 + GFF4642 0.60 -0.3
285,271 + GFF4642 0.60 -1.2
285,271 + GFF4642 0.60 +0.2
285,271 + GFF4642 0.60 +1.2
285,271 + GFF4642 0.60 -1.0
285,271 + GFF4642 0.60 -0.1
285,271 + GFF4642 0.60 -3.4
285,271 + GFF4642 0.60 +1.7
285,271 + GFF4642 0.60 +2.6
285,271 + GFF4642 0.60 -2.6
285,272 - GFF4642 0.60 -0.8
285,272 - GFF4642 0.60 -1.3
285,272 - GFF4642 0.60 +1.0
285,272 - GFF4642 0.60 -3.2
285,272 - GFF4642 0.60 +0.1
285,272 - GFF4642 0.60 -1.1
285,272 - GFF4642 0.60 +0.1
285,272 - GFF4642 0.60 -2.7
285,272 - GFF4642 0.60 +0.6
285,272 - GFF4642 0.60 -2.5
285,272 - GFF4642 0.60 -2.6
285,272 - GFF4642 0.60 -0.8
285,272 - GFF4642 0.60 -2.6
285,272 - GFF4642 0.60 -1.3
285,272 - GFF4642 0.60 -0.5
285,272 - GFF4642 0.60 -2.6
285,272 - GFF4642 0.60 +1.4
285,275 + GFF4642 0.61 -2.9
285,275 + GFF4642 0.61 -1.6
285,275 + GFF4642 0.61 -1.1
285,275 + GFF4642 0.61 +0.6
285,275 + GFF4642 0.61 +0.4
285,275 + GFF4642 0.61 -2.7
285,275 + GFF4642 0.61 -0.1
285,275 + GFF4642 0.61 -1.2
285,275 + GFF4642 0.61 -0.1
285,275 + GFF4642 0.61 +1.6
285,275 + GFF4642 0.61 +0.4
285,276 - GFF4642 0.61 -1.3
285,276 - GFF4642 0.61 -1.4
285,276 - GFF4642 0.61 -1.1
285,276 - GFF4642 0.61 -1.8
285,276 - GFF4642 0.61 -0.1
285,276 - GFF4642 0.61 -0.1
285,334 - GFF4642 0.75 -1.4
285,334 - GFF4642 0.75 +1.9
285,349 + GFF4642 0.79 -0.9
285,350 - GFF4642 0.79 +1.4
285,350 - GFF4642 0.79 -1.7
285,470 + GFF4643 0.10 -1.1
285,470 + GFF4643 0.10 -0.6
285,470 + GFF4643 0.10 +0.8
285,470 + GFF4643 0.10 -0.1
285,470 + GFF4643 0.10 -0.3
285,470 + GFF4643 0.10 +0.5
285,470 + GFF4643 0.10 +0.4
285,470 + GFF4643 0.10 +1.1
285,470 + GFF4643 0.10 +0.5
285,470 + GFF4643 0.10 +0.2
285,470 + GFF4643 0.10 -1.1
285,471 - GFF4643 0.11 -0.2
285,471 - GFF4643 0.11 +0.1
285,512 + GFF4643 0.30 +0.7
285,512 + GFF4643 0.30 -2.3
285,512 + GFF4643 0.30 -2.4
285,512 + GFF4643 0.30 +0.3
285,512 + GFF4643 0.30 -2.0
285,513 - GFF4643 0.30 +1.7
285,513 - GFF4643 0.30 -2.1
285,513 - GFF4643 0.30 +2.2
285,513 - GFF4643 0.30 +1.0
285,513 - GFF4643 0.30 +1.5
285,513 - GFF4643 0.30 -0.3
285,622 + GFF4643 0.81 -0.6
285,622 + GFF4643 0.81 -1.4
285,622 + GFF4643 0.81 -1.1
285,622 + GFF4643 0.81 +1.2
285,622 + GFF4643 0.81 -3.2
285,622 + GFF4643 0.81 -1.0
285,622 + GFF4643 0.81 -0.4
285,622 + GFF4643 0.81 -0.0
285,622 + GFF4643 0.81 -1.8
285,622 + GFF4643 0.81 -0.6
285,622 + GFF4643 0.81 -1.4
285,623 - GFF4643 0.81 -2.8
285,623 - GFF4643 0.81 +0.2
285,623 - GFF4643 0.81 +1.3
285,638 + GFF4643 0.88 -2.3
285,638 + GFF4643 0.88 -0.2
285,638 + GFF4643 0.88 -0.6
285,638 + GFF4643 0.88 -0.5
285,638 + GFF4643 0.88 +0.1
285,638 + GFF4643 0.88 -2.9
285,638 + GFF4643 0.88 +1.9
285,638 + GFF4643 0.88 +0.8
285,639 - GFF4643 0.88 -0.2
285,639 - GFF4643 0.88 +1.8
285,722 - +1.1
285,722 - -0.6
285,722 - +0.0
285,722 - -1.1

Or see this region's nucleotide sequence